Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

4589101 .. 4589613

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTGAAGTTAGCAGCGGCCAAGGTGCGCCTGGGATTAAGCTGTTTGGGACAACCATTACATTACAGCAAGTAGTAGTGAAAGATGATCATCATCGTGAGCAAAAGAAAGCAGACGACGTTCATGACCAAACGGTGGAGATGAAAAGGCCGGAGAAGATCATACCATGCCCAAGGTGCAAGAGCATGGAGACCAAGTTTTGTTACTTCAATAACTACAATGTAAACCAGCCTCGACACTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTACGTAACGTGCCGGTGGGAGCCGGCCGTCGGAAAAGCAAGCCTCCGTGCCGGGAGTTGGTCGGTTTTCCGGAGCCTTGTATGTATGAGGCTTCAGAGGTGGTGCACCAGTTTGAGCTGGAAGGGGTTGTGGAAAAGTGGCACGTGGCTGCGGTACAGGGCGATTTCCGACATGTTTTCCCGGTGGTGAAGCGGCGGAGGAGTGGCTCAGGTGGTCAAACGTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

171

Amino Acids

19.19

Weight (kDa)

9.17

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	53 - 108	1.2e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	5 cut(s)	18, 276, 434, 475, 478
AcoI	YGGCCR	3 cut(s)	19, 270, 307
AcuI	CTGAAG	2 cut(s)	27, 360
AcvI	CACGTG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	263, 438
AfiI	CCNNNNNNNGG	3 cut(s)	136, 312, 340
AflIII	ACRYGT	2 cut(s)	454, 503
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	43, 400, 510
AluI	AGCT	3 cut(s)	43, 400, 510
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	185
Alw44I	GTGCAC	1 cut(s)	386
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	5 cut(s)	19, 149, 270, 279, 307
ApaI	GGGCCC	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	15, 252, 431
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	279, 280
AsuC2I	CCSGG	2 cut(s)	335, 464
AsuHPI	GGTGA	1 cut(s)	481
BaeGI	GKGCMC	2 cut(s)	283, 390
BanII	GRGCYC	1 cut(s)	283
BbrPI	CACGTG	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	27, 239, 418
BceAI	ACGGC	2 cut(s)	285, 294
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	335, 464
BcoDI	GTCTC	1 cut(s)	185
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	5 cut(s)	16, 19, 253, 432, 476
BlsI	GCNGC	5 cut(s)	17, 20, 254, 433, 477
Bme1390I	CCNGG	3 cut(s)	33, 335, 464
BmgT120I	GGNCC	2 cut(s)	279, 280
BmiI	GGNNCC	4 cut(s)	280, 281, 304, 357
BmrFI	CCNGG	3 cut(s)	33, 335, 464
Bpu10I	CCTNAGC	1 cut(s)	490
BpuMI	CCSGG	2 cut(s)	335, 464
BsaAI	YACGTR	2 cut(s)	287, 427
BsaBI	GATNNNNATC	2 cut(s)	90, 93
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	22, 32, 173
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 312, 340
Bse118I	RCCGGY	3 cut(s)	272, 295, 305
Bse1I	ACTGG	2 cut(s)	269, 391
Bse8I	GATNNNNATC	2 cut(s)	90, 93
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	22, 32, 173
BseJI	GATNNNNATC	2 cut(s)	90, 93
BseLI	CCNNNNNNNGG	3 cut(s)	136, 312, 340
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	269, 391
BseRI	GAGGAG	1 cut(s)	496
BseSI	GKGCMC	2 cut(s)	283, 390
BseX3I	CGGCCG	2 cut(s)	270, 307
BseXI	GCAGC	3 cut(s)	27, 239, 418
Bsh1285I	CGRYCG	2 cut(s)	273, 310
BshFI	GGCC	5 cut(s)	21, 151, 272, 281, 309
BsiEI	CGRYCG	2 cut(s)	273, 310
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	7 cut(s)	152, 273, 296, 306, 334, 353, 464
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	136, 312, 340
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	21, 151, 272, 281, 309
Bso31I	GGTCTC	1 cut(s)	185
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	283, 390
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	88, 159
BspACI	CCGC	5 cut(s)	18, 276, 434, 475, 478
BspANI	GGCC	5 cut(s)	21, 151, 272, 281, 309
BspCNI	CTCAG	1 cut(s)	503
BspEI	TCCGGA	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	280, 281, 304, 357
BspTNI	GGTCTC	1 cut(s)	185
BsrFI	RCCGGY	3 cut(s)	272, 295, 305
BsrI	ACTGG	2 cut(s)	269, 391
BssAI	RCCGGY	3 cut(s)	272, 295, 305
BssECI	CCNNGG	3 cut(s)	22, 32, 173
BssMI	GATC	2 cut(s)	88, 159
BssT1I	CCWWGG	2 cut(s)	22, 173
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstBAI	YACGTR	2 cut(s)	287, 427
BstC8I	GCNNGC	3 cut(s)	274, 307, 323
BstDEI	CTNAG	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	91, 162
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	88, 159
BstMCI	CGRYCG	2 cut(s)	273, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 252, 278
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	31, 333, 462
BstSLI	GKGCMC	2 cut(s)	283, 390
BstSNI	TACGTA	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	27, 239, 418
BstZI	CGGCCG	2 cut(s)	270, 307
BsuRI	GGCC	5 cut(s)	21, 151, 272, 281, 309
