AT1G29640

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011961
Physical Location & Seq
Reverse (-)
10355638 .. 10356482
845 bp
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UTR
Exon/CDS
Intron
AT1G29640.1

Sequence Viewer

Length: 423 bp
ATGTCGGAAGAATTCGACGAATCTGAGATCATTTTCTCTGACAATTACTTTCCGATTCGCCGGCGAGAAGACGGTAACGAGAAAGAGAATAACCGTCCGGTGGATTTCCGGGAAAATTCTGAGAGAGTGTGGAACAAGTCATCTAGACGGAGTAAAACGACGCCGTTGCCTTCAGCGGTGACGGCGTTTTCTAGTTCGCTTCCGGTTAACATACCGATGAGGAGGTATTCGACGGAGGAGGAATATTCCGATGACGACGGAGGAAGGAAAATGATTCCGCCGCATTTGATAGTTGGACGGAGGATGGAAGGAGGTCAAATGGCGTTTTCCGTTTGTACAGGTAACGGAAGAACTCTTAAAGGACGAGATCTGAGCCGGGTTCGTAATTCGGTTCTCAAATTAACCGGGTTTTTGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

140

Amino Acids

16.04

Weight (kDa)

7.87

Isoelectric Point (pI)

74.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 40 - 139 6e-27 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 176, 278, 281
AcsI RAATTY 2 cut(s) 11, 115
AcuI CTGAAG 1 cut(s) 156
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
ApoI RAATTY 2 cut(s) 11, 115
AsuC2I CCSGG 3 cut(s) 110, 377, 406
AsuHPI GGTGA 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 148, 198
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BcnI CCSGG 3 cut(s) 110, 377, 406
BfaI CTAG 2 cut(s) 144, 192
BglII AGATCT 1 cut(s) 367
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 3 cut(s) 110, 377, 406
BmrFI CCNGG 3 cut(s) 110, 377, 406
BpiI GAAGAC 1 cut(s) 75
BpuMI CCSGG 3 cut(s) 110, 377, 406
BsaHI GRCGYC 1 cut(s) 161
BsaWI WCCGGW 2 cut(s) 97, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 60
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 15, 111, 362
BseRI GAGGAG 2 cut(s) 235, 251
BsiSI CCGG 6 cut(s) 61, 98, 109, 203, 376, 405
BslI CCNNNNNNNGG 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 335
Bsp143I GATC 2 cut(s) 27, 367
BspACI CCGC 3 cut(s) 176, 278, 281
BspCNI CTCAG 3 cut(s) 16, 112, 363
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 2 cut(s) 27, 367
BssNI GRCGYC 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 74, 95
BstACI GRCGYC 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 24, 120, 371
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 2 cut(s) 30, 370
BstMBI GATC 2 cut(s) 27, 367
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 108, 375, 404
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 60
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 336
CviJI RGCY 2 cut(s) 375, 419
CviKI_1 RGCY 2 cut(s) 375, 419
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 3 cut(s) 24, 120, 371
DpnI GATC 2 cut(s) 29, 369
DpnII GATC 2 cut(s) 27, 367
EciI GGCGGA 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 11
FaiI YATR 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 2 cut(s) 144, 192
GluI GCNGC 1 cut(s) 281
HapII CCGG 6 cut(s) 61, 98, 109, 203, 376, 405
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 3 cut(s) 20, 55, 274
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 6 cut(s) 61, 98, 109, 203, 376, 405
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 7 cut(s) 7, 25, 40, 54, 121, 250, 372
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 4 cut(s) 20, 163, 235, 260
HpyAV CCTTC 3 cut(s) 180, 258, 302
HpyCH4III ACNGT 2 cut(s) 74, 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 24, 120, 371
Hsp92I GRCGYC 1 cut(s) 161
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 27, 367
LpnPI CCDG 7 cut(s) 74, 111, 122, 216, 324, 389, 418
MaeI CTAG 2 cut(s) 144, 192
MaeIII GTNAC 3 cut(s) 74, 178, 341
MalI GATC 2 cut(s) 29, 369
MboI GATC 2 cut(s) 27, 367
MboII GAAGA 3 cut(s) 20, 80, 360
MflI RGATCY 1 cut(s) 367
MluCI AATT 5 cut(s) 11, 43, 115, 385, 398
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 7 cut(s) 213, 216, 229, 232, 254, 294, 305
MreI CGCCGGCG 1 cut(s) 60
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 3 cut(s) 207, 357, 401
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 6 cut(s) 61, 98, 109, 203, 376, 405
MspR9I CCNGG 3 cut(s) 110, 377, 406
MwoI GCNNNNNNNGC 1 cut(s) 182
NaeI GCCGGC 1 cut(s) 62
NciI CCSGG 3 cut(s) 110, 377, 406
NdeII GATC 2 cut(s) 27, 367
NgoMIV GCCGGC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 178
PdiI GCCGGC 1 cut(s) 62
PfeI GAWTC 3 cut(s) 20, 55, 274
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 282
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 3 cut(s) 207, 357, 401
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 27, 367
ScrFI CCNGG 3 cut(s) 110, 377, 406
SetI ASST 4 cut(s) 227, 316, 343, 421
SgrAI CRCCGGYG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 5 cut(s) 11, 43, 115, 385, 398
SsiI CCGC 3 cut(s) 176, 278, 281
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 144, 192
StyD4I CCNGG 3 cut(s) 108, 375, 404
TaaI ACNGT 2 cut(s) 74, 95
TaqI TCGA 2 cut(s) 15, 230
TasI AATT 5 cut(s) 11, 43, 115, 385, 398
TatI WGTACW 1 cut(s) 335
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 3 cut(s) 20, 55, 274
Tru1I TTAA 3 cut(s) 207, 357, 401
Tru9I TTAA 3 cut(s) 207, 357, 401
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspGWI ACGGA 6 cut(s) 163, 248, 273, 313, 319, 360
XapI RAATTY 2 cut(s) 11, 115
XbaI TCTAGA 1 cut(s) 143
XspI CTAG 2 cut(s) 144, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.