Rh5CG107400

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011961
Physical Location & Seq
Reverse (-)
8873065 .. 8874521
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG107400.1

Sequence Viewer

Length: 384 bp
ATGACAGAAGAGTTTCAAGAAGCCGAGGTGATCTTCTCGGAGAACGGAGAGTCCTGCTTGGATTTCCGGCAACAACAGCAACAACACGCTAAGAAGTCGTCGGTGACAAAGAAGAAGAAGAAAACGGTGCCAGTGAGGATTCCGAATCATGTGTTCGACTTCCGCGGTGGGGGTGGTGGTGGTGTTCTTAATGACGTCGACGACGATGAGCGTTACTACAAGGACGAAGGAGAGATAGTGCCGCCGCATTTGATCATACGGCGGCGCGTGGAAGGGAAGATGGCGTTTTCAGTGTGCACCGGAAACGGAAGAACTCTGAAGGGGAGGGATTTGAGTCAAGTCCGGAATTCCATTCTCAGAATGACCGGGTTCTTGGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

127

Amino Acids

14.39

Weight (kDa)

8.6

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 23 - 126 2.3e-26 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 165, 267
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 5 cut(s) 163, 165, 242, 245, 262
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw21I GWGCWC 1 cut(s) 299
Alw44I GTGCAC 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 342
ApaLI GTGCAC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 40, 115
BaeGI GKGCMC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 299
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 275
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 367
BisI GCNGC 3 cut(s) 242, 245, 263
BlsI GCNGC 3 cut(s) 243, 246, 264
Bme1390I CCNGG 1 cut(s) 367
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 24, 163
BsaWI WCCGGW 2 cut(s) 299, 342
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 24, 163
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 299
Bsh1236I CGCG 2 cut(s) 165, 267
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 4 cut(s) 67, 300, 343, 366
BslI CCNNNNNNNGG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 299
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 30, 252
BspACI CCGC 5 cut(s) 163, 165, 242, 245, 262
BspCNI CTCAG 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 342
BspFNI CGCG 2 cut(s) 165, 267
BspLI GGNNCC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 24, 163
BssMI GATC 2 cut(s) 30, 252
BssNI GRCGYC 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 90, 356
BstDSI CCRYGG 1 cut(s) 163
BstFNI CGCG 2 cut(s) 165, 267
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 33, 255
BstMBI GATC 2 cut(s) 30, 252
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 365
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 2 cut(s) 165, 267
BtgI CCRYGG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 138, 297
CfoI GCGC 1 cut(s) 267
Cfr42I CCGCGG 1 cut(s) 166
CviAII CATG 1 cut(s) 149
CviJI RGCY 2 cut(s) 23, 380
CviKI_1 RGCY 2 cut(s) 23, 380
DdeI CTNAG 2 cut(s) 90, 356
DpnI GATC 2 cut(s) 32, 254
DpnII GATC 2 cut(s) 30, 252
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 346
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 150, 257
FatI CATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 242, 245, 263
Fsp4HI GCNGC 3 cut(s) 242, 245, 263
GlaI GCGC 1 cut(s) 266
GluI GCNGC 3 cut(s) 242, 245, 263
HapII CCGG 4 cut(s) 67, 300, 343, 366
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 4 cut(s) 50, 139, 145, 334
HpaII CCGG 4 cut(s) 67, 300, 343, 366
HphI GGTGA 2 cut(s) 40, 115
Hpy166II GTNNAC 2 cut(s) 199, 297
Hpy188I TCNGA 4 cut(s) 40, 144, 318, 359
Hpy188III TCNNGA 2 cut(s) 17, 343
Hpy8I GTNNAC 2 cut(s) 199, 297
Hpy99I CGWCG 4 cut(s) 103, 200, 203, 206
HpyAV CCTTC 3 cut(s) 221, 266, 313
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 90, 356
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 252
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 30, 252
LpnPI CCDG 6 cut(s) 67, 80, 144, 313, 356, 379
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 103, 212
MalI GATC 2 cut(s) 32, 254
MboI GATC 2 cut(s) 30, 252
MboII GAAGA 7 cut(s) 20, 25, 124, 127, 130, 289, 321
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 1 cut(s) 346
MlyI GAGTC 2 cut(s) 59, 343
MnlI CCTC 3 cut(s) 19, 129, 318
MroI TCCGGA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 189, 382
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 4 cut(s) 67, 300, 343, 366
MspR9I CCNGG 1 cut(s) 367
MvnI CGCG 2 cut(s) 165, 267
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 367
NdeII GATC 2 cut(s) 30, 252
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 139, 145
PkrI GCNGC 3 cut(s) 243, 246, 264
PleI GAGTC 2 cut(s) 58, 342
PpsI GAGTC 2 cut(s) 58, 342
PspN4I GGNNCC 1 cut(s) 129
SacII CCGCGG 1 cut(s) 166
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 189, 382
SatI GCNGC 3 cut(s) 242, 245, 263
Sau3AI GATC 2 cut(s) 30, 252
SchI GAGTC 2 cut(s) 59, 343
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 1 cut(s) 299
SetI ASST 3 cut(s) 30, 198, 382
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SgrDI CGTCGACG 1 cut(s) 197
Sse9I AATT 1 cut(s) 346
SsiI CCGC 5 cut(s) 163, 165, 242, 245, 262
StyD4I CCNGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 156, 198
TasI AATT 1 cut(s) 346
TauI GCSGC 3 cut(s) 244, 247, 265
TfiI GAWTC 2 cut(s) 139, 145
Tru1I TTAA 2 cut(s) 189, 382
Tru9I TTAA 2 cut(s) 189, 382
TscAI CASTG 2 cut(s) 138, 297
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspGWI ACGGA 2 cut(s) 60, 321
TspRI CASTG 2 cut(s) 138, 297
VneI GTGCAC 1 cut(s) 295
XapI RAATTY 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 12
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.