pycom05g27010

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011961
Physical Location & Seq
Reverse (-)
28100679 .. 28101361
683 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g27010.1

Sequence Viewer

Length: 609 bp
ATGAAAAAAAGTGTACTCGCTACGATTAGATTCCCCCATTTCATTTCTTTCTCTTCCTCCTCTTCCTCTCTCTATATAAACCCTGCGAAAATCCAAGCTTCTCATAAACCCAACTTCCATTTATATTTCGTTGCAATCAAATTCTCAAATATTGTTAATCCTCCTTTCAGCTCTAGCTCTATGAATCTAGCCATGGCCGACTACGAGTTTCAAGAATCTGAGGTCATCTTCTCCGTGGATAATCTCGACTTCGAGACCTGCTTGGATTTCCGGCGTCACCATCAAAACGACAAGTCGAATTTCTCGAAGAAGAAGAAAATGGGGAAGATTAACAACAACGACAGCAACAATAATATTATCAAGTCTGTGCCGGTGAAAATCCCCAACAACATGTTCAGCGGCTCCGAGGACGACAGCGACGGAGACTACTACAAGGAGGAGGAGTGGGACGGGGGAGAAATGGTGCCGCCGCATCTGATCGTGCGCCGGCGAATTGCCGGGAAGATGGCGTTCTCCCTGTGCACAGGAAACGGGCGGACGCTTAAAGGAAGGGATTTGAGTCGAGTCCGGAATTCGATTCTCAGAATGACTGGTTTCTTGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

203

Amino Acids

22.97

Weight (kDa)

