FvH4_3g06450

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011961
Physical Location & Seq
Forward (+)
3700883 .. 3706104
5222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06450.t1

Sequence Viewer

Length: 768 bp
ATGAATTCACGTACTTCATATGATGATAAGGTCGGCAGGGCTTTTTGGGTCGCATGCTACTATTCTAAGGCGGTCAACATTCTCCTCGACGGTGGCGCCGGTAGTGTTCTGGTATCTAACGACCGCATTGTGCACGGAGAAGTTCCAAACATGATCGCAGAAATCGTAGGTATGCAGGTCTCCCTTGATGGAGACTTTGTTATTTCTCACTTGAGTTTTAAAAGCTTTAGCCGTAGACGCATCGAATTGGAGCAAAACCTGAAAGCCAAGTTCGAGGGTGAGAGTTCCGTCCTCAATTATCTCTTCCAGACTCCAGAGTCTCAATCAGACACTTTCCGATCCCCGAGCTTCATTTGCGCGAGTTCTGTTGTTATGGCGATGACAGAAGAGTTTCAAGAAGCGGAGGTGATCTTCTCTGAGAGCGGAGAGTCCTGCTTGGATTTCCGGCAACAACAGCAACAAAGCGCCAAGAAGTCGTCGGTGACAAAGAAGAAGAAAATGGGGAACTCGGTGCCGGTGAGGATTCCGAATCAAATGTTCGACCTCCGTGGCGGCGGCGGCGGCGGTGTTGTTAATGACCTCGACGACGACGAGCGTTACTACAAGGACGAAGGCGAGATGGTGCCGCCGCATTTGATCGTACGGCGGCGCGTGGAAGGGAAGATGGAGTTTTCGATGTGCACCGGAAACGGAAGAACTCTCAAGGGGAGGGATTTGAGTCAAGTCCGGAATTCCATTCTGAGGATGACCGGGTTCTTGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

256

Amino Acids

28.5

Weight (kDa)

