Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

43413218 .. 43413709

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1301100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTCAGGTCCAAAACGGCCAAGATGTTCATGGAATTAAGCTTTTCGGGAAAACGATTACACTGCAGAGCAGATCATCACAAGTTAAAGAAGAACCCATAAAAGATGATCAAATGGTGGAGAAGCGGCCAGATAGGATCATACCATGCCCAAGATGCAAAAGTATGGAGACTAAATTTTGTTACTTCAATAACTACAATGTTAAGCAGCCTAGATACTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTACGGAACGTGCCTGTGGGGGCCGGGCGACGGAAAACCAAGCCGCCTTGTCAGGGGATGGCCGGGTTCCCGGAGGGTTGTATATATGAGGGTTCAGATGTGGTGCACCAGTTTGAGTTGGATGGGGTGGTGGAAGAGTGGCATGTGGCGGCAGAACAAGGCGGTTTTCACCAAGTTTTCCCGGTGCTGAAGAGGCGGAGGAGCGGCTCAGGTGGTCAACCATGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

164

Amino Acids

18.34

Weight (kDa)

9.17

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	46 - 101	2e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	465
AciI	CCGC	7 cut(s)	127, 255, 305, 410, 423, 457, 465
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	4 cut(s)	19, 128, 249, 321
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	291, 314
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	2 cut(s)	43, 489
AluI	AGCT	2 cut(s)	43, 489
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	6 cut(s)	19, 128, 249, 258, 282, 321
ApaI	GGGCCC	1 cut(s)	262
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	3 cut(s)	208, 231, 486
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	10, 258, 259, 282
AsuC2I	CCSGG	4 cut(s)	286, 325, 332, 443
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	262, 369
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	218, 220
BccI	CCATC	2 cut(s)	313, 377
BceAI	ACGGC	2 cut(s)	34, 264
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	4 cut(s)	286, 325, 332, 443
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	7 cut(s)	128, 209, 232, 305, 411, 466, 487
BlsI	GCNGC	7 cut(s)	129, 210, 233, 306, 412, 467, 488
Bme1390I	CCNGG	4 cut(s)	286, 325, 332, 443
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	4 cut(s)	10, 258, 259, 282
BmiI	GGNNCC	4 cut(s)	259, 260, 283, 329
BmrFI	CCNGG	4 cut(s)	286, 325, 332, 443
BmsI	GCATC	1 cut(s)	146
Bpu10I	CCTNAGC	2 cut(s)	6, 469
BpuMI	CCSGG	4 cut(s)	286, 325, 332, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 314
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	248, 370
BseGI	GGATG	2 cut(s)	324, 388
BseLI	CCNNNNNNNGG	2 cut(s)	291, 314
BseMII	CTCAG	2 cut(s)	20, 483
BseNI	ACTGG	2 cut(s)	248, 370
BseRI	GAGGAG	1 cut(s)	475
BseSI	GKGCMC	2 cut(s)	262, 369
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	218, 220
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	6 cut(s)	21, 130, 251, 260, 284, 323
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	5 cut(s)	252, 285, 324, 332, 443
BslI	CCNNNNNNNGG	2 cut(s)	291, 314
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	6 cut(s)	21, 130, 251, 260, 284, 323
Bsp120I	GGGCCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	262, 369
Bsp143I	GATC	3 cut(s)	74, 109, 138
BspACI	CCGC	7 cut(s)	127, 255, 305, 410, 423, 457, 465
BspANI	GGCC	6 cut(s)	21, 130, 251, 260, 284, 323
BspCNI	CTCAG	2 cut(s)	19, 482
BspLI	GGNNCC	4 cut(s)	259, 260, 283, 329
BspMAI	CTGCAG	1 cut(s)	69
BspPI	GGATC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	248, 370
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	3 cut(s)	74, 109, 138
Bst6I	CTCTTC	2 cut(s)	390, 446
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	6, 469
BstF5I	GGATG	2 cut(s)	324, 388
BstKTI	GATC	3 cut(s)	77, 112, 141
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	74, 109, 138
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 231, 257, 454
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	4 cut(s)	284, 323, 330, 441
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	2 cut(s)	262, 369
BstV1I	GCAGC	2 cut(s)	218, 220