Cac8I	GCNNGC	3 cut(s)	274, 307, 323
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	3 cut(s)	272, 295, 305
Cfr13I	GGNCC	2 cut(s)	279, 280
Csp6I	GTAC	2 cut(s)	262, 437
CviAII	CATG	4 cut(s)	125, 168, 187, 455
CviQI	GTAC	2 cut(s)	262, 437
DdeI	CTNAG	1 cut(s)	490
DpnI	GATC	2 cut(s)	90, 161
DpnII	GATC	2 cut(s)	88, 159
EaeI	YGGCCR	3 cut(s)	19, 270, 307
EagI	CGGCCG	2 cut(s)	270, 307
EciI	GGCGGA	1 cut(s)	493
EclXI	CGGCCG	2 cut(s)	270, 307
Eco105I	TACGTA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	22, 173
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	185
Eco52I	CGGCCG	2 cut(s)	270, 307
Eco57I	CTGAAG	2 cut(s)	27, 360
Eco72I	CACGTG	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	279, 280
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	22, 173
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	22, 173
FaeI	CATG	4 cut(s)	128, 171, 190, 458
FaiI	YATR	7 cut(s)	126, 164, 169, 188, 365, 369, 456
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	124, 167, 186, 454
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	5 cut(s)	16, 19, 253, 432, 476
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	5 cut(s)	16, 19, 253, 432, 476
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	5 cut(s)	16, 19, 253, 432, 476
HaeIII	GGCC	5 cut(s)	21, 151, 272, 281, 309
HapII	CCGG	7 cut(s)	152, 273, 296, 306, 334, 353, 464
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	128, 171, 190, 458
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HpaII	CCGG	7 cut(s)	152, 273, 296, 306, 334, 353, 464
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	226, 388
Hpy188I	TCNGA	3 cut(s)	315, 379, 452
Hpy188III	TCNNGA	3 cut(s)	98, 125, 353
Hpy8I	GTNNAC	2 cut(s)	226, 388
Hpy99I	CGWCG	2 cut(s)	122, 315
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	5 cut(s)	120, 286, 291, 426, 503
HpyCH4V	TGCA	3 cut(s)	180, 246, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 252, 278
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	5 cut(s)	120, 286, 291, 426, 503
Hsp92II	CATG	4 cut(s)	128, 171, 190, 458
HspAI	GCGC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	352
KroI	GCCGGC	2 cut(s)	272, 305
KroNI	GCCGGC	2 cut(s)	274, 307
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 159
LmnI	GCTCC	2 cut(s)	302, 355
Lsp1109I	GCAGC	3 cut(s)	27, 239, 418
MaeII	ACGT	5 cut(s)	120, 286, 291, 426, 503
MaeIII	GTNAC	2 cut(s)	203, 287
MalI	GATC	2 cut(s)	90, 161
MboI	GATC	2 cut(s)	88, 159
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	283, 390
MmeI	TCCRAC	2 cut(s)	293, 475
MnlI	CCTC	6 cut(s)	243, 252, 336, 364, 373, 474
MroI	TCCGGA	1 cut(s)	352
MroNI	GCCGGC	2 cut(s)	272, 305
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	7 cut(s)	152, 273, 296, 306, 334, 353, 464
MspR9I	CCNGG	3 cut(s)	33, 335, 464
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	177, 252, 278
NaeI	GCCGGC	2 cut(s)	274, 307
NciI	CCSGG	2 cut(s)	335, 464
NdeII	GATC	2 cut(s)	88, 159
NgoMIV	GCCGGC	2 cut(s)	272, 305
NlaIII	CATG	4 cut(s)	128, 171, 190, 458
NlaIV	GGNNCC	4 cut(s)	280, 281, 304, 357
NspI	RCATGY	1 cut(s)	458
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	454
PdiI	GCCGGC	2 cut(s)	274, 307
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	5 cut(s)	17, 20, 254, 433, 477
PmaCI	CACGTG	1 cut(s)	427
PmlI	CACGTG	1 cut(s)	427
Ppu21I	YACGTR	2 cut(s)	287, 427
PscI	ACATGT	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	280, 281, 304, 357
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	279, 280
RsaI	GTAC	2 cut(s)	263, 438
RsaNI	GTAC	2 cut(s)	262, 437
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	5 cut(s)	16, 19, 253, 432, 476
Sau3AI	GATC	2 cut(s)	88, 159
Sau96I	GGNCC	2 cut(s)	279, 280
ScrFI	CCNGG	3 cut(s)	33, 335, 464
SduI	GDGCHC	2 cut(s)	283, 390
SfiI	GGCCNNNNNGGCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	96
SnaBI	TACGTA	1 cut(s)	287
SsiI	CCGC	5 cut(s)	18, 276, 434, 475, 478
StyD4I	CCNGG	3 cut(s)	31, 333, 462
StyI	CCWWGG	2 cut(s)	22, 173
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	5 cut(s)	123, 289, 294, 429, 506
TaqI	TCGA	1 cut(s)	235
TauI	GCSGC	2 cut(s)	21, 478
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	3 cut(s)	15, 252, 431
TspDTI	ATGAA	2 cut(s)	113, 158
TspGWI	ACGGA	1 cut(s)	318
Van91I	CCANNNNNTGG	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	386
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.