6.02

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 138 - 254 1.8e-27 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 3 cut(s) 95, 511, 622
AccBSI CCGCTC 1 cut(s) 423
AccI GTMKAC 1 cut(s) 235
AccII CGCG 2 cut(s) 359, 651
AccIII TCCGGA 1 cut(s) 726
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 2 cut(s) 4, 730
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 13, 642
AfiI CCNNNNNNNGG 1 cut(s) 741
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 3 cut(s) 225, 348, 764
AluI AGCT 3 cut(s) 225, 348, 764
Alw21I GWGCWC 2 cut(s) 135, 683
Alw26I GTCTC 3 cut(s) 184, 186, 324
Alw44I GTGCAC 2 cut(s) 131, 679
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 726
ApaLI GTGCAC 2 cut(s) 131, 679
ApoI RAATTY 2 cut(s) 4, 730
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 4 cut(s) 98, 359, 467, 651
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 4 cut(s) 290, 418, 493, 529
AvaI CYCGRG 1 cut(s) 343
BaeGI GKGCMC 2 cut(s) 135, 683
BanI GGYRCC 3 cut(s) 95, 511, 622
Bbv12I GWGCWC 2 cut(s) 135, 683
BccI CCATC 3 cut(s) 182, 613, 658
BceAI ACGGC 2 cut(s) 216, 659
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 3 cut(s) 184, 186, 324
BfoI RGCGCY 2 cut(s) 99, 468
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 7 cut(s) 553, 556, 559, 562, 626, 629, 647
BlsI GCNGC 7 cut(s) 554, 557, 560, 563, 627, 630, 648
Bme1390I CCNGG 1 cut(s) 751
BmeT110I CYCGRG 1 cut(s) 343
BmiI GGNNCC 3 cut(s) 97, 513, 624
BmrFI CCNGG 1 cut(s) 751
BmsI GCATC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 232, 686
BpuMI CCSGG 1 cut(s) 751
BsaAI YACGTR 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 547
BsaWI WCCGGW 2 cut(s) 683, 726
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 741
Bse118I RCCGGY 2 cut(s) 98, 514
BseAI TCCGGA 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 1 cut(s) 750
BseLI CCNNNNNNNGG 1 cut(s) 741
BseMII CTCAG 2 cut(s) 408, 731
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 2 cut(s) 135, 683
Bsh1236I CGCG 2 cut(s) 359, 651
Bsh1285I CGRYCG 1 cut(s) 124
BshNI GGYRCC 3 cut(s) 95, 511, 622
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 135, 683
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 6 cut(s) 99, 445, 515, 684, 727, 750
BsiWI CGTACG 1 cut(s) 640
BslI CCNNNNNNNGG 1 cut(s) 741
BsmAI GTCTC 3 cut(s) 184, 186, 324
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 135, 683
Bsp13I TCCGGA 1 cut(s) 726
Bsp143I GATC 4 cut(s) 153, 338, 408, 636
BspCNI CTCAG 2 cut(s) 409, 732
BspEI TCCGGA 1 cut(s) 726
BspFNI CGCG 2 cut(s) 359, 651
BspLI GGNNCC 3 cut(s) 97, 513, 624
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 3 cut(s) 95, 511, 622
BspTNI GGTCTC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 423
BsrFI RCCGGY 2 cut(s) 98, 514
BssAI RCCGGY 2 cut(s) 98, 514
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 153, 338, 408, 636
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 308, 381
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 66, 417, 740
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 1 cut(s) 750
BstFNI CGCG 2 cut(s) 359, 651
BstH2I RGCGCY 2 cut(s) 99, 468
BstHHI GCGC 4 cut(s) 98, 359, 467, 651
BstKTI GATC 4 cut(s) 156, 341, 411, 639
BstMAI GTCTC 3 cut(s) 184, 186, 324
BstMBI GATC 4 cut(s) 153, 338, 408, 636
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 237, 354, 454, 558, 561
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 749
BstSLI GKGCMC 2 cut(s) 135, 683
BstUI CGCG 2 cut(s) 359, 651
BtgI CCRYGG 1 cut(s) 547
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 1 cut(s) 750
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 4 cut(s) 98, 359, 467, 651
Cfr10I RCCGGY 2 cut(s) 98, 514
CseI GACGC 1 cut(s) 246
Csp6I GTAC 2 cut(s) 12, 641
CviAII CATG 2 cut(s) 54, 151
CviJI RGCY 6 cut(s) 41, 225, 231, 266, 348, 764
CviKI_1 RGCY 6 cut(s) 41, 225, 231, 266, 348, 764
CviQI GTAC 2 cut(s) 12, 641
DdeI CTNAG 3 cut(s) 66, 417, 740
DinI GGCGCC 1 cut(s) 97
DpnI GATC 4 cut(s) 155, 340, 410, 638
DpnII GATC 4 cut(s) 153, 338, 408, 636
DraI TTTAAA 1 cut(s) 220
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 308, 381
