Prupe.4G072000_v2.0.a1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011961
Physical Location & Seq
Forward (+)
3523300 .. 3524401
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G072000.1

Sequence Viewer

Length: 429 bp
ATGGCTCTGGCTGTGGTCGACTACGAGTTCCAAGAATCGGAGGTCATCTTCTCCGACAATCACGAATTCGAAAGCTGCTGGGATTTCCGGCCTCATCTTCACCACCACAGCAAGTCCAATTTCACCAAGAAGAAGAAGGCAATGGGGAATAATATTAGTAATGATAATAGCAAGTCGGTGCCGGTGAAAATCCCAAACAACGCGTTCGACCGGTTCGGCAGCGCCGACGACGAAAGCGAAGGCGATAATTACAGGGAGGAGGAATGGGACGAGGGAGAAATGGTGCCGCCGCATGTGATAGTACGGCGTCGTATTGCGGGGAAGATGGAGTTCTCGGTGTGCACGGGGAACGGGCGGACGCTTAAAGGAAGGGATTTGAGTCAAGTCCGGAATTCGATTCTCAGAATGACCGGCTTCTTGGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

143

Amino Acids

16.29

Weight (kDa)

5.67

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 178, 283
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 203
AccIII TCCGGA 1 cut(s) 387
AciI CCGC 4 cut(s) 287, 290, 317, 355
AcsI RAATTY 2 cut(s) 65, 391
AcyI GRCGYC 1 cut(s) 307
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 201
AgeI ACCGGT 1 cut(s) 210
AluBI AGCT 2 cut(s) 75, 425
AluI AGCT 2 cut(s) 75, 425
Alw21I GWGCWC 1 cut(s) 344
Alw44I GTGCAC 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 387
AoxI GGCC 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 75, 219
ApoI RAATTY 2 cut(s) 65, 391
AsiGI ACCGGT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 92, 115, 196
AsuII TTCGAA 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 344
BanI GGYRCC 2 cut(s) 178, 283
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 62, 231
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 4 cut(s) 76, 220, 287, 290
BlsI GCNGC 4 cut(s) 77, 221, 288, 291
BmiI GGNNCC 2 cut(s) 180, 285
Bpu14I TTCGAA 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 307
BsaWI WCCGGW 2 cut(s) 210, 387
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 3 cut(s) 181, 210, 410
Bse3DI GCAATG 1 cut(s) 147
BseAI TCCGGA 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 2 cut(s) 62, 231
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 178, 283
BshTI ACCGGT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 5 cut(s) 88, 182, 211, 388, 411
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 387
BspACI CCGC 4 cut(s) 287, 290, 317, 355
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 414
BspEI TCCGGA 1 cut(s) 387
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 2 cut(s) 180, 285
BspT104I TTCGAA 1 cut(s) 69
BspT107I GGYRCC 2 cut(s) 178, 283
BsrDI GCAATG 1 cut(s) 147
BsrFI RCCGGY 3 cut(s) 181, 210, 410
BssAI RCCGGY 3 cut(s) 181, 210, 410
BssNI GRCGYC 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstMCI CGRYCG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 344
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 62, 231
BsuRI GGCC 1 cut(s) 91
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 3 cut(s) 181, 210, 410
CseI GACGC 2 cut(s) 296, 367
Csp6I GTAC 1 cut(s) 302
CspAI ACCGGT 1 cut(s) 210
CviAII CATG 1 cut(s) 293
CviJI RGCY 6 cut(s) 5, 11, 75, 91, 414, 425
CviKI_1 RGCY 6 cut(s) 5, 11, 75, 91, 414, 425
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 401
EciI GGCGGA 1 cut(s) 370
EcoRI GAATTC 2 cut(s) 65, 391
FaeI CATG 1 cut(s) 296
FaiI YATR 1 cut(s) 294
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 310
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 76, 220, 287, 290
Fsp4HI GCNGC 4 cut(s) 76, 220, 287, 290
GlaI GCGC 1 cut(s) 223
GluI GCNGC 4 cut(s) 76, 220, 287, 290
GsaI CCCAGC 1 cut(s) 82
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 91
HapII CCGG 5 cut(s) 88, 182, 211, 388, 411
HgaI GACGC 2 cut(s) 296, 367
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 307
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 35, 379, 397
HpaII CCGG 5 cut(s) 88, 182, 211, 388, 411
HphI GGTGA 3 cut(s) 92, 115, 196
Hpy166II GTNNAC 2 cut(s) 19, 342
Hpy188I TCNGA 3 cut(s) 40, 55, 404
Hpy188III TCNNGA 2 cut(s) 62, 388
Hpy8I GTNNAC 2 cut(s) 19, 342
Hpy99I CGWCG 3 cut(s) 230, 233, 312
HpyAV CCTTC 3 cut(s) 130, 233, 363
HpyCH4V TGCA 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 307
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 1 cut(s) 222
Kpn2I TCCGGA 1 cut(s) 387
LpnPI CCDG 7 cut(s) 64, 101, 195, 224, 238, 401, 424
Lsp1109I GCAGC 2 cut(s) 62, 231
MboII GAAGA 5 cut(s) 40, 89, 142, 145, 334
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 4 cut(s) 65, 118, 247, 391
MluI ACGCGT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 5 cut(s) 34, 102, 250, 253, 265
MroI TCCGGA 1 cut(s) 387
MseI TTAA 2 cut(s) 363, 427
MspI CCGG 5 cut(s) 88, 182, 211, 388, 411
MvnI CGCG 1 cut(s) 203
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 180, 285
NspI RCATGY 1 cut(s) 296
NspV TTCGAA 1 cut(s) 69
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 234
PfeI GAWTC 2 cut(s) 35, 397
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 4 cut(s) 77, 221, 288, 291
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 180, 285
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 363, 427
SatI GCNGC 4 cut(s) 76, 220, 287, 290
SchI GAGTC 1 cut(s) 388
SduI GDGCHC 1 cut(s) 344
SetI ASST 3 cut(s) 45, 77, 427
SfuI TTCGAA 1 cut(s) 69
Sse9I AATT 4 cut(s) 65, 118, 247, 391
SsiI CCGC 4 cut(s) 287, 290, 317, 355
SspI AATATT 1 cut(s) 154
TaqI TCGA 4 cut(s) 18, 69, 207, 395
TasI AATT 4 cut(s) 65, 118, 247, 391
TauI GCSGC 2 cut(s) 289, 292
TfiI GAWTC 2 cut(s) 35, 397
Tru1I TTAA 2 cut(s) 363, 427
Tru9I TTAA 2 cut(s) 363, 427
TseI GCWGC 2 cut(s) 75, 219
VneI GTGCAC 1 cut(s) 340
XapI RAATTY 2 cut(s) 65, 391
XceI RCATGY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.