Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

87248034 .. 87249464

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTGAGGTCAGCAGCGGCCAAGATGTGCCCGGAATTAAGCTGTTTGGGACAACCATTACATTGCAGAACAAACAAGTAGTACTAAAAGATGATCATCATCATCGCCAACCCAAGAAAGCCGACGACGTTCATGACCAAACGGTGGAGATGAAGAGGCCGGAGAAGATCATACCATGCCCTAGATGCAAGAGCATGGAGACCAAGTTTTGTTACTTCAATAACTACAATGTAAACCAGCCTAGACACTTCTGCAAGGGCTGTCAGAGGTACTGGACGGCCGGCGGGGCCCTACGGAACGTGCCTGTGGGAGCCGGCCGTCGGAAAACCAAACCTCCGGGCCGGGAATTGGCCGGTTTCCCGGAGGGTTGTTTGTATGACGCTTCACAGGTGGTGCACCAGTTTGAGCTGGATGGGGTGGTGGAAGAGTGGCACGTGGCGGCGGTACAAGGCGATTTCCGACATGTTTTTCCGGTGGTGAAGCGGCGGCGGAGTGGCTCAGGTGGTCAAACGAATGCCTCTTCAATTTACTCCGAAATGATCTCTTCTAATCTCTCAAACATTCCTGACTCCCTCGTTGATCCCAAAAGAAGGATGAGAAACAATTTAAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

205

Amino Acids

23.13

Weight (kDa)