EarI CTCTTC 2 cut(s) 308, 381
Eco31I GGTCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 343
EcoRI GAATTC 2 cut(s) 4, 730
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
FaeI CATG 2 cut(s) 57, 154
FaiI YATR 6 cut(s) 19, 21, 55, 152, 173, 374
FatI CATG 2 cut(s) 53, 150
FauNDI CATATG 1 cut(s) 19
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 7 cut(s) 553, 556, 559, 562, 626, 629, 647
FokI GGATG 1 cut(s) 757
Fsp4HI GCNGC 7 cut(s) 553, 556, 559, 562, 626, 629, 647
GlaI GCGC 4 cut(s) 97, 358, 466, 650
GluI GCNGC 7 cut(s) 553, 556, 559, 562, 626, 629, 647
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 2 cut(s) 99, 468
HapII CCGG 6 cut(s) 99, 445, 515, 684, 727, 750
HgaI GACGC 1 cut(s) 246
HhaI GCGC 4 cut(s) 98, 359, 467, 651
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 57, 154
Hin6I GCGC 4 cut(s) 96, 357, 465, 649
HinP1I GCGC 4 cut(s) 96, 357, 465, 649
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 223, 762
HinfI GANTC 6 cut(s) 310, 317, 428, 523, 529, 718
HpaII CCGG 6 cut(s) 99, 445, 515, 684, 727, 750
HphI GGTGA 4 cut(s) 290, 418, 493, 529
Hpy166II GTNNAC 4 cut(s) 76, 133, 236, 681
Hpy188I TCNGA 5 cut(s) 328, 338, 418, 528, 741
Hpy188III TCNNGA 4 cut(s) 307, 314, 395, 727
Hpy8I GTNNAC 4 cut(s) 76, 133, 236, 681
Hpy99I CGWCG 5 cut(s) 92, 481, 587, 590, 593
HpyAV CCTTC 2 cut(s) 605, 650
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 133, 175, 681
HpyF10VI GCNNNNNNNGC 5 cut(s) 237, 354, 454, 558, 561
HpyF3I CTNAG 3 cut(s) 66, 417, 740
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 57, 154
HspAI GCGC 4 cut(s) 96, 357, 465, 649
KasI GGCGCC 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 726
Kzo9I GATC 4 cut(s) 153, 338, 408, 636
LmnI GCTCC 1 cut(s) 250
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 481, 596
MalI GATC 4 cut(s) 155, 340, 410, 638
MbiI CCGCTC 1 cut(s) 423
MboI GATC 4 cut(s) 153, 338, 408, 636
MboII GAAGA 7 cut(s) 295, 398, 403, 502, 505, 673, 705
MhlI GDGCHC 2 cut(s) 135, 683
MluCI AATT 4 cut(s) 4, 245, 295, 730
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 4 cut(s) 304, 326, 437, 727
MnlI CCTC 9 cut(s) 95, 268, 302, 397, 513, 554, 590, 702, 735
MroI TCCGGA 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 219, 573
MspI CCGG 6 cut(s) 99, 445, 515, 684, 727, 750
MspR9I CCNGG 1 cut(s) 751
MvnI CGCG 2 cut(s) 359, 651
MwoI GCNNNNNNNGC 5 cut(s) 237, 354, 454, 558, 561
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 1 cut(s) 751
NdeI CATATG 1 cut(s) 19
NdeII GATC 4 cut(s) 153, 338, 408, 636
NlaIII CATG 2 cut(s) 57, 154
NlaIV GGNNCC 3 cut(s) 97, 513, 624
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 57
PaeI GCATGC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 588
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 523, 529
Pfl23II CGTACG 1 cut(s) 640
PkrI GCNGC 7 cut(s) 554, 557, 560, 563, 627, 630, 648
PleI GAGTC 4 cut(s) 304, 325, 436, 726
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 4 cut(s) 304, 325, 436, 726
Ppu21I YACGTR 1 cut(s) 11
PspLI CGTACG 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 97, 513, 624
RsaI GTAC 2 cut(s) 13, 642
RsaNI GTAC 2 cut(s) 12, 641
SaqAI TTAA 2 cut(s) 219, 573
SatI GCNGC 7 cut(s) 553, 556, 559, 562, 626, 629, 647
Sau3AI GATC 4 cut(s) 153, 338, 408, 636
SchI GAGTC 4 cut(s) 304, 326, 437, 727
ScrFI CCNGG 1 cut(s) 751
SduI GDGCHC 2 cut(s) 135, 683
SfaNI GCATC 1 cut(s) 249
SfoI GGCGCC 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 211, 701
SmoI CTYRAG 2 cut(s) 211, 701
SphI GCATGC 1 cut(s) 57
Sse9I AATT 4 cut(s) 4, 245, 295, 730
SspDI GGCGCC 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 749
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 13
TaqI TCGA 6 cut(s) 87, 243, 273, 540, 582, 674
TasI AATT 4 cut(s) 4, 245, 295, 730
TauI GCSGC 7 cut(s) 555, 558, 561, 564, 628, 631, 649
TfiI GAWTC 2 cut(s) 523, 529
Tru1I TTAA 2 cut(s) 219, 573
Tru9I TTAA 2 cut(s) 219, 573
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 6, 17, 340
TspGWI ACGGA 4 cut(s) 150, 277, 536, 705
VneI GTGCAC 2 cut(s) 131, 679
XapI RAATTY 2 cut(s) 4, 730
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.