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	6 cut(s)	21, 130, 251, 260, 284, 323
BtsCI	GGATG	2 cut(s)	324, 388
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	10, 258, 259, 282
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	4 cut(s)	32, 147, 404, 483
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	6, 469
DpnI	GATC	3 cut(s)	76, 111, 140
DpnII	GATC	3 cut(s)	74, 109, 138
EaeI	YGGCCR	4 cut(s)	19, 128, 249, 321
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	390, 446
EarI	CTCTTC	2 cut(s)	390, 446
EciI	GGCGGA	1 cut(s)	472
EclXI	CGGCCG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	470
EcoO109I	RGGNCCY	2 cut(s)	258, 259
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	4 cut(s)	35, 150, 407, 486
FatI	CATG	4 cut(s)	31, 146, 403, 482
FauI	CCCGC	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	7 cut(s)	128, 209, 232, 305, 411, 466, 487
FokI	GGATG	2 cut(s)	331, 395
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	7 cut(s)	128, 209, 232, 305, 411, 466, 487
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	7 cut(s)	128, 209, 232, 305, 411, 466, 487
HaeIII	GGCC	6 cut(s)	21, 130, 251, 260, 284, 323
HapII	CCGG	5 cut(s)	252, 285, 324, 332, 443
Hin1II	CATG	4 cut(s)	35, 150, 407, 486
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	41
HpaII	CCGG	5 cut(s)	252, 285, 324, 332, 443
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	367, 479
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	367, 479
Hpy99I	CGWCG	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	67, 159, 225, 367, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 231, 257, 454
HpyF3I	CTNAG	2 cut(s)	6, 469
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	35, 150, 407, 486
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	74, 109, 138
LmnI	GCTCC	1 cut(s)	462
Lsp1109I	GCAGC	2 cut(s)	218, 220
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	76, 111, 140
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	3 cut(s)	74, 109, 138
MboII	GAAGA	3 cut(s)	104, 407, 463
MhlI	GDGCHC	2 cut(s)	262, 369
MluCI	AATT	2 cut(s)	36, 176
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	5 cut(s)	231, 328, 343, 447, 453
MroNI	GCCGGC	1 cut(s)	251
MseI	TTAA	3 cut(s)	39, 87, 204
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	5 cut(s)	252, 285, 324, 332, 443
MspR9I	CCNGG	4 cut(s)	286, 325, 332, 443
MwoI	GCNNNNNNNGC	4 cut(s)	156, 231, 257, 454
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	4 cut(s)	286, 325, 332, 443
NdeII	GATC	3 cut(s)	74, 109, 138
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	35, 150, 407, 486
NlaIV	GGNNCC	4 cut(s)	259, 260, 283, 329
NspI	RCATGY	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	7 cut(s)	129, 210, 233, 306, 412, 467, 488
PspN4I	GGNNCC	4 cut(s)	259, 260, 283, 329
PspOMI	GGGCCC	1 cut(s)	258
PspPI	GGNCC	4 cut(s)	10, 258, 259, 282
PstI	CTGCAG	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	489
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	39, 87, 204
SatI	GCNGC	7 cut(s)	128, 209, 232, 305, 411, 466, 487
Sau3AI	GATC	3 cut(s)	74, 109, 138
Sau96I	GGNCC	4 cut(s)	10, 258, 259, 282
ScrFI	CCNGG	4 cut(s)	286, 325, 332, 443
SduI	GDGCHC	2 cut(s)	262, 369
SetI	ASST	6 cut(s)	12, 45, 242, 273, 475, 491
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	65
SfiI	GGCCNNNNNGGCC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	2 cut(s)	36, 176
SsiI	CCGC	7 cut(s)	127, 255, 305, 410, 423, 457, 465
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	4 cut(s)	284, 323, 330, 441
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	36, 176
TauI	GCSGC	4 cut(s)	130, 307, 413, 468
Tru1I	TTAA	3 cut(s)	39, 87, 204
Tru9I	TTAA	3 cut(s)	39, 87, 204
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	3 cut(s)	208, 231, 486
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	2 cut(s)	280, 307
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.