Rh5DG094100

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011961
Physical Location & Seq
Reverse (-)
8633580 .. 8635040
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG094100.1

Sequence Viewer

Length: 387 bp
ATGACAGAAGAGTTTCAAGAAGCCGAGGTGATCTTCTCGGAGAACGGAGAGTCCTGCTTGGATTTCCGGCAACAACAGCAACAACACGCTAAGAAGTCGTCGGTGACAAAGAAGAAGAAGAAAACGGTGCCAGTGAGGATTCCGAATCATGTGTTCGACTTCCGCGGTGGTGGTGGTGGTGGTGGTGTTCTTAATGACTTCGACGACGATGAGCGTTACTACAAGGACGAAGGCGAGATAGTGCCGCCGCATTTGATCATACGGCGGCGCGTGGAAGGGAAGATGGCGTTTTCAGTGTGCACCGGAAACGGAAGAACTCTGAAGGGGAGGGATTTGAGTCAAGTCAGGAATTCCATTCTCAGAATGACCGGGTTCTTGGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

128

Amino Acids

14.49

Weight (kDa)

8.6

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 23 - 127 4.7e-26 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccII CGCG 2 cut(s) 165, 270
AciI CCGC 5 cut(s) 163, 165, 245, 248, 265
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 341
AgsI TTSAA 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 1 cut(s) 302
Alw44I GTGCAC 1 cut(s) 298
ApaLI GTGCAC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 349
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 40, 115
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 302
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 278
BclI TGATCA 1 cut(s) 255
BcnI CCSGG 1 cut(s) 370
BisI GCNGC 3 cut(s) 245, 248, 266
BlsI GCNGC 3 cut(s) 246, 249, 267
Bme1390I CCNGG 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 24, 163
BsaWI WCCGGW 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 131
BseDI CCNNGG 2 cut(s) 24, 163
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 302
Bsh1236I CGCG 2 cut(s) 165, 270
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 3 cut(s) 67, 303, 369
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 30, 255
BspACI CCGC 5 cut(s) 163, 165, 245, 248, 265
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 2 cut(s) 165, 270
BspLI GGNNCC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 24, 163
BssMI GATC 2 cut(s) 30, 255
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 90, 359
BstDSI CCRYGG 1 cut(s) 163
BstFNI CGCG 2 cut(s) 165, 270
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 33, 258
BstMBI GATC 2 cut(s) 30, 255
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 368
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 2 cut(s) 165, 270
BtgI CCRYGG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 138, 300
CfoI GCGC 1 cut(s) 270
Cfr42I CCGCGG 1 cut(s) 166
CviAII CATG 1 cut(s) 149
CviJI RGCY 2 cut(s) 23, 383
CviKI_1 RGCY 2 cut(s) 23, 383
DdeI CTNAG 2 cut(s) 90, 359
DpnI GATC 2 cut(s) 32, 257
DpnII GATC 2 cut(s) 30, 255
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 349
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 150, 260
FatI CATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 245, 248, 266
Fsp4HI GCNGC 3 cut(s) 245, 248, 266
GlaI GCGC 1 cut(s) 269
GluI GCNGC 3 cut(s) 245, 248, 266
HapII CCGG 3 cut(s) 67, 303, 369
HhaI GCGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 4 cut(s) 50, 139, 145, 337
HpaII CCGG 3 cut(s) 67, 303, 369
HphI GGTGA 2 cut(s) 40, 115
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 4 cut(s) 40, 144, 321, 362
Hpy188III TCNNGA 2 cut(s) 17, 346
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 3 cut(s) 103, 206, 209
HpyAV CCTTC 3 cut(s) 224, 269, 316
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 90, 359
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 255
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 30, 255
LpnPI CCDG 6 cut(s) 67, 80, 144, 316, 331, 382
MaeIII GTNAC 2 cut(s) 103, 215
MalI GATC 2 cut(s) 32, 257
MboI GATC 2 cut(s) 30, 255
MboII GAAGA 7 cut(s) 20, 25, 124, 127, 130, 292, 324
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 1 cut(s) 349
MlyI GAGTC 2 cut(s) 59, 346
MnlI CCTC 3 cut(s) 19, 129, 321
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 192, 385
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 3 cut(s) 67, 303, 369
MspR9I CCNGG 1 cut(s) 370
MvnI CGCG 2 cut(s) 165, 270
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 370
NdeII GATC 2 cut(s) 30, 255
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 139, 145
PkrI GCNGC 3 cut(s) 246, 249, 267
PleI GAGTC 2 cut(s) 58, 345
PpsI GAGTC 2 cut(s) 58, 345
PspN4I GGNNCC 1 cut(s) 129
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 2 cut(s) 192, 385
SatI GCNGC 3 cut(s) 245, 248, 266
Sau3AI GATC 2 cut(s) 30, 255
SchI GAGTC 2 cut(s) 59, 346
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 1 cut(s) 302
SetI ASST 2 cut(s) 30, 385
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
Sse9I AATT 1 cut(s) 349
SsiI CCGC 5 cut(s) 163, 165, 245, 248, 265
StyD4I CCNGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 156, 201
TasI AATT 1 cut(s) 349
TauI GCSGC 3 cut(s) 247, 250, 268
TfiI GAWTC 2 cut(s) 139, 145
Tru1I TTAA 2 cut(s) 192, 385
Tru9I TTAA 2 cut(s) 192, 385
TscAI CASTG 2 cut(s) 138, 300
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspGWI ACGGA 2 cut(s) 60, 324
TspRI CASTG 2 cut(s) 138, 300
VneI GTGCAC 1 cut(s) 298
XapI RAATTY 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.