9.46

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	56 - 111	2.6e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	145
AciI	CCGC	7 cut(s)	18, 285, 440, 443, 484, 487, 490
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	4 cut(s)	19, 279, 316, 351
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	3 cut(s)	84, 272, 447
AfiI	CCNNNNNNNGG	4 cut(s)	145, 321, 349, 591
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	220, 525
AluBI	AGCT	2 cut(s)	43, 409
AluI	AGCT	2 cut(s)	43, 409
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	7 cut(s)	19, 158, 279, 288, 316, 340, 351
ApaI	GGGCCC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	15
AspS9I	GGNCC	3 cut(s)	288, 289, 340
AsuC2I	CCSGG	4 cut(s)	33, 339, 344, 362
AsuHPI	GGTGA	1 cut(s)	490
BaeGI	GKGCMC	3 cut(s)	33, 292, 399
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	2 cut(s)	294, 303
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	4 cut(s)	33, 339, 344, 362
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	183, 243
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	5 cut(s)	16, 19, 441, 485, 488
BlsI	GCNGC	5 cut(s)	17, 20, 442, 486, 489
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	4 cut(s)	33, 339, 344, 362
BmgT120I	GGNCC	3 cut(s)	288, 289, 340
BmiI	GGNNCC	3 cut(s)	289, 290, 313
BmrFI	CCNGG	4 cut(s)	33, 339, 344, 362
BmsI	GCATC	1 cut(s)	176
Bpu10I	CCTNAGC	2 cut(s)	6, 499
BpuMI	CCSGG	4 cut(s)	33, 339, 344, 362
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	2 cut(s)	96, 99
BsaI	GGTCTC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 319, 349
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 321, 349, 591
Bse118I	RCCGGY	3 cut(s)	281, 314, 353
Bse1I	ACTGG	2 cut(s)	278, 400
Bse3DI	GCAATG	1 cut(s)	62
Bse8I	GATNNNNATC	2 cut(s)	96, 99
BseGI	GGATG	2 cut(s)	418, 600
BseJI	GATNNNNATC	2 cut(s)	96, 99
BseLI	CCNNNNNNNGG	4 cut(s)	145, 321, 349, 591
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	278, 400
BseSI	GKGCMC	3 cut(s)	33, 292, 399
BseX3I	CGGCCG	2 cut(s)	279, 316
BseXI	GCAGC	1 cut(s)	27
Bsh1285I	CGRYCG	2 cut(s)	282, 319
BshFI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
BsiEI	CGRYCG	2 cut(s)	282, 319
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	4 cut(s)	145, 321, 349, 591
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
Bso31I	GGTCTC	1 cut(s)	194
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	33, 292, 399
Bsp143I	GATC	4 cut(s)	94, 168, 540, 580
BspACI	CCGC	7 cut(s)	18, 285, 440, 443, 484, 487, 490
BspANI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
BspCNI	CTCAG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	289, 290, 313
BspPI	GGATC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	281, 314, 353
BsrI	ACTGG	2 cut(s)	278, 400
BssAI	RCCGGY	3 cut(s)	281, 314, 353
BssMI	GATC	4 cut(s)	94, 168, 540, 580
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	4 cut(s)	149, 420, 526, 550
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	283, 316
BstDEI	CTNAG	2 cut(s)	6, 499
BstF5I	GGATG	2 cut(s)	418, 600
BstKTI	GATC	4 cut(s)	97, 171, 543, 583
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	94, 168, 540, 580
BstMCI	CGRYCG	2 cut(s)	282, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 287
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	4 cut(s)	31, 337, 342, 360
BstSLI	GKGCMC	3 cut(s)	33, 292, 399
BstV1I	GCAGC	1 cut(s)	27
BstZI	CGGCCG	2 cut(s)	279, 316
BsuRI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	418, 600
Cac8I	GCNNGC	2 cut(s)	283, 316
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	3 cut(s)	281, 314, 353
Cfr13I	GGNCC	3 cut(s)	288, 289, 340
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	83, 271, 446
CviAII	CATG	4 cut(s)	134, 177, 196, 464
CviQI	GTAC	3 cut(s)	83, 271, 446
DdeI	CTNAG	2 cut(s)	6, 499
DpnI	GATC	4 cut(s)	96, 170, 542, 582
DpnII	GATC	4 cut(s)	94, 168, 540, 580
DraI	TTTAAA	1 cut(s)	609
EaeI	YGGCCR	4 cut(s)	19, 279, 316, 351
EagI	CGGCCG	2 cut(s)	279, 316
Eam1104I	CTCTTC	4 cut(s)	149, 420, 526, 550
EarI	CTCTTC	4 cut(s)	149, 420, 526, 550
EciI	GGCGGA	1 cut(s)	505
EclXI	CGGCCG	2 cut(s)	279, 316
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	194
Eco52I	CGGCCG	2 cut(s)	279, 316
Eco72I	CACGTG	1 cut(s)	436
EcoO109I	RGGNCCY	2 cut(s)	288, 289
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	4 cut(s)	137, 180, 199, 467
FaiI	YATR	7 cut(s)	135, 173, 178, 197, 378, 465, 616
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	133, 176, 195, 463
FauI	CCCGC	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	16, 19, 441, 485, 488
FokI	GGATG	2 cut(s)	425, 607
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	5 cut(s)	16, 19, 441, 485, 488
FspBI	CTAG	2 cut(s)	183, 243
GluI	GCNGC	5 cut(s)	16, 19, 441, 485, 488
HaeIII	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
HapII	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	4 cut(s)	137, 180, 199, 467
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	2 cut(s)	235, 397
Hpy188I	TCNGA	4 cut(s)	267, 324, 461, 535
Hpy188III	TCNNGA	2 cut(s)	134, 566
Hpy8I	GTNNAC	2 cut(s)	235, 397
Hpy99I	CGWCG	3 cut(s)	128, 131, 324
HpyAV	CCTTC	1 cut(s)	585
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	3 cut(s)	129, 300, 435
HpyCH4V	TGCA	4 cut(s)	67, 189, 255, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 287
HpyF3I	CTNAG	2 cut(s)	6, 499
HpySE526I	ACGT	3 cut(s)	129, 300, 435
Hsp92II	CATG	4 cut(s)	137, 180, 199, 467
KroI	GCCGGC	2 cut(s)	281, 314
KroNI	GCCGGC	2 cut(s)	283, 316
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	94, 168, 540, 580
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	183, 243
MaeII	ACGT	3 cut(s)	129, 300, 435
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	96, 170, 542, 582
MboI	GATC	4 cut(s)	94, 168, 540, 580
MboII	GAAGA	5 cut(s)	166, 178, 437, 513, 537
MhlI	GDGCHC	3 cut(s)	33, 292, 399
MluCI	AATT	4 cut(s)	36, 347, 525, 604
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	302, 484
MnlI	CCTC	6 cut(s)	150, 261, 345, 358, 529, 584
MroNI	GCCGGC	2 cut(s)	281, 314
MseI	TTAA	2 cut(s)	39, 608
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
MspR9I	CCNGG	4 cut(s)	33, 339, 344, 362
Mva1269I	GAATGC	1 cut(s)	520
MwoI	GCNNNNNNNGC	2 cut(s)	186, 287
NaeI	GCCGGC	2 cut(s)	283, 316
NciI	CCSGG	4 cut(s)	33, 339, 344, 362
NdeII	GATC	4 cut(s)	94, 168, 540, 580
NgoMIV	GCCGGC	2 cut(s)	281, 314
NlaIII	CATG	4 cut(s)	137, 180, 199, 467
NlaIV	GGNNCC	3 cut(s)	289, 290, 313
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	463
PctI	GAATGC	1 cut(s)	520
PdiI	GCCGGC	2 cut(s)	283, 316
PflMI	CCANNNNNTGG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	5 cut(s)	17, 20, 442, 486, 489
PleI	GAGTC	1 cut(s)	563
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	563
Ppu21I	YACGTR	1 cut(s)	436
PscI	ACATGT	1 cut(s)	463
PspCI	CACGTG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	289, 290, 313
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	288, 289, 340
RsaI	GTAC	3 cut(s)	84, 272, 447
RsaNI	GTAC	3 cut(s)	83, 271, 446
SaqAI	TTAA	2 cut(s)	39, 608
SatI	GCNGC	5 cut(s)	16, 19, 441, 485, 488
Sau3AI	GATC	4 cut(s)	94, 168, 540, 580
Sau96I	GGNCC	3 cut(s)	288, 289, 340
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	4 cut(s)	33, 339, 344, 362
SduI	GDGCHC	3 cut(s)	33, 292, 399
SfaNI	GCATC	1 cut(s)	176
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
Sse9I	AATT	4 cut(s)	36, 347, 525, 604
SsiI	CCGC	7 cut(s)	18, 285, 440, 443, 484, 487, 490
SspMI	CTAG	2 cut(s)	183, 243
StyD4I	CCNGG	4 cut(s)	31, 337, 342, 360
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	3 cut(s)	132, 303, 438
TasI	AATT	4 cut(s)	36, 347, 525, 604
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	4 cut(s)	21, 443, 487, 490
Tru1I	TTAA	2 cut(s)	39, 608
Tru9I	TTAA	2 cut(s)	39, 608
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	122, 167
TspGWI	ACGGA	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	395
XceI	RCATGY	1 cut(s)	467
XspI	CTAG	2 cut(s)	183, 243
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.