Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Reverse (-)

2932475 .. 2932963

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTGAGGTCCAAAACGGCCAAGATGTCCCGGGAATTAAGCTATTCGGGACAACGATTACATTGCAAAATAGACCACAAGTAAAAGAAGAACCCAAGAAAGCTGATCAAACCGCGGAGAAGAGGCCAGATAGGATCATACCATGCCCAAGATGCAAAAGCATGGAGACTAAATTTTGTTACTTCAATAACTACAACGTTAACCAGCCAAGACACTTCTGCAAGGGCTGCCAGAGGTACTGGACAGCTGGCGGGGCTCTACGGAACGTGCCTGTGGGGGCCGGTCGACGGAAAACCAAGCCGCCGTGTCGAGGGCTGGCCGGATTCCCAGAGGCTTGTATATACGAGAGTTCAGAGGTGGTGCACCAGTTTGAGTTGGATGGGGTTATGGAAGAGTGGCACATGGCCGCGGCACAAGGCGGTTTTCACCAAGTTTTTCCAGTGGTGAAGAGGCGGAGGAGCAGCTCAGGTGGTCAAACATGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

163

Amino Acids

18.19

Weight (kDa)

9.32

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	286
AccII	CGCG	2 cut(s)	116, 410
AciI	CCGC	8 cut(s)	114, 116, 252, 302, 408, 410, 420, 454
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	3 cut(s)	19, 318, 405
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	288, 311
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	5 cut(s)	43, 104, 248, 465, 486
AluI	AGCT	5 cut(s)	43, 104, 248, 465, 486
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	161
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	5 cut(s)	19, 125, 279, 318, 405
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	3 cut(s)	228, 462, 483
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	10, 279
AsuC2I	CCSGG	2 cut(s)	32, 33
AsuHPI	GGTGA	2 cut(s)	419, 457
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	366
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	215, 474
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	2 cut(s)	34, 289
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	2 cut(s)	32, 33
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	6 cut(s)	229, 302, 408, 411, 463, 484
BlsI	GCNGC	6 cut(s)	230, 303, 409, 412, 464, 485
Bme1390I	CCNGG	2 cut(s)	32, 33
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	10, 279
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	32, 33
BmsI	GCATC	1 cut(s)	143
Bpu10I	CCTNAGC	2 cut(s)	6, 466
BpuMI	CCSGG	2 cut(s)	32, 33
BsaJI	CCNNGG	3 cut(s)	31, 114, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 311
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	245, 367, 440
Bse3DI	GCAATG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	31, 114, 408
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	288, 311
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	245, 367, 440
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	215, 474
Bsh1236I	CGCG	2 cut(s)	116, 410
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	5 cut(s)	21, 127, 281, 320, 407
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	32, 282, 321
BslFI	GGGAC	2 cut(s)	14, 64
BslI	CCNNNNNNNGG	2 cut(s)	288, 311
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	14, 64
BsnI	GGCC	5 cut(s)	21, 127, 281, 320, 407
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	259, 366
Bsp143I	GATC	2 cut(s)	106, 135
BspACI	CCGC	8 cut(s)	114, 116, 252, 302, 408, 410, 420, 454
BspANI	GGCC	5 cut(s)	21, 127, 281, 320, 407
BspCNI	CTCAG	1 cut(s)	479
BspFNI	CGCG	2 cut(s)	116, 410
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	245, 367, 440
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	31, 114, 408
BssMI	GATC	2 cut(s)	106, 135
Bst6I	CTCTTC	3 cut(s)	116, 387, 443
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	250, 318
BstDEI	CTNAG	2 cut(s)	6, 466
BstDSI	CCRYGG	2 cut(s)	114, 408
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	116, 410
BstKTI	GATC	2 cut(s)	109, 138
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	106, 135
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 228, 254
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	30, 31
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	2 cut(s)	116, 410
