Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Reverse (-)

11254602 .. 11255351

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGATAACTTGAATGTTTTCGCAAATGAAGACAATCAAGTGAATGATGTGAAGCCCCCACCACCACCACCTCGAGTGTGTGCAAGGTGTGATTCTGATAATACTAAATTTTGTTATTACAACAACTACTGTGAGTTTCAGCCACGATACTTCTGCAAGAACTGTCGTAGATACTGGACTCATGGTGGGGCTTTAAGAAACATACCAATTGGTGGAAGTAGTCGTGCCAAACGGGCAAGGGTAAATCAACCTTCGGTTGCTCGGATGGTTTCTGTTGAGACCCAACGAGGTAACAATCAACCTTTCTCTAATGTTCAAGAAAACGTTCATCTTGTTGGATCTTTTGGTGCTTCATCTTCATCTTCTGTTGGTGCTGTTGGGAACCTTTTTGGTTCTTTGTATGATATTCATGGTGGTATGGTAACAAATTTGCATCCAACTCGAACTGTTCGACCAAATCATCGCTTAGCTTTCCATGATGGATCATTTGAGCAAGACTATTACGATGTTGGGTCCGATAATCTTTTGGTCAACCAACAAGTTGGTGGCTACGGTTATCACATGAATCCAGTGGATCAATTCAAGTGGAACCAGAGCTTCAACAACACTATGAACATGAATTATAATAACGATAGCACTAGTGGAAGTAGCAGAGGATCTGACATGAATGTGAACCATGATAACAAGAAGATCAGATACCGCAACTCTGTGATTATGCATCCTTGTCATCTGGAGAAGGATGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

249

Amino Acids

28.09

Weight (kDa)

