Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

11238441 .. 11239073

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATAACTTGAATGTTTTCGCTAATGAAGACAATCAAGTGAATGGTTTGAAGCGTCCACCCCCGTCACGAGTGTGTCCAAGGTGTGATTCTGATAACACTAAGTTTTGCTTTTACAACAACTACAGTGAATCTCAACCGCGCTACTTTTGCAAAAACTGTCGTAGATATTGGACTCATGGTGGAGCTTTAAGAAACATACCAGTTGGTGGAAGTTGTCGTAAACCAAAGCGTCTGAAGGTAGATCAATCTTCGATTTCTGAGATGGTTTCTGTTGAGAACCAACCAATTAATCATCAATCTTTCAGACAAACTCAAGAAAACAATGAGTTTGTTCGATCTTTTGACGCTTCTTCTTCTGCTACTGTTACTGCCGTTCCGAACCATTTTGGTTATCTAAGTGAACTTCATGGTGTAACAAATTTGCTTCCAATTCAAAGTTTTCGAACAATGGACTGCTTAGATTTCGGTGATGAATCTTTTCAACAAGGTTATTACGATGTTGGATCCAATGATTTGATTGATAACCCTTTGATAAACCAATCCATCGGTGGGTATGTTGATAATCTTACAAGTTATTGCATAAATCAAGTGGAACCAAAGCTTCAACCACGCTATGAACATGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0060688 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1900618 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

210

Amino Acids

23.97

Weight (kDa)

5.72

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	24 - 78	1.9e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	501, 514
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	209, 552
AgsI	TTSAA	5 cut(s)	13, 52, 437, 485, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AleI	CACNNNNGTG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	188, 604
AluI	AGCT	2 cut(s)	188, 604
AlwI	GGATC	2 cut(s)	501, 514
ApoI	RAATTY	1 cut(s)	421
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	2 cut(s)	17, 480
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	506
BauI	CACGAG	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	2 cut(s)	259, 554
BceAI	ACGGC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	508, 597
BpiI	GAAGAC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 552
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	209, 552
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	209, 552
Bsp119I	TTCGAA	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	244, 338, 506
BspACI	CCGC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	508, 597
BspPI	GGATC	2 cut(s)	501, 514
BspT104I	TTCGAA	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	3 cut(s)	244, 338, 506
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	69
Bst4CI	ACNGT	3 cut(s)	128, 161, 367
BstBI	TTCGAA	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	102, 261, 398, 460
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	247, 341, 509
BstMBI	GATC	3 cut(s)	244, 338, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	144
CseI	GACGC	3 cut(s)	44, 221, 356
CviAII	CATG	3 cut(s)	179, 410, 623
CviJI	RGCY	2 cut(s)	188, 604
CviKI_1	RGCY	2 cut(s)	188, 604
DdeI	CTNAG	4 cut(s)	102, 261, 398, 460
DpnI	GATC	3 cut(s)	246, 340, 508
DpnII	GATC	3 cut(s)	244, 338, 506
Eco130I	CCWWGG	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	3 cut(s)	182, 413, 626
FaiI	YATR	8 cut(s)	180, 200, 411, 558, 584, 618, 624, 631
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	3 cut(s)	178, 409, 622
GlaI	GCGC	1 cut(s)	143
HgaI	GACGC	3 cut(s)	44, 221, 356
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	182, 413, 626
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	5 cut(s)	89, 131, 175, 476, 626
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	3 cut(s)	59, 224, 404
Hpy188I	TCNGA	5 cut(s)	94, 237, 262, 308, 381
Hpy188III	TCNNGA	2 cut(s)	69, 317
Hpy8I	GTNNAC	3 cut(s)	59, 224, 404
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	128, 161, 367
HpyCH4V	TGCA	2 cut(s)	153, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	4 cut(s)	102, 261, 398, 460
Hsp92II	CATG	3 cut(s)	182, 413, 626
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	244, 338, 506
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	66, 367, 415
MalI	GATC	3 cut(s)	246, 340, 508
MboI	GATC	3 cut(s)	244, 338, 506
MboII	GAAGA	4 cut(s)	41, 243, 345, 348
MflI	RGATCY	1 cut(s)	506
MluCI	AATT	3 cut(s)	288, 421, 432
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	484
MroXI	GAANNNNTTC	2 cut(s)	17, 480
MseI	TTAA	2 cut(s)	191, 291
MslI	CAYNNNNRTG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	3 cut(s)	244, 338, 506
NlaIII	CATG	3 cut(s)	182, 413, 626
NlaIV	GGNNCC	2 cut(s)	508, 597
NmuCI	GTSAC	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	73
PdmI	GAANNNNTTC	2 cut(s)	17, 480
PfeI	GAWTC	4 cut(s)	89, 131, 476, 626
PflMI	CCANNNNNTGG	1 cut(s)	209
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	508, 597
PsuI	RGATCY	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	191, 291
Sau3AI	GATC	3 cut(s)	244, 338, 506
SchI	GAGTC	1 cut(s)	169
SetI	ASST	5 cut(s)	86, 190, 243, 493, 606
SfcI	CTRYAG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	288, 421, 432
SsiI	CCGC	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	128, 161, 367
TaqI	TCGA	3 cut(s)	254, 337, 445
TasI	AATT	3 cut(s)	288, 421, 432
TfiI	GAWTC	4 cut(s)	89, 131, 476, 626
Tru1I	TTAA	2 cut(s)	191, 291
Tru9I	TTAA	2 cut(s)	191, 291
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	4 cut(s)	42, 398, 489, 633
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	209
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmnI	GAANNNNTTC	2 cut(s)	17, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.