9.18

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 103 - 201 4.1e-27 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 463
AccIII TCCGGA 1 cut(s) 567
AciI CCGC 4 cut(s) 399, 467, 470, 535
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 3 cut(s) 140, 298, 571
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 4 cut(s) 98, 171, 177, 605
AluI AGCT 4 cut(s) 98, 171, 177, 605
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 248, 417
Alw44I GTGCAC 1 cut(s) 520
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 520
ApoI RAATTY 3 cut(s) 140, 298, 571
AspLEI GCGC 1 cut(s) 486
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 2 cut(s) 269, 385
BaeGI GKGCMC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 524
BccI CCATC 2 cut(s) 288, 499
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 248, 417
BfaI CTAG 2 cut(s) 174, 188
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 3 cut(s) 400, 467, 470
BlsI GCNGC 3 cut(s) 401, 468, 471
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 2 cut(s) 403, 465
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 499
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 192, 234, 405
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 4 cut(s) 428, 447, 458, 477
Bse118I RCCGGY 2 cut(s) 370, 486
Bse1I ACTGG 1 cut(s) 595
BseAI TCCGGA 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 192, 234, 405
BseMII CTCAG 2 cut(s) 210, 595
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 3 cut(s) 49, 452, 455
BseSI GKGCMC 1 cut(s) 524
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 463
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 5 cut(s) 271, 371, 487, 498, 568
BslFI GGGAC 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 248, 417
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 524
Bsp13I TCCGGA 1 cut(s) 567
Bsp143I GATC 1 cut(s) 477
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 4 cut(s) 399, 467, 470, 535
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 211, 594
BspEI TCCGGA 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 403, 465
BspMI ACCTGC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 463
BspTNI GGTCTC 1 cut(s) 248
BsrFI RCCGGY 2 cut(s) 370, 486
BsrI ACTGG 1 cut(s) 595
BssAI RCCGGY 2 cut(s) 370, 486
BssECI CCNNGG 3 cut(s) 192, 234, 405
BssMI GATC 1 cut(s) 477
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 58, 67
BstACI GRCGYC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 3 cut(s) 219, 581, 606
BstDSI CCRYGG 2 cut(s) 192, 234
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 1 cut(s) 480
BstMAI GTCTC 2 cut(s) 248, 417
BstMBI GATC 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 197
BtgI CCRYGG 2 cut(s) 192, 234
BveI ACCTGC 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 488
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 2 cut(s) 370, 486
CseI GACGC 2 cut(s) 263, 547
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 193, 391
CviJI RGCY 7 cut(s) 98, 171, 177, 191, 197, 402, 605
CviKI_1 RGCY 7 cut(s) 98, 171, 177, 191, 197, 402, 605
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 219, 581, 606
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 58, 67
EarI CTCTTC 2 cut(s) 58, 67
EciI GGCGGA 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 196, 394
FaiI YATR 7 cut(s) 75, 77, 105, 124, 182, 194, 392
FaqI GGGAC 1 cut(s) 461
FatI CATG 2 cut(s) 192, 390
Fnu4HI GCNGC 3 cut(s) 400, 467, 470
Fsp4HI GCNGC 3 cut(s) 400, 467, 470
FspBI CTAG 2 cut(s) 174, 188
GlaI GCGC 1 cut(s) 485
GluI GCNGC 3 cut(s) 400, 467, 470
HaeIII GGCC 1 cut(s) 197
HapII CCGG 5 cut(s) 271, 371, 487, 498, 568
HgaI GACGC 2 cut(s) 263, 547
HhaI GCGC 1 cut(s) 486
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 2 cut(s) 196, 394
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HindIII AAGCTT 2 cut(s) 96, 603
HinfI GANTC 6 cut(s) 30, 184, 215, 559, 564, 577
HpaII CCGG 5 cut(s) 271, 371, 487, 498, 568
HphI GGTGA 2 cut(s) 269, 385
Hpy166II GTNNAC 2 cut(s) 14, 522
Hpy188I TCNGA 4 cut(s) 220, 406, 477, 584
Hpy188III TCNNGA 5 cut(s) 212, 245, 253, 304, 568
Hpy8I GTNNAC 2 cut(s) 14, 522
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 543
HpyCH4V TGCA 2 cut(s) 134, 522
HpyF3I CTNAG 3 cut(s) 219, 581, 606
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 2 cut(s) 196, 394
HspAI GCGC 1 cut(s) 484
Kpn2I TCCGGA 1 cut(s) 567
KroI GCCGGC 1 cut(s) 486
KroNI GCCGGC 1 cut(s) 488
Kzo9I GATC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 407
LweI GCATC 1 cut(s) 481
MaeI CTAG 2 cut(s) 174, 188
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 8 cut(s) 45, 54, 220, 319, 322, 325, 337, 514
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 4 cut(s) 140, 298, 492, 571
MlyI GAGTC 2 cut(s) 568, 573
MnlI CCTC 8 cut(s) 67, 70, 76, 171, 214, 400, 430, 433
MreI CGCCGGCG 1 cut(s) 486
MroI TCCGGA 1 cut(s) 567
MroNI GCCGGC 1 cut(s) 486
MseI TTAA 3 cut(s) 156, 330, 543
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 5 cut(s) 271, 371, 487, 498, 568
MspR9I CCNGG 1 cut(s) 499
NaeI GCCGGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 499
NcoI CCATGG 1 cut(s) 192
NdeII GATC 1 cut(s) 477
NgoMIV GCCGGC 1 cut(s) 486
NlaIII CATG 2 cut(s) 196, 394
NlaIV GGNNCC 2 cut(s) 403, 465
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 488
PfeI GAWTC 4 cut(s) 30, 184, 215, 577
PkrI GCNGC 3 cut(s) 401, 468, 471
PleI GAGTC 2 cut(s) 567, 572
PpsI GAGTC 2 cut(s) 567, 572
PscI ACATGT 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 403, 465
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 3 cut(s) 156, 330, 543
SatI GCNGC 3 cut(s) 400, 467, 470
Sau3AI GATC 1 cut(s) 477
SchI GAGTC 2 cut(s) 568, 573
ScrFI CCNGG 1 cut(s) 499
SduI GDGCHC 1 cut(s) 524
SetI ASST 6 cut(s) 100, 173, 179, 225, 260, 607
SfaNI GCATC 1 cut(s) 481
SgrAI CRCCGGYG 1 cut(s) 486
Sse9I AATT 4 cut(s) 140, 298, 492, 571
SsiI CCGC 4 cut(s) 399, 467, 470, 535
SspI AATATT 2 cut(s) 151, 355
SspMI CTAG 2 cut(s) 174, 188
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 6 cut(s) 246, 252, 296, 305, 562, 575
TasI AATT 4 cut(s) 140, 298, 492, 571
TatI WGTACW 1 cut(s) 13
TauI GCSGC 3 cut(s) 402, 469, 472
TfiI GAWTC 4 cut(s) 30, 184, 215, 577
Tru1I TTAA 3 cut(s) 156, 330, 543
Tru9I TTAA 3 cut(s) 156, 330, 543
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 17, 31, 197
TspGWI ACGGA 2 cut(s) 223, 435
VneI GTGCAC 1 cut(s) 520
XapI RAATTY 3 cut(s) 140, 298, 571
XceI RCATGY 1 cut(s) 394
XspI CTAG 2 cut(s) 174, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.