pycom10g22590

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011961
Physical Location & Seq
Reverse (-)
24925057 .. 24925494
438 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g22590.1

Sequence Viewer

Length: 438 bp
ATGGCTGACTACGAGTTTCAAGAATCGGAGGTCATCTTCTCCATGGATAATCTTGACTTCGAAACCCGCTTGGATTTCCGGCGTCACCATCAAAACGACAAGTCGAATCTCTCGAAGAAGAAGAAAATGGGAAATGTTAACAACAACAACAACAGCAGCAGCAGCAACAATAATATTATCAAGTCGGTGCCGGTCAAAATCCCCGACAACATGTTCGACCGGTTCAGCGGCTCCGAGGACGACAGCAACGGTGATTACTACAAGGAGGAGCAGTGGGACGGGGGAGATATGGTGCCGCCGCATCTGATCGTGCGGCGGCGTATTGCAGGGAAGATGGCGTTCTCGATGTGCACAGGAAACGGGCGGCCGCTTAAAGGAAGGGCTTTGAGTCAAGTCCGGAATACGATTCTCAGAATGACTGGTTTCTTGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

146

Amino Acids

16.61

Weight (kDa)

7.86

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 33 - 144 3.2e-25 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 292
AccIII TCCGGA 1 cut(s) 396
AciI CCGC 8 cut(s) 67, 228, 296, 299, 313, 316, 364, 368
AcoI YGGCCR 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw21I GWGCWC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 349
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 1 cut(s) 365
ApaLI GTGCAC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 156, 159, 162
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiGI ACCGGT 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 77, 263
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 2 cut(s) 187, 292
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 168, 171, 174
BccI CCATC 2 cut(s) 96, 328
BmiI GGNNCC 3 cut(s) 189, 232, 294
BmsI GCATC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 42, 234
BsaWI WCCGGW 2 cut(s) 219, 396
BsaXI ACNNNNNCTCC 4 cut(s) 257, 276, 287, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 2 cut(s) 190, 219
Bse1I ACTGG 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 42, 234
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 353
BseX3I CGGCCG 1 cut(s) 365
BseXI GCAGC 3 cut(s) 168, 171, 174
Bsh1285I CGRYCG 2 cut(s) 220, 368
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 2 cut(s) 187, 292
BshTI ACCGGT 1 cut(s) 219
BsiEI CGRYCG 2 cut(s) 220, 368
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 4 cut(s) 79, 191, 220, 397
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 1 cut(s) 306
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 8 cut(s) 67, 228, 296, 299, 313, 316, 364, 368
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 189, 232, 294
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 187, 292
BsrFI RCCGGY 2 cut(s) 190, 219
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 2 cut(s) 190, 219
BssECI CCNNGG 2 cut(s) 42, 234
BssMI GATC 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 410, 435
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstMCI CGRYCG 2 cut(s) 220, 368
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 168, 171, 174
BstZI CGGCCG 1 cut(s) 365
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
CciNI GCGGCCGC 1 cut(s) 365
Cfr10I RCCGGY 2 cut(s) 190, 219
CseI GACGC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 219
CviAII CATG 2 cut(s) 43, 211
CviJI RGCY 5 cut(s) 5, 231, 367, 383, 434
CviKI_1 RGCY 5 cut(s) 5, 231, 367, 383, 434
DdeI CTNAG 2 cut(s) 410, 435
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 365
EagI CGGCCG 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 46, 214
FaiI YATR 3 cut(s) 44, 212, 290
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 42, 210
FauI CCCGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 367
HapII CCGG 4 cut(s) 79, 191, 220, 397
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 46, 214
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 4 cut(s) 23, 106, 388, 406
HpaI GTTAAC 1 cut(s) 139
HpaII CCGG 4 cut(s) 79, 191, 220, 397
HphI GGTGA 2 cut(s) 77, 263
Hpy166II GTNNAC 2 cut(s) 139, 351
Hpy188I TCNGA 4 cut(s) 28, 235, 306, 413
Hpy188III TCNNGA 5 cut(s) 20, 53, 112, 343, 397
Hpy8I GTNNAC 2 cut(s) 139, 351
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 326, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 410, 435
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 46, 214
Kpn2I TCCGGA 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 236, 268
LpnPI CCDG 7 cut(s) 92, 204, 233, 312, 339, 405, 410
Lsp1109I GCAGC 3 cut(s) 168, 171, 174
LweI GCATC 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 5 cut(s) 28, 127, 130, 133, 343
MhlI GDGCHC 1 cut(s) 353
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 3 cut(s) 22, 229, 259
MroI TCCGGA 1 cut(s) 396
MseI TTAA 2 cut(s) 138, 372
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 4 cut(s) 79, 191, 220, 397
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 42
NdeII GATC 1 cut(s) 306
NlaIII CATG 2 cut(s) 46, 214
NlaIV GGNNCC 3 cut(s) 189, 232, 294
NmuCI GTSAC 1 cut(s) 83
NotI GCGGCCGC 1 cut(s) 365
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 60
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 3 cut(s) 23, 106, 406
PinAI ACCGGT 1 cut(s) 219
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PscI ACATGT 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 189, 232, 294
SaqAI TTAA 2 cut(s) 138, 372
Sau3AI GATC 1 cut(s) 306
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 353
SetI ASST 2 cut(s) 33, 436
SfaNI GCATC 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 60
SsiI CCGC 8 cut(s) 67, 228, 296, 299, 313, 316, 364, 368
SspI AATATT 1 cut(s) 175
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 60, 104, 113, 216, 344
TauI GCSGC 7 cut(s) 231, 298, 301, 316, 319, 367, 370
TfiI GAWTC 3 cut(s) 23, 106, 406
Tru1I TTAA 2 cut(s) 138, 372
Tru9I TTAA 2 cut(s) 138, 372
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 156, 159, 162
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 1 cut(s) 278
VneI GTGCAC 1 cut(s) 349
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.