AT2G34340

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011961
Physical Location & Seq
Reverse (-)
14488584 .. 14489767
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34340.1

Sequence Viewer

Length: 411 bp
ATGGCGGAGGAATTCGATGAATCTGAGGTAGTGTTCTCCGATGGTTTAAGCTCCGTTCTCCATAAAGAGAACGAGAATCGCCTGTTTGGTTCTGATATGGAGAGGAAGAAGACGAGGCGGATCAAGAGGACGACGACGGAGAAGGCGTCGTTGTCGAGCTCGCTTCCGGTGAGTATCCCTGAGAACATCTTTCGGAGGTACGTTGGGAAAGAGGAGGATGAATACTCAGAGGAGGAATATTCCGAAGGAGGAGGAGAGATGATTCCGCCGCATATTATGATCGGACGGAGGATCCAAGGAGGACAAATGGCGTTTTCCGTTTGTTCAGGTAGTGGAAGGACTCTTAAGGGAAGAGATCTGAGCCGGGTTCGGAATTCGGTTCTTAGGTTAACCGGTTTTTTGGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

5.8

Isoelectric Point (pI)

64.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 27 - 135 2.9e-28 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 118, 266, 269
AclWI GGATC 3 cut(s) 128, 286, 299
AcsI RAATTY 2 cut(s) 11, 373
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 200
AflII CTTAAG 1 cut(s) 344
AgeI ACCGGT 1 cut(s) 392
AluBI AGCT 2 cut(s) 51, 159
AluI AGCT 2 cut(s) 51, 159
Alw21I GWGCWC 1 cut(s) 161
AlwI GGATC 3 cut(s) 128, 286, 299
ApoI RAATTY 2 cut(s) 11, 373
AsiGI ACCGGT 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 161
BccI CCATC 1 cut(s) 35
BciVI GTATCC 1 cut(s) 185
BcnI CCSGG 1 cut(s) 365
BfrI CTTAAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 185
BglII AGATCT 1 cut(s) 355
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 2 cut(s) 166, 392
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bse118I RCCGGY 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 223
BseMII CTCAG 4 cut(s) 15, 171, 240, 350
BseRI GAGGAG 4 cut(s) 227, 245, 264, 267
BshTI ACCGGT 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 3 cut(s) 167, 364, 393
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 120, 279, 291, 355
BspACI CCGC 4 cut(s) 5, 118, 266, 269
BspCNI CTCAG 4 cut(s) 16, 172, 239, 351
BspLI GGNNCC 1 cut(s) 293
BspPI GGATC 3 cut(s) 128, 286, 299
BspTI CTTAAG 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 4 cut(s) 120, 279, 291, 355
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 5 cut(s) 24, 180, 226, 359, 383
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 4 cut(s) 123, 282, 294, 358
BstMBI GATC 4 cut(s) 120, 279, 291, 355
BstSCI CCNGG 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 2 cut(s) 291, 355
BstYI RGATCY 2 cut(s) 291, 355
BsuI GTATCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 392
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 199
CspAI ACCGGT 1 cut(s) 392
CviJI RGCY 4 cut(s) 51, 159, 363, 407
CviKI_1 RGCY 4 cut(s) 51, 159, 363, 407
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 5 cut(s) 24, 180, 226, 359, 383
DpnI GATC 4 cut(s) 122, 281, 293, 357
DpnII GATC 4 cut(s) 120, 279, 291, 355
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 3 cut(s) 20, 133, 255
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 159
EcoRI GAATTC 2 cut(s) 11, 373
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 295
FaiI YATR 4 cut(s) 63, 98, 273, 278
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 269
HapII CCGG 3 cut(s) 167, 364, 393
HgaI GACGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 4 cut(s) 20, 76, 262, 340
HpaI GTTAAC 1 cut(s) 390
HpaII CCGG 3 cut(s) 167, 364, 393
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 9 cut(s) 25, 40, 94, 195, 229, 244, 284, 360, 372
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 390
Hpy99I CGWCG 3 cut(s) 136, 139, 151
HpyAV CCTTC 3 cut(s) 136, 239, 330
HpyCH4IV ACGT 1 cut(s) 201
HpyF3I CTNAG 5 cut(s) 24, 180, 226, 359, 383
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 146
KspAI GTTAAC 1 cut(s) 390
Kzo9I GATC 4 cut(s) 120, 279, 291, 355
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 95, 180, 192, 312, 377, 406
MaeII ACGT 1 cut(s) 201
MalI GATC 4 cut(s) 122, 281, 293, 357
MboI GATC 4 cut(s) 120, 279, 291, 355
MboII GAAGA 3 cut(s) 118, 121, 363
MflI RGATCY 2 cut(s) 291, 355
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 11, 373
MlyI GAGTC 1 cut(s) 334
MseI TTAA 3 cut(s) 47, 345, 389
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 3 cut(s) 167, 364, 393
MspR9I CCNGG 1 cut(s) 365
NciI CCSGG 1 cut(s) 365
NdeII GATC 4 cut(s) 120, 279, 291, 355
NlaIV GGNNCC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 3 cut(s) 20, 76, 262
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 293
PsuI RGATCY 2 cut(s) 291, 355
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 47, 345, 389
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 4 cut(s) 120, 279, 291, 355
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 161
SetI ASST 7 cut(s) 30, 53, 161, 200, 204, 331, 389
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 11, 373
SsiI CCGC 4 cut(s) 5, 118, 266, 269
SspI AATATT 1 cut(s) 239
SstI GAGCTC 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 295
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 15, 155
TasI AATT 2 cut(s) 11, 373
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 3 cut(s) 20, 76, 262
Tru1I TTAA 3 cut(s) 47, 345, 389
Tru9I TTAA 3 cut(s) 47, 345, 389
TspDTI ATGAA 2 cut(s) 33, 234
TspGWI ACGGA 4 cut(s) 43, 152, 301, 307
Vha464I CTTAAG 1 cut(s) 344
XapI RAATTY 2 cut(s) 11, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.