Rorug05G0004600

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011961
Physical Location & Seq
Reverse (-)
301633 .. 303498
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0004600.1

Sequence Viewer

Length: 705 bp
ATGGAAAATTGGAGAGTGACAAGTCTGGTAGAGTTTCTTGGGAGGGAATGGAACTTCATTGATGTATTGACTTTGATAACAGTTATATTTTTACACTGCCTTGCTCTTTTGGCCCCATTTCAGTTCACCTGGGGTGCATTTTGGCCGTCTCTGGCACTCTATTTTCTTTTAAGTCTAGGTATAACTCTAGGTTACCATAGGAATCTTGCTCACCGGAGTTTAAAGCTTCCAAAATGGCTTGAATACTTTTTCGCCTATTGCGGTGTTCTCACACTTCAGGGAAGTCCGGTTGACTGGGTTAGCACACACAGGTACCATCACCAGTTTACAGATACAAAGAAAGACCCTCATAGCCCCATTATGGGACTGTGGTTTAGTCATATTGGCTGGATCTTCAATTACCGTTTAAGGTTTGAAAGCGTACGGTGTGAGGACAGTAGTTGGTTACCACGTGACTTTTTCTGTAAACTCGGTTTGTCACACATATGGGGAAAGCGAGTATGGGATACCGGTGATTTGTCTAGAAACAACTGGTTGTTGGCATTGCCTACACTTGGAGAAGGGTGGCACAATAACCACCACGCCTTTGATTACTCAGCTCGACAGGGCCTCGAATGGTGGCAGATTGATTTGACAAGGTATTTGATCAGATTTCTTCAAGTTGCTGGTTTGGCAACCGATGTGAAAACCCCAACTGAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

234

Amino Acids

27.66

Weight (kDa)

