MD00G1093200.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0011961
Physical Location & Seq
Reverse (-)
19600410 .. 19600838
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1093200.v1.1.491

Sequence Viewer

Length: 429 bp
ATGAATCTAGCCATGGCCGACTACGAGTTTCAAGAATCTGAGGTCATCTTCTCCATGGATAATCTCGACTTCGAGACCTGCTTGGATTTCCGGCGTCACCATCAAAACGACAAGTCGAATGTCTCGAAGAAGAAGAAAATGGGGAAGATTAACAACACCGACGGCAACAATAATATTATCAAGTCTGTGCCGGTGAAAATCCCCAACAACATGTTCAGCGGCTCCGAGGACGACAGCGACGGAGACTACTACAAGGAGGAGGAGTGGGACGGGGGAGAAATGGTGCCGCCGCATCTGATTGTGCGCCGGCGTATTGCCGGGAAGATGGCGTTCTCCGTGTGCACAGGCAACGGGCGGACGCTTAAAGGAAGGGATTTGAGTCGAGTCCGGAATTCGATTCTCAGAATGACTGGTTTCTTGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

143

Amino Acids

16.21

Weight (kDa)

6.3

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 141 2.2e-28 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 283
AccIII TCCGGA 1 cut(s) 387
AciI CCGC 4 cut(s) 219, 287, 290, 355
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 3 cut(s) 68, 127, 237
Alw44I GTGCAC 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 387
AoxI GGCC 1 cut(s) 15
ApaLI GTGCAC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 89, 205
BaeGI GKGCMC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 344
BccI CCATC 2 cut(s) 108, 319
BceAI ACGGC 1 cut(s) 178
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 68, 127, 237
BfaI CTAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 3 cut(s) 220, 287, 290
BlsI GCNGC 3 cut(s) 221, 288, 291
Bme1390I CCNGG 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 223, 285
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 12, 54, 225
BsaWI WCCGGW 1 cut(s) 387
BsaXI ACNNNNNCTCC 4 cut(s) 248, 267, 278, 297
Bse118I RCCGGY 2 cut(s) 190, 306
Bse1I ACTGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 12, 54, 225
BseMII CTCAG 2 cut(s) 30, 415
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 2 cut(s) 272, 275
BseSI GKGCMC 1 cut(s) 344
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 5 cut(s) 91, 191, 307, 318, 388
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 68, 127, 237
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 387
Bsp19I CCATGG 2 cut(s) 12, 54
BspACI CCGC 4 cut(s) 219, 287, 290, 355
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 2 cut(s) 31, 414
BspEI TCCGGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 223, 285
BspMI ACCTGC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 68
BsrFI RCCGGY 2 cut(s) 190, 306
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 2 cut(s) 190, 306
BssECI CCNNGG 3 cut(s) 12, 54, 225
BssNI GRCGYC 1 cut(s) 94
BssT1I CCWWGG 2 cut(s) 12, 54
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 39, 401, 426
BstDSI CCRYGG 2 cut(s) 12, 54
BstHHI GCGC 1 cut(s) 306
BstMAI GTCTC 3 cut(s) 68, 127, 237
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 344
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 2 cut(s) 12, 54
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 306
Cfr10I RCCGGY 2 cut(s) 190, 306
CseI GACGC 2 cut(s) 83, 367
CviAII CATG 3 cut(s) 13, 55, 211
CviJI RGCY 4 cut(s) 11, 17, 222, 425
CviKI_1 RGCY 4 cut(s) 11, 17, 222, 425
DdeI CTNAG 3 cut(s) 39, 401, 426
EaeI YGGCCR 1 cut(s) 15
EciI GGCGGA 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 12, 54
Eco31I GGTCTC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 12, 54
ErhI CCWWGG 2 cut(s) 12, 54
FaeI CATG 3 cut(s) 16, 58, 214
FaiI YATR 3 cut(s) 14, 56, 212
FaqI GGGAC 1 cut(s) 281
FatI CATG 3 cut(s) 12, 54, 210
Fnu4HI GCNGC 3 cut(s) 220, 287, 290
Fsp4HI GCNGC 3 cut(s) 220, 287, 290
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 305
GluI GCNGC 3 cut(s) 220, 287, 290
HaeIII GGCC 1 cut(s) 17
HapII CCGG 5 cut(s) 91, 191, 307, 318, 388
HgaI GACGC 2 cut(s) 83, 367
HhaI GCGC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 3 cut(s) 16, 58, 214
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 5 cut(s) 4, 35, 379, 384, 397
HpaII CCGG 5 cut(s) 91, 191, 307, 318, 388
HphI GGTGA 2 cut(s) 89, 205
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 4 cut(s) 40, 226, 297, 404
Hpy188III TCNNGA 5 cut(s) 32, 65, 73, 124, 388
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 2 cut(s) 164, 242
HpyAV CCTTC 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 342
HpyF3I CTNAG 3 cut(s) 39, 401, 426
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 3 cut(s) 16, 58, 214
HspAI GCGC 1 cut(s) 304
Kpn2I TCCGGA 1 cut(s) 387
KroI GCCGGC 1 cut(s) 306
KroNI GCCGGC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 8 cut(s) 91, 104, 204, 320, 330, 331, 396, 401
LweI GCATC 1 cut(s) 301
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 6 cut(s) 40, 139, 142, 145, 157, 334
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 1 cut(s) 391
MlyI GAGTC 2 cut(s) 388, 393
MnlI CCTC 4 cut(s) 34, 220, 250, 253
MreI CGCCGGCG 1 cut(s) 306
MroI TCCGGA 1 cut(s) 387
MroNI GCCGGC 1 cut(s) 306
MseI TTAA 2 cut(s) 150, 363
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 5 cut(s) 91, 191, 307, 318, 388
MspR9I CCNGG 1 cut(s) 319
NaeI GCCGGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 319
NcoI CCATGG 2 cut(s) 12, 54
NgoMIV GCCGGC 1 cut(s) 306
NlaIII CATG 3 cut(s) 16, 58, 214
NlaIV GGNNCC 2 cut(s) 223, 285
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 214
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 308
PfeI GAWTC 3 cut(s) 4, 35, 397
PkrI GCNGC 3 cut(s) 221, 288, 291
PleI GAGTC 2 cut(s) 387, 392
PpsI GAGTC 2 cut(s) 387, 392
PscI ACATGT 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 223, 285
SaqAI TTAA 2 cut(s) 150, 363
SatI GCNGC 3 cut(s) 220, 287, 290
SchI GAGTC 2 cut(s) 388, 393
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 344
SetI ASST 3 cut(s) 45, 80, 427
SfaNI GCATC 1 cut(s) 301
SgrAI CRCCGGYG 1 cut(s) 306
Sse9I AATT 1 cut(s) 391
SsiI CCGC 4 cut(s) 219, 287, 290, 355
SspI AATATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 2 cut(s) 12, 54
TaqI TCGA 6 cut(s) 66, 72, 116, 125, 382, 395
TasI AATT 1 cut(s) 391
TauI GCSGC 3 cut(s) 222, 289, 292
TfiI GAWTC 3 cut(s) 4, 35, 397
Tru1I TTAA 2 cut(s) 150, 363
Tru9I TTAA 2 cut(s) 150, 363
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 255, 325
VneI GTGCAC 1 cut(s) 340
XapI RAATTY 1 cut(s) 391
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.