AT5G45630

DUF584 domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011961
Physical Location & Seq
Reverse (-)
18505536 .. 18506382
847 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45630.1

Sequence Viewer

Length: 345 bp
ATGTCAGAAGAATTTCAAGAATCCGACATTATATTTTCCGACCAATCCAAAATATCAACTTCTAGCCGATATACTAAACTCTATAACTCAAGAAACGACGAGAAGAAGGGTACAAGACGGCATGAGACGGCGGAGAAAACATCTCCGGTGAGAATTCCGACGAATAATTTCCGATGTTTGGAATGGGACACGACGGAGGAGGAGGATGATAAGACTCCTCCACATGTAATAATCGAACGACGAATGAAAGAGCAAATTGCGTTTTCCGCTTGTACTTTAAAAGGAAGAGACTTGAGCCGTCACCGGAACTCCGTTCTTAGGATGACCGGTTTTTTAGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

114

Amino Acids

13.39

Weight (kDa)

6.84

Isoelectric Point (pI)

66.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 18 - 113 2.5e-15 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 131, 267
AcsI RAATTY 2 cut(s) 11, 153
AfaI GTAC 2 cut(s) 112, 274
AfiI CCNNNNNNNGG 2 cut(s) 178, 318
AflIII ACRYGT 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 326
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 119, 282
ApoI RAATTY 2 cut(s) 11, 153
AsiGI ACCGGT 1 cut(s) 326
Asp700I GAANNNNTTC 2 cut(s) 12, 167
AsuHPI GGTGA 2 cut(s) 160, 293
BceAI ACGGC 3 cut(s) 134, 144, 282
BcoDI GTCTC 2 cut(s) 119, 282
BfaI CTAG 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 73, 313
BsaWI WCCGGW 3 cut(s) 145, 303, 326
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 318
Bse118I RCCGGY 1 cut(s) 326
BseGI GGATG 2 cut(s) 211, 327
BseLI CCNNNNNNNGG 2 cut(s) 178, 318
BseRI GAGGAG 3 cut(s) 207, 212, 215
BshTI ACCGGT 1 cut(s) 326
BsiSI CCGG 3 cut(s) 146, 304, 327
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 178, 318
BsmAI GTCTC 2 cut(s) 119, 282
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 200
BspACI CCGC 2 cut(s) 131, 267
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 211, 327
BstMAI GTCTC 2 cut(s) 119, 282
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 227
BtsCI GGATG 2 cut(s) 211, 327
Cfr10I RCCGGY 1 cut(s) 326
Csp6I GTAC 2 cut(s) 111, 273
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 2 cut(s) 122, 224
CviJI RGCY 3 cut(s) 66, 297, 341
CviKI_1 RGCY 3 cut(s) 66, 297, 341
CviQI GTAC 2 cut(s) 111, 273
DdeI CTNAG 1 cut(s) 317
DraI TTTAAA 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 2 cut(s) 125, 227
FaiI YATR 5 cut(s) 32, 72, 84, 123, 225
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 121, 223
FokI GGATG 2 cut(s) 218, 334
FspBI CTAG 1 cut(s) 63
HapII CCGG 3 cut(s) 146, 304, 327
Hin1II CATG 2 cut(s) 125, 227
HindIII AAGCTT 1 cut(s) 339
HinfI GANTC 2 cut(s) 20, 214
HpaII CCGG 3 cut(s) 146, 304, 327
HphI GGTGA 2 cut(s) 160, 293
Hpy188I TCNGA 5 cut(s) 7, 25, 40, 159, 173
Hpy188III TCNNGA 2 cut(s) 17, 90
Hpy99I CGWCG 4 cut(s) 101, 163, 196, 243
HpyAV CCTTC 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 2 cut(s) 125, 227
LpnPI CCDG 3 cut(s) 159, 317, 340
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 299
MboII GAAGA 3 cut(s) 20, 115, 297
MluCI AATT 4 cut(s) 11, 153, 166, 255
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 3 cut(s) 48, 63, 182
MnlI CCTC 4 cut(s) 190, 193, 196, 228
MroXI GAANNNNTTC 2 cut(s) 12, 167
MseI TTAA 2 cut(s) 278, 343
MspI CCGG 3 cut(s) 146, 304, 327
MwoI GCNNNNNNNGC 1 cut(s) 266
NlaIII CATG 2 cut(s) 125, 227
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 227
PciI ACATGT 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 12, 167
PfeI GAWTC 1 cut(s) 20
PinAI ACCGGT 1 cut(s) 326
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 223
RsaI GTAC 2 cut(s) 112, 274
RsaNI GTAC 2 cut(s) 111, 273
SaqAI TTAA 2 cut(s) 278, 343
SchI GAGTC 1 cut(s) 208
SetI ASST 1 cut(s) 343
SmlI CTYRAG 2 cut(s) 88, 292
SmoI CTYRAG 2 cut(s) 88, 292
Sse9I AATT 4 cut(s) 11, 153, 166, 255
SsiI CCGC 2 cut(s) 131, 267
SspMI CTAG 1 cut(s) 63
TaqI TCGA 1 cut(s) 234
TasI AATT 4 cut(s) 11, 153, 166, 255
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 278, 343
Tru9I TTAA 2 cut(s) 278, 343
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 2 cut(s) 209, 301
XapI RAATTY 2 cut(s) 11, 153
XceI RCATGY 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 12, 167
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.