8.65

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	25 - 78	4.2e-29	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	1 cut(s)	700
AclI	AACGTT	1 cut(s)	324
AclWI	GGATC	4 cut(s)	346, 490, 582, 664
AcsI	RAATTY	2 cut(s)	107, 427
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	13, 317, 583, 601
AhlI	ACTAGT	1 cut(s)	638
AluBI	AGCT	2 cut(s)	470, 597
AluI	AGCT	2 cut(s)	470, 597
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	346, 490, 582, 664
Ama87I	CYCGRG	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	107, 427
Asp700I	GAANNNNTTC	2 cut(s)	17, 324
AspS9I	GGNCC	2 cut(s)	513, 743
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	2 cut(s)	513, 743
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	3 cut(s)	259, 473, 734
BcgI	CGANNNNNNTGC	4 cut(s)	135, 169, 422, 456
BcoDI	GTCTC	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	1 cut(s)	639
BglI	GCCNNNNNGGC	1 cut(s)	233
BlpI	GCTNAGC	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	513, 743
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	513, 743
BmiI	GGNNCC	3 cut(s)	383, 514, 590
BmsI	GCATC	2 cut(s)	442, 727
BpiI	GAAGAC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	466
BsaI	GGTCTC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	179, 569
BseGI	GGATG	4 cut(s)	270, 433, 718, 745
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	179, 569
BsiHKCI	CYCGRG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	338, 482, 574, 656, 690
Bsp1720I	GCTNAGC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	383, 514, 590
BspPI	GGATC	4 cut(s)	346, 490, 582, 664
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	179, 569
BssMI	GATC	5 cut(s)	338, 482, 574, 656, 690
Bst4CI	ACNGT	4 cut(s)	131, 164, 448, 554
BstDEI	CTNAG	1 cut(s)	466
BstF5I	GGATG	4 cut(s)	270, 433, 718, 745
BstKTI	GATC	5 cut(s)	341, 485, 577, 659, 693
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	338, 482, 574, 656, 690
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	338, 656
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	2 cut(s)	338, 656
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	4 cut(s)	270, 433, 718, 745
BtsIMutI	CAGTG	1 cut(s)	576
Cfr13I	GGNCC	2 cut(s)	513, 743
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
CviAII	CATG	7 cut(s)	182, 410, 476, 562, 616, 664, 677
CviJI	RGCY	6 cut(s)	55, 142, 191, 470, 549, 597
CviKI_1	RGCY	6 cut(s)	55, 142, 191, 470, 549, 597
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	5 cut(s)	340, 484, 576, 658, 692
DpnII	GATC	5 cut(s)	338, 482, 574, 656, 690
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	513, 743
Eco88I	CYCGRG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	720
FaeI	CATG	7 cut(s)	185, 413, 479, 565, 619, 667, 680
FatI	CATG	7 cut(s)	181, 409, 475, 561, 615, 663, 676
FokI	GGATG	3 cut(s)	277, 420, 705
FspBI	CTAG	1 cut(s)	639
Hin1II	CATG	7 cut(s)	185, 413, 479, 565, 619, 667, 680
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	3 cut(s)	92, 178, 565
Hpy166II	GTNNAC	2 cut(s)	532, 673
Hpy188I	TCNGA	5 cut(s)	97, 264, 517, 661, 695
Hpy188III	TCNNGA	2 cut(s)	317, 731
Hpy8I	GTNNAC	2 cut(s)	532, 673
HpyAV	CCTTC	2 cut(s)	261, 730
HpyCH4III	ACNGT	4 cut(s)	131, 164, 448, 554
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	83, 156, 433, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	466
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	7 cut(s)	185, 413, 479, 565, 619, 667, 680
Kzo9I	GATC	5 cut(s)	338, 482, 574, 656, 690
LpnPI	CCDG	4 cut(s)	160, 582, 605, 716
LweI	GCATC	2 cut(s)	442, 727
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	290, 421
MalI	GATC	5 cut(s)	340, 484, 576, 658, 692
MboI	GATC	5 cut(s)	338, 482, 574, 656, 690
MboII	GAAGA	4 cut(s)	41, 348, 354, 700
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	338, 656
MluCI	AATT	5 cut(s)	107, 207, 427, 578, 619
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	316, 461
MnlI	CCTC	3 cut(s)	81, 281, 647
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	2 cut(s)	17, 324
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	5 cut(s)	338, 482, 574, 656, 690
NlaIII	CATG	7 cut(s)	185, 413, 479, 565, 619, 667, 680
NlaIV	GGNNCC	3 cut(s)	383, 514, 590
NsiI	ATGCAT	1 cut(s)	720
PaeR7I	CTCGAG	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	448
PdmI	GAANNNNTTC	2 cut(s)	17, 324
PfeI	GAWTC	2 cut(s)	92, 565
PflMI	CCANNNNNTGG	1 cut(s)	212
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	624
Psp1406I	AACGTT	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	383, 514, 590
PspPI	GGNCC	2 cut(s)	513, 743
PspXI	VCTCGAGB	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	338, 656
RseI	CAYNNNNRTG	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	5 cut(s)	338, 482, 574, 656, 690
Sau96I	GGNCC	2 cut(s)	513, 743
SchI	GAGTC	1 cut(s)	172
SetI	ASST	9 cut(s)	73, 89, 253, 292, 304, 327, 387, 472, 599
SfaNI	GCATC	2 cut(s)	442, 727
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	513, 743
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	5 cut(s)	107, 207, 427, 578, 619
SsiI	CCGC	1 cut(s)	700
SspMI	CTAG	1 cut(s)	639
TaaI	ACNGT	4 cut(s)	131, 164, 448, 554
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	73, 442, 451
TasI	AATT	5 cut(s)	107, 207, 427, 578, 619
TfiI	GAWTC	2 cut(s)	92, 565
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	576
TspDTI	ATGAA	9 cut(s)	42, 317, 342, 348, 398, 578, 626, 632, 680
TspRI	CASTG	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	513, 743
XapI	RAATTY	2 cut(s)	107, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	2 cut(s)	17, 324
XspI	CTAG	1 cut(s)	639
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.