Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Reverse (-)

14413694 .. 14414788

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACTATTGCATTTAACACTCGAACAATAAAAAATGAAGAAGAGACACACCCGCCGGAGCAAGAAGCCACAATAGCCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCGGATAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAACAACTACAACGTTAATCAGCCTCGACACTTTTGTAAAGGCTGCCACCGTTACTGGACCGCCGGTGGTGCACTCCGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCTGGTCGTGTCGTGGTTGGTATGCTTGGAGATGGAAATGGTGTTCGCCAAGTCGAGCTTATAAATGGCTTGCTCGTTGAGGAGTGGCAGCATGCCGCAGCCGCAGCTCACGGTAGTTTCCGGCATGATTTTCCCATGAAGCGGCTCCGGTGTTACTCCGACGGTCAATCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902455 GO:1902679 GO:1903506 GO:1903507 GO:2000036 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

170

Amino Acids

18.93

Weight (kDa)

9.39

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	56 - 111	1.4e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	311
AccIII	TCCGGA	2 cut(s)	160, 294
AciI	CCGC	5 cut(s)	92, 279, 432, 438, 478
AclI	AACGTT	2 cut(s)	231, 300
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	321, 477
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	4 cut(s)	191, 223, 363, 395
AluBI	AGCT	2 cut(s)	394, 443
AluI	AGCT	2 cut(s)	394, 443
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	77, 194
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	147
Aor13HI	TCCGGA	2 cut(s)	160, 294
AoxI	GGCC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	261, 424, 434, 440
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	4 cut(s)	248, 436, 446, 452
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	101, 162
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	77, 194
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	7 cut(s)	262, 425, 432, 435, 438, 441, 479
BlsI	GCNGC	7 cut(s)	263, 426, 433, 436, 439, 442, 480
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	313, 482
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	312
BsaWI	WCCGGW	3 cut(s)	160, 294, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 477
Bse118I	RCCGGY	2 cut(s)	281, 314
Bse1I	ACTGG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	127
BseAI	TCCGGA	2 cut(s)	160, 294
BseBI	CCWGG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	321, 477
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	248, 436, 446, 452
Bsh1285I	CGRYCG	2 cut(s)	150, 319
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	2 cut(s)	150, 319
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	7 cut(s)	95, 161, 282, 295, 315, 457, 484
BslI	CCNNNNNNNGG	2 cut(s)	321, 477
BsmAI	GTCTC	2 cut(s)	77, 194
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp13I	TCCGGA	2 cut(s)	160, 294
Bsp143I	GATC	3 cut(s)	122, 139, 168
BspACI	CCGC	5 cut(s)	92, 279, 432, 438, 478
BspANI	GGCC	1 cut(s)	149
BspEI	TCCGGA	2 cut(s)	160, 294
BspLI	GGNNCC	2 cut(s)	313, 482
BspPI	GGATC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	281, 314
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	2 cut(s)	281, 314
BssMI	GATC	3 cut(s)	122, 139, 168
BssNI	GRCGYC	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	269, 449, 500
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	407, 429
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	3 cut(s)	125, 142, 171
BstMAI	GTCTC	2 cut(s)	77, 194
BstMBI	GATC	3 cut(s)	122, 139, 168
BstMCI	CGRYCG	2 cut(s)	150, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 287, 437, 440
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	180, 431
BstSCI	CCNGG	1 cut(s)	337
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	4 cut(s)	248, 436, 446, 452
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BstZI	CGGCCG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	407, 429
CfoI	GCGC	1 cut(s)	314
Cfr10I	RCCGGY	2 cut(s)	281, 314
