AT4G18980

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011961
Physical Location & Seq
Forward (+)
10398857 .. 10399905
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18980.1

Sequence Viewer

Length: 321 bp
ATGTCAGAAGAATTTCAAGAATCTGAGGTTATATTTTCCGATGAGTCTTTCACAAGGAAAGATAACAAGATCAGTCACAACAACGAAAACTACGAAAGAAAGTCGACGGAGAAGGATAAAATTTCATCTCCGGTGAGAATTCCGTCAAGAACTACTATCCGGTATACGGAAGAGGAGGGAGAAATGACACCGCCACATGTCATAATCGAAAAACGAAGAACGGAGGCGCAAATGGCGTTTTCTTTTTGTACCCTTAAAGGAAGAGACTTGAGTCGACACCGTAACACCGTTCTTAGGATGACCGGCTTTTTGGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

106

Amino Acids

12.52

Weight (kDa)

6.31

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 20 - 105 3e-14 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 104, 164, 274
AciI CCGC 1 cut(s) 191
AcsI RAATTY 3 cut(s) 11, 120, 138
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 166, 294
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 258
ApoI RAATTY 3 cut(s) 11, 120, 138
ArsI GACNNNNNNTTYG 1 cut(s) 292
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 289
BsaWI WCCGGW 2 cut(s) 130, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 294
Bse118I RCCGGY 1 cut(s) 302
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 166, 294
BseMII CTCAG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 188
BsiSI CCGG 3 cut(s) 131, 160, 303
BslI CCNNNNNNNGG 2 cut(s) 166, 294
BsmAI GTCTC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssMI GATC 1 cut(s) 69
BssNAI GTATAC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 281, 289
Bst6I CTCTTC 2 cut(s) 165, 256
BstDEI CTNAG 2 cut(s) 24, 293
BstF5I GGATG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 270
BstZ17I GTATAC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 303
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 302
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 197
CviJI RGCY 1 cut(s) 306
CviKI_1 RGCY 1 cut(s) 306
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 2 cut(s) 24, 293
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 165, 256
EarI CTCTTC 2 cut(s) 165, 256
EcoRI GAATTC 1 cut(s) 138
FaeI CATG 1 cut(s) 200
FaiI YATR 4 cut(s) 32, 165, 198, 203
FatI CATG 1 cut(s) 196
FblI GTMKAC 3 cut(s) 104, 164, 274
FokI GGATG 1 cut(s) 310
GlaI GCGC 1 cut(s) 228
HapII CCGG 3 cut(s) 131, 160, 303
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 105, 275
HindII GTYRAC 2 cut(s) 105, 275
HinfI GANTC 3 cut(s) 20, 44, 271
HpaII CCGG 3 cut(s) 131, 160, 303
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 105, 165, 275
Hpy188I TCNGA 3 cut(s) 7, 25, 40
Hpy188III TCNNGA 2 cut(s) 17, 147
Hpy8I GTNNAC 3 cut(s) 105, 165, 275
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 281, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 24, 293
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 3 cut(s) 144, 173, 316
MaeIII GTNAC 2 cut(s) 74, 281
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 4 cut(s) 20, 182, 228, 273
MluCI AATT 3 cut(s) 11, 120, 138
MlyI GAGTC 2 cut(s) 53, 280
MnlI CCTC 4 cut(s) 19, 166, 169, 217
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 255, 319
MspI CCGG 3 cut(s) 131, 160, 303
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 52, 279
PpsI GAGTC 2 cut(s) 52, 279
PscI ACATGT 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 270
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SalI GTCGAC 2 cut(s) 103, 273
SaqAI TTAA 2 cut(s) 255, 319
Sau3AI GATC 1 cut(s) 69
SchI GAGTC 2 cut(s) 53, 280
SetI ASST 1 cut(s) 30
SgeI CNNG 9 cut(s) 29, 66, 79, 143, 159, 172, 209, 280, 315
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 3 cut(s) 11, 120, 138
SsiI CCGC 1 cut(s) 191
TaaI ACNGT 2 cut(s) 281, 289
TaqI TCGA 3 cut(s) 104, 207, 274
TasI AATT 3 cut(s) 11, 120, 138
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 255, 319
Tru9I TTAA 2 cut(s) 255, 319
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 4 cut(s) 122, 132, 182, 236
XapI RAATTY 3 cut(s) 11, 120, 138
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 3 cut(s) 104, 164, 274
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.