Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

28770995 .. 28771372

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGGAGAAGCGGCCAGATAGGATCATACCATGCCCAAGATGCAAAAGCATGGAGACTAAATTTTGTTACTTCAATAACTACAATGTTAACCAGCCTAGACACTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTACGGAACGTGCCTGTGGGGGCTGGGCGACGGAAAACCAAGCCGCCTTGTCAGGGGATGGCCGGGTTCCCGGAGGGTTGTGTATATGAGGGTTCAGATGTGGTGCACCAGTTTGAGTTGGATGGGGTGGTGGAAGAGTGGCATGTGGCCGCAGAACAAGGCGGGTTTCACCAAGTTTTCCCGGTGCTGAAGAGGCGGAGGAGCGGCTCAGGTGGTCAACCATGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

9.14

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	8 - 63	1.2e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	351
AciI	CCGC	7 cut(s)	13, 141, 191, 297, 309, 343, 351
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	4 cut(s)	14, 135, 207, 294
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	1 cut(s)	375
AluI	AGCT	1 cut(s)	375
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	50
Alw44I	GTGCAC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	5 cut(s)	14, 135, 144, 207, 294
ApaI	GGGCCC	1 cut(s)	148
ApaLI	GTGCAC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	117, 372
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	144, 145
AsuC2I	CCSGG	3 cut(s)	211, 218, 329
AsuHPI	GGTGA	1 cut(s)	308
BaeGI	GKGCMC	2 cut(s)	148, 255
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	199, 263
BceAI	ACGGC	1 cut(s)	150
BcnI	CCSGG	3 cut(s)	211, 218, 329
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	6 cut(s)	14, 118, 191, 297, 352, 373
BlsI	GCNGC	6 cut(s)	15, 119, 192, 298, 353, 374
Bme1390I	CCNGG	3 cut(s)	211, 218, 329
BmgT120I	GGNCC	2 cut(s)	144, 145
BmiI	GGNNCC	3 cut(s)	145, 146, 215
BmrFI	CCNGG	3 cut(s)	211, 218, 329
BmsI	GCATC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	355
BpuMI	CCSGG	3 cut(s)	211, 218, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	134, 256
BseGI	GGATG	2 cut(s)	210, 274
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	134, 256
BseRI	GAGGAG	1 cut(s)	361
BseSI	GKGCMC	2 cut(s)	148, 255
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	16, 137, 146, 209, 296
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	4 cut(s)	138, 210, 218, 329
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	5 cut(s)	16, 137, 146, 209, 296
Bsp120I	GGGCCC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	148, 255
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	7 cut(s)	13, 141, 191, 297, 309, 343, 351
BspANI	GGCC	5 cut(s)	16, 137, 146, 209, 296
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	3 cut(s)	145, 146, 215
BspPI	GGATC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	134, 256
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	276, 332
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	210, 274
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 117, 143, 340
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	209, 216, 327
BstSLI	GKGCMC	2 cut(s)	148, 255
BstV1I	GCAGC	1 cut(s)	104
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	5 cut(s)	16, 137, 146, 209, 296
BtsCI	GGATG	2 cut(s)	210, 274
Cac8I	GCNNGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	144, 145
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	4 cut(s)	33, 52, 290, 369
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	4 cut(s)	14, 135, 207, 294
EagI	CGGCCG	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	276, 332
EarI	CTCTTC	2 cut(s)	276, 332
EciI	GGCGGA	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	148
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	356
EcoO109I	RGGNCCY	2 cut(s)	144, 145
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	4 cut(s)	36, 55, 293, 372
FaiI	YATR	7 cut(s)	29, 34, 53, 232, 234, 291, 370
FatI	CATG	4 cut(s)	32, 51, 289, 368
FauI	CCCGC	2 cut(s)	134, 302
Fnu4HI	GCNGC	6 cut(s)	14, 118, 191, 297, 352, 373
FokI	GGATG	2 cut(s)	217, 281
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	6 cut(s)	14, 118, 191, 297, 352, 373
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	6 cut(s)	14, 118, 191, 297, 352, 373
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	5 cut(s)	16, 137, 146, 209, 296
HapII	CCGG	4 cut(s)	138, 210, 218, 329
Hin1II	CATG	4 cut(s)	36, 55, 293, 372
HincII	GTYRAC	2 cut(s)	91, 365
HindII	GTYRAC	2 cut(s)	91, 365
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	4 cut(s)	138, 210, 218, 329
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	91, 253, 365
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	91, 253, 365
Hpy99I	CGWCG	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	45, 111, 253, 372
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 117, 143, 340
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	36, 55, 293, 372
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	26
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	293, 349
MhlI	GDGCHC	2 cut(s)	148, 255
MluCI	AATT	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	5 cut(s)	117, 214, 229, 333, 339
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	4 cut(s)	138, 210, 218, 329
MspR9I	CCNGG	3 cut(s)	211, 218, 329
MwoI	GCNNNNNNNGC	4 cut(s)	42, 117, 143, 340
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	3 cut(s)	211, 218, 329
NdeII	GATC	1 cut(s)	24
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	36, 55, 293, 372
NlaIV	GGNNCC	3 cut(s)	145, 146, 215
NspI	RCATGY	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	216
PkrI	GCNGC	6 cut(s)	15, 119, 192, 298, 353, 374
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	145, 146, 215
PspOMI	GGGCCC	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	144, 145
PvuII	CAGCTG	1 cut(s)	375
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	6 cut(s)	14, 118, 191, 297, 352, 373
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	144, 145
ScrFI	CCNGG	3 cut(s)	211, 218, 329
SduI	GDGCHC	2 cut(s)	148, 255
SetI	ASST	4 cut(s)	128, 159, 361, 377
SfaNI	GCATC	1 cut(s)	32
SfiI	GGCCNNNNNGGCC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	7 cut(s)	13, 141, 191, 297, 309, 343, 351
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	3 cut(s)	209, 216, 327
TaiI	ACGT	1 cut(s)	159
TasI	AATT	1 cut(s)	62
TauI	GCSGC	4 cut(s)	16, 193, 299, 354
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	2 cut(s)	117, 372
TspGWI	ACGGA	2 cut(s)	166, 193
VneI	GTGCAC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.