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	337
CviAII	CATG	5 cut(s)	177, 196, 428, 461, 472
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	3 cut(s)	124, 141, 170
DpnII	GATC	3 cut(s)	122, 139, 168
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	276
Eco52I	CGGCCG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
FaeI	CATG	5 cut(s)	180, 199, 431, 464, 475
FaiI	YATR	8 cut(s)	173, 178, 197, 359, 398, 429, 462, 473
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	5 cut(s)	176, 195, 427, 460, 471
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	262, 425, 432, 435, 438, 441, 479
Fsp4HI	GCNGC	7 cut(s)	262, 425, 432, 435, 438, 441, 479
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	7 cut(s)	262, 425, 432, 435, 438, 441, 479
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	7 cut(s)	95, 161, 282, 295, 315, 457, 484
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	180, 199, 431, 464, 475
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	7, 14
HpaII	CCGG	7 cut(s)	95, 161, 282, 295, 315, 457, 484
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	4 cut(s)	139, 144, 324, 496
Hpy188III	TCNNGA	3 cut(s)	11, 161, 295
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	3 cut(s)	311, 324, 500
HpyCH4III	ACNGT	3 cut(s)	269, 449, 500
HpyCH4IV	ACGT	2 cut(s)	231, 300
HpyCH4V	TGCA	3 cut(s)	50, 189, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 287, 437, 440
HpySE526I	ACGT	2 cut(s)	231, 300
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	180, 199, 431, 464, 475
HspAI	GCGC	1 cut(s)	312
KasI	GGCGCC	1 cut(s)	311
Kpn2I	TCCGGA	2 cut(s)	160, 294
Kzo9I	GATC	3 cut(s)	122, 139, 168
LmnI	GCTCC	2 cut(s)	97, 486
Lsp1109I	GCAGC	4 cut(s)	248, 436, 446, 452
LweI	GCATC	1 cut(s)	176
MabI	ACCWGGT	1 cut(s)	337
MaeII	ACGT	2 cut(s)	231, 300
MaeIII	GTNAC	3 cut(s)	212, 269, 488
MalI	GATC	3 cut(s)	124, 141, 170
MboI	GATC	3 cut(s)	122, 139, 168
MboII	GAAGA	2 cut(s)	89, 92
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	292
Mly113I	GGCGCC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	2 cut(s)	252, 409
MroI	TCCGGA	2 cut(s)	160, 294
MseI	TTAA	3 cut(s)	27, 54, 234
MspI	CCGG	7 cut(s)	95, 161, 282, 295, 315, 457, 484
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	113, 287, 437, 440
NarI	GGCGCC	1 cut(s)	312
NdeII	GATC	3 cut(s)	122, 139, 168
NlaIII	CATG	5 cut(s)	180, 199, 431, 464, 475
NlaIV	GGNNCC	2 cut(s)	313, 482
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	2 cut(s)	180, 431
PaeI	GCATGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	7 cut(s)	263, 426, 433, 436, 439, 442, 480
PluTI	GGCGCC	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	398
Psp1406I	AACGTT	2 cut(s)	231, 300
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	313, 482
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	27, 54, 234
SatI	GCNGC	7 cut(s)	262, 425, 432, 435, 438, 441, 479
Sau3AI	GATC	3 cut(s)	122, 139, 168
Sau96I	GGNCC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	5 cut(s)	234, 303, 340, 396, 445
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	1 cut(s)	176
SfoI	GGCGCC	1 cut(s)	313
SgrAI	CRCCGGYG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	9, 18
SmoI	CTYRAG	2 cut(s)	9, 18
SphI	GCATGC	1 cut(s)	431
SsiI	CCGC	5 cut(s)	92, 279, 432, 438, 478
SspDI	GGCGCC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	3 cut(s)	269, 449, 500
TaiI	ACGT	2 cut(s)	234, 303
TaqI	TCGA	3 cut(s)	61, 244, 390
TauI	GCSGC	3 cut(s)	434, 440, 481
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	27, 54, 234
Tru9I	TTAA	3 cut(s)	27, 54, 234
TseI	GCWGC	4 cut(s)	261, 424, 434, 440
TspDTI	ATGAA	2 cut(s)	90, 488
VneI	GTGCAC	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	276
XceI	RCATGY	2 cut(s)	180, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.