Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

37109629 .. 37110120

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1280000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTCAGGTCCAAACCGGCCAAGATGTTCATGGAATTAAGCTTTTCGGGAAAACGATTACACTGCAGAACAGATCATCACAAGTAAAAGAAGAACCCAAAAAGGATGATCAAACGGTGGAGAAGCGGCCTGATAGGATCATACCATGCCCAAGATGCAAAAGCATGGAGACAAAATTTTGTTACTTTAATAACTACAATGTTAACCAGCCTAGGCACTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTACGGAACGTCCCCGTGGGGGCTGGTCGACGAAAAACCAAGCCGCCTTGTCGGGGGCTGGCCGGGTTACCGGAGGGTTGTATATATGAGGGTTCAGATGTGGTGCACCAGTTTGAGTTAGATGGGGTGGTGGAAGAGTGGCAAGTGGCGGCGGCACAAGGCAGTTTTCACCAAGTTTTCCCGGTGGCGAAGAGGCGGAGGACCGGCTCAGGTGGCCAACCATGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

9.4

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	46 - 101	2.2e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	6 cut(s)	127, 255, 305, 410, 413, 457
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	4 cut(s)	19, 249, 321, 475
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	280, 314
AluBI	AGCT	2 cut(s)	43, 489
AluI	AGCT	2 cut(s)	43, 489
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	6 cut(s)	19, 128, 249, 258, 321, 475
ApaI	GGGCCC	1 cut(s)	262
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	231, 486
ApoI	RAATTY	1 cut(s)	176
AspA2I	CCTAGG	1 cut(s)	212
AspS9I	GGNCC	4 cut(s)	10, 258, 259, 462
AsuC2I	CCSGG	2 cut(s)	325, 443
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	10, 462
AvrII	CCTAGG	1 cut(s)	212
BaeGI	GKGCMC	2 cut(s)	262, 369
BalI	TGGCCA	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	325, 443
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	6 cut(s)	128, 232, 305, 411, 414, 487
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	6 cut(s)	129, 233, 306, 412, 415, 488
Bme1390I	CCNGG	2 cut(s)	325, 443
Bme18I	GGWCC	2 cut(s)	10, 462
BmgT120I	GGNCC	4 cut(s)	10, 258, 259, 462
BmiI	GGNNCC	2 cut(s)	259, 260
BmrFI	CCNGG	2 cut(s)	325, 443
BmsI	GCATC	1 cut(s)	146
Bpu10I	CCTNAGC	2 cut(s)	6, 469
BpuMI	CCSGG	2 cut(s)	325, 443
BsaJI	CCNNGG	2 cut(s)	212, 276
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 314
Bse118I	RCCGGY	3 cut(s)	17, 251, 464
Bse1I	ACTGG	2 cut(s)	248, 370
BseDI	CCNNGG	2 cut(s)	212, 276
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	280, 314
BseMII	CTCAG	2 cut(s)	20, 483
BseNI	ACTGG	2 cut(s)	248, 370
BseSI	GKGCMC	2 cut(s)	262, 369
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	6 cut(s)	21, 130, 251, 260, 323, 477
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	6 cut(s)	18, 252, 324, 332, 443, 465
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	280, 314
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	6 cut(s)	21, 130, 251, 260, 323, 477
Bsp120I	GGGCCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	262, 369
Bsp143I	GATC	3 cut(s)	74, 109, 138
BspACI	CCGC	6 cut(s)	127, 255, 305, 410, 413, 457
BspANI	GGCC	6 cut(s)	21, 130, 251, 260, 323, 477
BspCNI	CTCAG	2 cut(s)	19, 482
BspLI	GGNNCC	2 cut(s)	259, 260
BspMAI	CTGCAG	1 cut(s)	69
BspPI	GGATC	1 cut(s)	146
BsrFI	RCCGGY	3 cut(s)	17, 251, 464
BsrI	ACTGG	2 cut(s)	248, 370
BssAI	RCCGGY	3 cut(s)	17, 251, 464
BssECI	CCNNGG	2 cut(s)	212, 276
BssMI	GATC	3 cut(s)	74, 109, 138
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	390, 446
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	253, 321
BstDEI	CTNAG	2 cut(s)	6, 469
BstDSI	CCRYGG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	77, 112, 141
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	74, 109, 138
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 231, 257, 474, 483
BstPI	GGTNACC	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	323, 441
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	2 cut(s)	262, 369
BstV1I	GCAGC	1 cut(s)	218
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	6 cut(s)	21, 130, 251, 260, 323, 477
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	253, 321
Cfr10I	RCCGGY	3 cut(s)	17, 251, 464
Cfr13I	GGNCC	4 cut(s)	10, 258, 259, 462