BstV1I	GCAGC	2 cut(s)	215, 474
BsuRI	GGCC	5 cut(s)	21, 127, 281, 320, 407
BtgI	CCRYGG	2 cut(s)	114, 408
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	250, 318
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	10, 279
Cfr42I	CCGCGG	2 cut(s)	117, 411
Cfr9I	CCCGGG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	144, 163, 403, 480
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	6, 466
DpnI	GATC	2 cut(s)	108, 137
DpnII	GATC	2 cut(s)	106, 135
EaeI	YGGCCR	3 cut(s)	19, 318, 405
Eam1104I	CTCTTC	3 cut(s)	116, 387, 443
EarI	CTCTTC	3 cut(s)	116, 387, 443
EciI	GGCGGA	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	4 cut(s)	147, 166, 406, 483
FaiI	YATR	8 cut(s)	140, 145, 164, 341, 343, 389, 404, 481
FaqI	GGGAC	2 cut(s)	14, 64
FatI	CATG	4 cut(s)	143, 162, 402, 479
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	6 cut(s)	229, 302, 408, 411, 463, 484
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	6 cut(s)	229, 302, 408, 411, 463, 484
GluI	GCNGC	6 cut(s)	229, 302, 408, 411, 463, 484
HaeIII	GGCC	5 cut(s)	21, 127, 281, 320, 407
HapII	CCGG	3 cut(s)	32, 282, 321
Hin1II	CATG	4 cut(s)	147, 166, 406, 483
HincII	GTYRAC	2 cut(s)	202, 287
HindII	GTYRAC	2 cut(s)	202, 287
HinfI	GANTC	1 cut(s)	324
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	3 cut(s)	32, 282, 321
HphI	GGTGA	2 cut(s)	419, 457
Hpy166II	GTNNAC	3 cut(s)	202, 287, 364
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	3 cut(s)	202, 287, 364
Hpy99I	CGWCG	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	198, 267
HpyCH4V	TGCA	5 cut(s)	67, 156, 222, 364, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 228, 254
HpyF3I	CTNAG	2 cut(s)	6, 466
HpySE526I	ACGT	2 cut(s)	198, 267
Hsp92II	CATG	4 cut(s)	147, 166, 406, 483
Ksp22I	TGATCA	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	202
KspI	CCGCGG	2 cut(s)	117, 411
Kzo9I	GATC	2 cut(s)	106, 135
LmnI	GCTCC	1 cut(s)	459
Lsp1109I	GCAGC	2 cut(s)	215, 474
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	2 cut(s)	198, 267
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	108, 137
MboI	GATC	2 cut(s)	106, 135
MboII	GAAGA	4 cut(s)	101, 133, 404, 460
MhlI	GDGCHC	2 cut(s)	259, 366
MluCI	AATT	2 cut(s)	36, 173
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	117, 228, 305, 325, 349, 444, 450
MseI	TTAA	2 cut(s)	39, 201
MspA1I	CMGCKG	4 cut(s)	116, 248, 410, 486
MspI	CCGG	3 cut(s)	32, 282, 321
MspR9I	CCNGG	2 cut(s)	32, 33
MvnI	CGCG	2 cut(s)	116, 410
MwoI	GCNNNNNNNGC	3 cut(s)	153, 228, 254
NciI	CCSGG	2 cut(s)	32, 33
NdeII	GATC	2 cut(s)	106, 135
NlaIII	CATG	4 cut(s)	147, 166, 406, 483
NlaIV	GGNNCC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	6 cut(s)	230, 303, 409, 412, 464, 485
Psp1406I	AACGTT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	10, 279
PvuII	CAGCTG	2 cut(s)	248, 486
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacII	CCGCGG	2 cut(s)	117, 411
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	39, 201
SatI	GCNGC	6 cut(s)	229, 302, 408, 411, 463, 484
Sau3AI	GATC	2 cut(s)	106, 135
Sau96I	GGNCC	2 cut(s)	10, 279
ScrFI	CCNGG	2 cut(s)	32, 33
SduI	GDGCHC	2 cut(s)	259, 366
SfaNI	GCATC	1 cut(s)	143
Sfr303I	CCGCGG	2 cut(s)	117, 411
SgrBI	CCGCGG	2 cut(s)	117, 411
SinI	GGWCC	1 cut(s)	10
SmaI	CCCGGG	1 cut(s)	33
Sse9I	AATT	2 cut(s)	36, 173
SsiI	CCGC	8 cut(s)	114, 116, 252, 302, 408, 410, 420, 454
StyD4I	CCNGG	2 cut(s)	30, 31
TaiI	ACGT	2 cut(s)	201, 270
TaqI	TCGA	2 cut(s)	286, 310
TasI	AATT	2 cut(s)	36, 173
TauI	GCSGC	3 cut(s)	304, 410, 413
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	39, 201
Tru9I	TTAA	2 cut(s)	39, 201
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	3 cut(s)	228, 462, 483
TspGWI	ACGGA	2 cut(s)	277, 304
TspMI	CCCGGG	1 cut(s)	31
TspRI	CASTG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	483
XmaI	CCCGGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.