MD10G1269600.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011961
Physical Location & Seq
Reverse (-)
36215040 .. 36215471
432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1269600.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGCTGACTACGAGTTTCAAGAATCGGAGGTCATCTTCTCCATGGATAATCTCGACTTCGAAACCTGCTTGGATTTCCGGCGTCACCATCAAAACGACAAGTCGAATCTCTCGAAGAAGAAGAAAATGGGAAATGTTAACAACAACAACAACAGCAGCAACAATAATATTATCAAGTCGGTGCCGGTCAAAATCCCCGACAGCATGTTCGACCGGTTCAGCGGCTCCGAGGACGACAGCGACGGAGATTACTACAAGGAGGAGGAGTGGGACGGGGGAGAAATGGTGCCGCCGCATCTGATCGTGCGGCGGCGTATTGCAGGGAAGATGGCGTTCTCGGTGTGCACAGGAAACGGGCGGCCGCTTAAAGGAAGGGCTTTGAGTCAAGTCCGGAATACGATTCTCAGAATGACTGGTTTCTTGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

5.93

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 39 - 142 1.8e-25 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 181, 286
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 7 cut(s) 222, 290, 293, 307, 310, 358, 362
AcoI YGGCCR 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 368
AgeI ACCGGT 1 cut(s) 213
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw21I GWGCWC 1 cut(s) 347
Alw44I GTGCAC 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 390
AoxI GGCC 1 cut(s) 359
ApaLI GTGCAC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 156
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AsiGI ACCGGT 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 347
BanI GGYRCC 2 cut(s) 181, 286
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 168
BccI CCATC 2 cut(s) 96, 322
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 8 cut(s) 157, 223, 290, 293, 308, 311, 359, 362
BlsI GCNGC 8 cut(s) 158, 224, 291, 294, 309, 312, 360, 363
BmiI GGNNCC 3 cut(s) 183, 226, 288
BmsI GCATC 1 cut(s) 304
Bpu14I TTCGAA 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 42, 228
BsaWI WCCGGW 2 cut(s) 213, 390
BsaXI ACNNNNNCTCC 4 cut(s) 251, 270, 281, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 2 cut(s) 184, 213
Bse1I ACTGG 1 cut(s) 418
BseAI TCCGGA 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 42, 228
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 418
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 2 cut(s) 275, 278
BseSI GKGCMC 1 cut(s) 347
BseX3I CGGCCG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 168
Bsh1285I CGRYCG 2 cut(s) 214, 362
BshFI GGCC 1 cut(s) 361
BshNI GGYRCC 2 cut(s) 181, 286
BshTI ACCGGT 1 cut(s) 213
BsiEI CGRYCG 2 cut(s) 214, 362
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 4 cut(s) 79, 185, 214, 391
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 347
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 1 cut(s) 300
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 7 cut(s) 222, 290, 293, 307, 310, 358, 362
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 183, 226, 288
BspMI ACCTGC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 181, 286
BsrFI RCCGGY 2 cut(s) 184, 213
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 2 cut(s) 184, 213
BssECI CCNNGG 2 cut(s) 42, 228
BssMI GATC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 404, 429
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 1 cut(s) 303
BstMBI GATC 1 cut(s) 300
BstMCI CGRYCG 2 cut(s) 214, 362
BstNSI RCATGY 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 359
BsuRI GGCC 1 cut(s) 361
BtgI CCRYGG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 74
CciNI GCGGCCGC 1 cut(s) 359
Cfr10I RCCGGY 2 cut(s) 184, 213
CseI GACGC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 213
CviAII CATG 2 cut(s) 43, 205
CviJI RGCY 5 cut(s) 5, 225, 361, 377, 428
CviKI_1 RGCY 5 cut(s) 5, 225, 361, 377, 428
DdeI CTNAG 2 cut(s) 404, 429
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 359
EagI CGGCCG 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 46, 208
FaiI YATR 2 cut(s) 44, 206
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 42, 204
Fnu4HI GCNGC 8 cut(s) 157, 223, 290, 293, 308, 311, 359, 362
Fsp4HI GCNGC 8 cut(s) 157, 223, 290, 293, 308, 311, 359, 362
GluI GCNGC 8 cut(s) 157, 223, 290, 293, 308, 311, 359, 362
HaeIII GGCC 1 cut(s) 361
HapII CCGG 4 cut(s) 79, 185, 214, 391
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 46, 208
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 23, 106, 382, 400
HpaI GTTAAC 1 cut(s) 139
HpaII CCGG 4 cut(s) 79, 185, 214, 391
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 139, 345
Hpy188I TCNGA 4 cut(s) 28, 229, 300, 407
Hpy188III TCNNGA 4 cut(s) 20, 53, 112, 391
Hpy8I GTNNAC 2 cut(s) 139, 345
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 320, 345
HpyF3I CTNAG 2 cut(s) 404, 429
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 46, 208
Kpn2I TCCGGA 1 cut(s) 390
KspAI GTTAAC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 8 cut(s) 79, 92, 198, 227, 306, 333, 399, 404
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 5 cut(s) 28, 127, 130, 133, 337
MhlI GDGCHC 1 cut(s) 347
MlyI GAGTC 1 cut(s) 391
MnlI CCTC 4 cut(s) 22, 223, 253, 256
MroI TCCGGA 1 cut(s) 390
MseI TTAA 2 cut(s) 138, 366
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 4 cut(s) 79, 185, 214, 391
NcoI CCATGG 1 cut(s) 42
NdeII GATC 1 cut(s) 300
NlaIII CATG 2 cut(s) 46, 208
NlaIV GGNNCC 3 cut(s) 183, 226, 288
NmuCI GTSAC 1 cut(s) 83
NotI GCGGCCGC 1 cut(s) 359
NspI RCATGY 1 cut(s) 208
NspV TTCGAA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 3 cut(s) 23, 106, 400
PinAI ACCGGT 1 cut(s) 213
PkrI GCNGC 8 cut(s) 158, 224, 291, 294, 309, 312, 360, 363
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
PspN4I GGNNCC 3 cut(s) 183, 226, 288
SaqAI TTAA 2 cut(s) 138, 366
SatI GCNGC 8 cut(s) 157, 223, 290, 293, 308, 311, 359, 362
Sau3AI GATC 1 cut(s) 300
SchI GAGTC 1 cut(s) 391
SduI GDGCHC 1 cut(s) 347
SetI ASST 3 cut(s) 33, 68, 430
SfaNI GCATC 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 60
SsiI CCGC 7 cut(s) 222, 290, 293, 307, 310, 358, 362
SspI AATATT 1 cut(s) 169
StyI CCWWGG 1 cut(s) 42
TaqI TCGA 5 cut(s) 54, 60, 104, 113, 210
TauI GCSGC 7 cut(s) 225, 292, 295, 310, 313, 361, 364
TfiI GAWTC 3 cut(s) 23, 106, 400
Tru1I TTAA 2 cut(s) 138, 366
Tru9I TTAA 2 cut(s) 138, 366
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 258
VneI GTGCAC 1 cut(s) 343
XceI RCATGY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.