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	4 cut(s)	32, 147, 166, 483
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	6, 469
DpnI	GATC	3 cut(s)	76, 111, 140
DpnII	GATC	3 cut(s)	74, 109, 138
EaeI	YGGCCR	4 cut(s)	19, 249, 321, 475
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	390, 446
EarI	CTCTTC	2 cut(s)	390, 446
EciI	GGCGGA	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	10, 462
Eco52I	CGGCCG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	258, 259
EcoO65I	GGTNACC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	4 cut(s)	35, 150, 169, 486
FaiI	YATR	8 cut(s)	33, 143, 148, 167, 344, 346, 348, 484
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	31, 146, 165, 482
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	6 cut(s)	128, 232, 305, 411, 414, 487
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	6 cut(s)	128, 232, 305, 411, 414, 487
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	6 cut(s)	128, 232, 305, 411, 414, 487
HaeIII	GGCC	6 cut(s)	21, 130, 251, 260, 323, 477
HapII	CCGG	6 cut(s)	18, 252, 324, 332, 443, 465
Hin1II	CATG	4 cut(s)	35, 150, 169, 486
HincII	GTYRAC	2 cut(s)	205, 290
HindII	GTYRAC	2 cut(s)	205, 290
HindIII	AAGCTT	1 cut(s)	41
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	6 cut(s)	18, 252, 324, 332, 443, 465
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	205, 290, 367
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	3 cut(s)	205, 290, 367
Hpy99I	CGWCG	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	67, 159, 225, 367, 486
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 231, 257, 474, 483
HpyF3I	CTNAG	2 cut(s)	6, 469
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	35, 150, 169, 486
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	109
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	74, 109, 138
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	182, 327
MalI	GATC	3 cut(s)	76, 111, 140
MboI	GATC	3 cut(s)	74, 109, 138
MboII	GAAGA	3 cut(s)	104, 407, 463
MhlI	GDGCHC	2 cut(s)	262, 369
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	2 cut(s)	36, 176
MluNI	TGGCCA	1 cut(s)	477
MnlI	CCTC	5 cut(s)	231, 328, 343, 447, 453
Mox20I	TGGCCA	1 cut(s)	477
MroNI	GCCGGC	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	39, 189, 204
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	6 cut(s)	18, 252, 324, 332, 443, 465
MspR9I	CCNGG	2 cut(s)	325, 443
MwoI	GCNNNNNNNGC	5 cut(s)	156, 231, 257, 474, 483
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	2 cut(s)	325, 443
NdeII	GATC	3 cut(s)	74, 109, 138
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	35, 150, 169, 486
NlaIV	GGNNCC	2 cut(s)	259, 260
PdiI	GCCGGC	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	129, 233, 306, 412, 415, 488
PspEI	GGTNACC	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	259, 260
PspOMI	GGGCCC	1 cut(s)	258
PspPI	GGNCC	4 cut(s)	10, 258, 259, 462
PstI	CTGCAG	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	489
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	39, 189, 204
SatI	GCNGC	6 cut(s)	128, 232, 305, 411, 414, 487
Sau3AI	GATC	3 cut(s)	74, 109, 138
Sau96I	GGNCC	4 cut(s)	10, 258, 259, 462
ScrFI	CCNGG	2 cut(s)	325, 443
SduI	GDGCHC	2 cut(s)	262, 369
SetI	ASST	6 cut(s)	12, 45, 242, 273, 475, 491
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	65
SfiI	GGCCNNNNNGGCC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	10, 462
Sse9I	AATT	2 cut(s)	36, 176
SsiI	CCGC	6 cut(s)	127, 255, 305, 410, 413, 457
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	323, 441
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	289
TasI	AATT	2 cut(s)	36, 176
TauI	GCSGC	4 cut(s)	130, 307, 413, 416
Tru1I	TTAA	3 cut(s)	39, 189, 204
Tru9I	TTAA	3 cut(s)	39, 189, 204
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	2 cut(s)	231, 486
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	10, 462
XapI	RAATTY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmaJI	CCTAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.