RLG00000031959

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011961
Physical Location & Seq
Reverse (-)
9822704 .. 9823078
375 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031959

Sequence Viewer

Length: 375 bp
ATGGCAGAAGAGTTTCAAGAAGCCGAGGTGATCTTCTCGGAGAACGGAGAGTCCTGCTTGGATTTCCGGCAACAACAGCAACAACACGCTAAGCAGTCGTCGGTCACAAAGAAGAAGAAGAAAACGGTGCCCGTGAGGATTCCGAATCATGTGTTCGACTTCCGTGGTGGTGGTGTTCTTAATGACGTCGACGACGATGAGCGTTACTACAAGGACGAAGGCGAGATAGTGCCGCCGCATTTGATCATACGGCGGCGCGTGGAAGGGAAGATGGCGTTTTCGGTGTGCACCGGAAACGGAAGAACTCTGAAAGGGAGGGATTTGAGTCAAGTCCGGAATTCCATTCTCAGGATGACCGGGTTCTTGGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

7.8

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 24 - 123 1.8e-26 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 3 cut(s) 233, 236, 253
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw21I GWGCWC 1 cut(s) 290
Alw44I GTGCAC 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 40
BaeGI GKGCMC 2 cut(s) 132, 290
BanI GGYRCC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 290
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 358
BisI GCNGC 3 cut(s) 233, 236, 254
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 3 cut(s) 234, 237, 255
Bme1390I CCNGG 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 358
Bpu1102I GCTNAGC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 24, 163
BsaWI WCCGGW 2 cut(s) 290, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 348
BseAI TCCGGA 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 24, 163
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 361
BseSI GKGCMC 2 cut(s) 132, 290
Bsh1236I CGCG 1 cut(s) 258
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 4 cut(s) 67, 291, 334, 357
BslI CCNNNNNNNGG 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 132, 290
Bsp13I TCCGGA 1 cut(s) 333
Bsp143I GATC 2 cut(s) 30, 243
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 3 cut(s) 233, 236, 253
BspCNI CTCAG 1 cut(s) 360
BspEI TCCGGA 1 cut(s) 333
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 24, 163
BssMI GATC 2 cut(s) 30, 243
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 90, 347
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 33, 246
BstMBI GATC 2 cut(s) 30, 243
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 356
BstSLI GKGCMC 2 cut(s) 132, 290
BstUI CGCG 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 357
CfoI GCGC 1 cut(s) 258
CviAII CATG 1 cut(s) 149
CviJI RGCY 2 cut(s) 23, 371
CviKI_1 RGCY 2 cut(s) 23, 371
DdeI CTNAG 2 cut(s) 90, 347
DpnI GATC 2 cut(s) 32, 245
DpnII GATC 2 cut(s) 30, 243
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EcoRI GAATTC 1 cut(s) 337
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 150, 248
FatI CATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 243
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 233, 236, 254
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 3 cut(s) 233, 236, 254
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 233, 236, 254
HapII CCGG 4 cut(s) 67, 291, 334, 357
HhaI GCGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 4 cut(s) 50, 139, 145, 325
HpaII CCGG 4 cut(s) 67, 291, 334, 357
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 190, 288
Hpy188I TCNGA 3 cut(s) 40, 144, 309
Hpy188III TCNNGA 3 cut(s) 17, 334, 349
Hpy8I GTNNAC 2 cut(s) 190, 288
Hpy99I CGWCG 4 cut(s) 103, 191, 194, 197
HpyAV CCTTC 2 cut(s) 212, 257
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 90, 347
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 30, 243
LpnPI CCDG 6 cut(s) 67, 80, 304, 334, 347, 370
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 103, 203
MalI GATC 2 cut(s) 32, 245
MboI GATC 2 cut(s) 30, 243
MboII GAAGA 7 cut(s) 20, 25, 124, 127, 130, 280, 312
MhlI GDGCHC 2 cut(s) 132, 290
MluCI AATT 1 cut(s) 337
MlyI GAGTC 2 cut(s) 59, 334
MnlI CCTC 3 cut(s) 19, 129, 309
MroI TCCGGA 1 cut(s) 333
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 180, 373
MspI CCGG 4 cut(s) 67, 291, 334, 357
MspR9I CCNGG 1 cut(s) 358
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 358
NdeII GATC 2 cut(s) 30, 243
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 139, 145
PkrI GCNGC 3 cut(s) 234, 237, 255
PleI GAGTC 2 cut(s) 58, 333
PpsI GAGTC 2 cut(s) 58, 333
PspN4I GGNNCC 1 cut(s) 129
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 180, 373
SatI GCNGC 3 cut(s) 233, 236, 254
Sau3AI GATC 2 cut(s) 30, 243
SchI GAGTC 2 cut(s) 59, 334
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 2 cut(s) 132, 290
SetI ASST 3 cut(s) 30, 189, 373
SgrDI CGTCGACG 1 cut(s) 188
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 233, 236, 253
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 156, 189
TaqII GACCGA 1 cut(s) 91
TasI AATT 1 cut(s) 337
TauI GCSGC 3 cut(s) 235, 238, 256
TfiI GAWTC 2 cut(s) 139, 145
Tru1I TTAA 2 cut(s) 180, 373
Tru9I TTAA 2 cut(s) 180, 373
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspGWI ACGGA 3 cut(s) 60, 152, 312
VneI GTGCAC 1 cut(s) 286
XapI RAATTY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 12
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.