7.79

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 43 - 134 5e-08 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 312
AciI CCGC 1 cut(s) 261
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 260
AcvI CACGTG 1 cut(s) 452
AfaI GTAC 2 cut(s) 314, 423
AfiI CCNNNNNNNGG 3 cut(s) 361, 362, 554
AgeI ACCGGT 1 cut(s) 509
AgsI TTSAA 4 cut(s) 242, 397, 416, 659
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 226, 599
AluI AGCT 2 cut(s) 226, 599
Alw26I GTCTC 2 cut(s) 153, 692
AlwI GGATC 1 cut(s) 398
AoxI GGCC 3 cut(s) 111, 143, 607
ArsI GACNNNNNNTTYG 2 cut(s) 625, 657
AsiGI ACCGGT 1 cut(s) 509
Asp718I GGTACC 1 cut(s) 312
AspS9I GGNCC 2 cut(s) 112, 607
AsuHPI GGTGA 4 cut(s) 118, 203, 311, 524
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BanI GGYRCC 1 cut(s) 312
BbrPI CACGTG 1 cut(s) 452
BccI CCATC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 130
BciVI GTATCC 1 cut(s) 499
BclI TGATCA 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 153, 692
BfaI CTAG 4 cut(s) 176, 188, 522, 703
BfuI GTATCC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 112, 607
BmiI GGNNCC 2 cut(s) 114, 314
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 3 cut(s) 213, 286, 509
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 362, 554
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 3 cut(s) 299, 322, 536
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 361, 362, 554
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 609, 687
BseNI ACTGG 3 cut(s) 299, 322, 536
BshFI GGCC 3 cut(s) 113, 145, 609
BshNI GGYRCC 1 cut(s) 312
BshTI ACCGGT 1 cut(s) 509
BsiSI CCGG 3 cut(s) 214, 287, 510
BsiWI CGTACG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 3 cut(s) 361, 362, 554
BsmAI GTCTC 2 cut(s) 153, 692
BsmBI CGTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 3 cut(s) 113, 145, 609
Bso31I GGTCTC 1 cut(s) 692
Bsp143I GATC 2 cut(s) 390, 645
BspACI CCGC 1 cut(s) 261
BspANI GGCC 3 cut(s) 113, 145, 609
BspCNI CTCAG 2 cut(s) 608, 688
BspLI GGNNCC 2 cut(s) 114, 314
BspPI GGATC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 542
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 3 cut(s) 299, 322, 536
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 390, 645
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 5 cut(s) 82, 369, 404, 426, 437
BstBAI YACGTR 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 595, 696
BstEII GGTNACC 2 cut(s) 191, 444
BstKTI GATC 2 cut(s) 393, 648
BstMAI GTCTC 2 cut(s) 153, 692
BstMBI GATC 2 cut(s) 390, 645
BstMWI GCNNNNNNNGC 2 cut(s) 110, 671
BstNI CCWGG 1 cut(s) 130
BstPI GGTNACC 2 cut(s) 191, 444
BstSCI CCNGG 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 3 cut(s) 113, 145, 609
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 112, 607
Csp6I GTAC 2 cut(s) 313, 422
CspAI ACCGGT 1 cut(s) 509
CviJI RGCY 8 cut(s) 113, 145, 226, 238, 354, 387, 599, 609
CviKI_1 RGCY 8 cut(s) 113, 145, 226, 238, 354, 387, 599, 609
CviQI GTAC 2 cut(s) 313, 422
DdeI CTNAG 2 cut(s) 595, 696
DpnI GATC 2 cut(s) 392, 647
DpnII GATC 2 cut(s) 390, 645
DraI TTTAAA 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 260
Eco72I CACGTG 1 cut(s) 452
Eco91I GGTNACC 2 cut(s) 191, 444
EcoO109I RGGNCCY 1 cut(s) 607
EcoO65I GGTNACC 2 cut(s) 191, 444
EcoRII CCWGG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 153
FaiI YATR 9 cut(s) 86, 182, 198, 351, 362, 381, 485, 487, 502
FaqI GGGAC 1 cut(s) 378
FauNDI CATATG 1 cut(s) 485
FbaI TGATCA 1 cut(s) 645
FspBI CTAG 4 cut(s) 176, 188, 522, 703
HaeIII GGCC 3 cut(s) 113, 145, 609
HapII CCGG 3 cut(s) 214, 287, 510
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 202
HpaII CCGG 3 cut(s) 214, 287, 510
HphI GGTGA 4 cut(s) 118, 203, 311, 524
Hpy166II GTNNAC 4 cut(s) 126, 292, 327, 467
Hpy188I TCNGA 1 cut(s) 650
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 4 cut(s) 126, 292, 327, 467
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 5 cut(s) 82, 369, 404, 426, 437
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 671
HpyF3I CTNAG 2 cut(s) 595, 696
HpySE526I ACGT 1 cut(s) 451
KpnI GGTACC 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 2 cut(s) 390, 645
MaeI CTAG 4 cut(s) 176, 188, 522, 703
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 5 cut(s) 16, 191, 444, 452, 477
MalI GATC 2 cut(s) 392, 647
MboI GATC 2 cut(s) 390, 645
MboII GAAGA 2 cut(s) 385, 647
MflI RGATCY 1 cut(s) 390
MluCI AATT 2 cut(s) 7, 397
MnlI CCTC 4 cut(s) 36, 357, 424, 620
MseI TTAA 3 cut(s) 170, 221, 407
MslI CAYNNNNRTG 1 cut(s) 484
MspI CCGG 3 cut(s) 214, 287, 510
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 110, 671
NdeI CATATG 1 cut(s) 485
NdeII GATC 2 cut(s) 390, 645
NlaIV GGNNCC 2 cut(s) 114, 314
NmuCI GTSAC 3 cut(s) 16, 452, 477
PfeI GAWTC 1 cut(s) 202
Pfl23II CGTACG 1 cut(s) 421
PinAI ACCGGT 1 cut(s) 509
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 128
PspCI CACGTG 1 cut(s) 452
PspEI GGTNACC 2 cut(s) 191, 444
PspGI CCWGG 1 cut(s) 128
PspLI CGTACG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 114, 314
PspPI GGNCC 2 cut(s) 112, 607
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 2 cut(s) 314, 423
RsaNI GTAC 2 cut(s) 313, 422
RseI CAYNNNNRTG 1 cut(s) 484
SaqAI TTAA 3 cut(s) 170, 221, 407
Sau3AI GATC 2 cut(s) 390, 645
Sau96I GGNCC 2 cut(s) 112, 607
ScrFI CCNGG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 484
Sse9I AATT 2 cut(s) 7, 397
SsiI CCGC 1 cut(s) 261
SspMI CTAG 4 cut(s) 176, 188, 522, 703
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 5 cut(s) 82, 369, 404, 426, 437
TaiI ACGT 1 cut(s) 454
TaqI TCGA 2 cut(s) 601, 612
TasI AATT 2 cut(s) 7, 397
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 3 cut(s) 170, 221, 407
Tru9I TTAA 3 cut(s) 170, 221, 407
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 3 cut(s) 16, 452, 477
Tsp45I GTSAC 3 cut(s) 16, 452, 477
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 521
XspI CTAG 4 cut(s) 176, 188, 522, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.