Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

10472280 .. 10473502

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCGCCTCCACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGCGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGGAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTTAGCGATGGAGGACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCGTTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTCTTGCTACCGACCCAGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCAACCAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009743 GO:0009746 GO:0009750 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010033 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034284 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048046 GO:0050896 GO:0055035 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

267

Amino Acids

28.23

Weight (kDa)

5.29

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	67 - 234	1.4e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccII	CGCG	2 cut(s)	68, 626
AciI	CCGC	7 cut(s)	6, 66, 68, 90, 246, 386, 626
AclWI	GGATC	4 cut(s)	150, 163, 257, 743
AcoI	YGGCCR	4 cut(s)	3, 91, 477, 744
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	152, 173
AfiI	CCNNNNNNNGG	3 cut(s)	152, 188, 454
AgsI	TTSAA	4 cut(s)	397, 518, 634, 695
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
AluBI	AGCT	8 cut(s)	204, 260, 292, 352, 453, 512, 585, 646
AluI	AGCT	8 cut(s)	204, 260, 292, 352, 453, 512, 585, 646
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	222, 263
AlwI	GGATC	4 cut(s)	150, 163, 257, 743
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	9 cut(s)	3, 91, 399, 477, 486, 542, 555, 744, 771
ApeKI	GCWGC	3 cut(s)	141, 336, 582
AspA2I	CCTAGG	1 cut(s)	331
AspS9I	GGNCC	7 cut(s)	131, 179, 457, 486, 542, 716, 771
AsuC2I	CCSGG	3 cut(s)	225, 576, 795
AsuHPI	GGTGA	2 cut(s)	189, 649
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	4 cut(s)	131, 179, 457, 716
AvrII	CCTAGG	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	331, 648
BbsI	GAAGAC	2 cut(s)	116, 334
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	153, 323, 594
BccI	CCATC	4 cut(s)	142, 231, 416, 499
BceAI	ACGGC	2 cut(s)	78, 529
BcnI	CCSGG	3 cut(s)	225, 576, 795
BcoDI	GTCTC	2 cut(s)	222, 263
BfaI	CTAG	4 cut(s)	293, 332, 360, 450
BfmI	CTRYAG	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	300
BglI	GCCNNNNNGGC	2 cut(s)	47, 485
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	6 cut(s)	7, 70, 92, 143, 338, 584
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	225, 576, 795
Bme18I	GGWCC	4 cut(s)	131, 179, 457, 716
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	7 cut(s)	131, 179, 457, 486, 542, 716, 771
BmiI	GGNNCC	6 cut(s)	132, 157, 180, 284, 328, 717
BmrFI	CCNGG	3 cut(s)	225, 576, 795
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	2 cut(s)	116, 334
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	477, 632
BpuMI	CCSGG	3 cut(s)	225, 576, 795
BsaJI	CCNNGG	7 cut(s)	66, 82, 146, 223, 331, 558, 574
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 188, 454
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	712, 752
BseDI	CCNNGG	7 cut(s)	66, 82, 146, 223, 331, 558, 574
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	152, 188, 454
BseMII	CTCAG	2 cut(s)	339, 479
BseNI	ACTGG	2 cut(s)	712, 752
BseRI	GAGGAG	1 cut(s)	16
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	153, 323, 594
Bsh1236I	CGCG	2 cut(s)	68, 626
Bsh1285I	CGRYCG	2 cut(s)	94, 163
BshFI	GGCC	9 cut(s)	5, 93, 401, 479, 488, 544, 557, 746, 773
BsiEI	CGRYCG	2 cut(s)	94, 163
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	6 cut(s)	42, 213, 225, 402, 576, 795
BslFI	GGGAC	2 cut(s)	254, 729
BslI	CCNNNNNNNGG	3 cut(s)	152, 188, 454
BsmAI	GTCTC	2 cut(s)	222, 263
BsmFI	GGGAC	2 cut(s)	254, 729
BsnI	GGCC	9 cut(s)	5, 93, 401, 479, 488, 544, 557, 746, 773
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	331, 648
Bsp143I	GATC	4 cut(s)	155, 262, 411, 748
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	7 cut(s)	6, 66, 68, 90, 246, 386, 626
BspANI	GGCC	9 cut(s)	5, 93, 401, 479, 488, 544, 557, 746, 773
BspCNI	CTCAG	2 cut(s)	340, 478
BspFNI	CGCG	2 cut(s)	68, 626
BspLI	GGNNCC	6 cut(s)	132, 157, 180, 284, 328, 717
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	4 cut(s)	150, 163, 257, 743
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	712, 752
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	7 cut(s)	66, 82, 146, 223, 331, 558, 574
BssMI	GATC	4 cut(s)	155, 262, 411, 748
BssT1I	CCWWGG	2 cut(s)	146, 331
Bst4CI	ACNGT	2 cut(s)	115, 287
BstDEI	CTNAG	2 cut(s)	348, 465
BstDSI	CCRYGG	2 cut(s)	66, 146
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	68, 626
BstKTI	GATC	4 cut(s)	158, 265, 414, 751
BstMAI	GTCTC	2 cut(s)	222, 263
BstMBI	GATC	4 cut(s)	155, 262, 411, 748
BstMCI	CGRYCG	2 cut(s)	94, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 485
BstSCI	CCNGG	3 cut(s)	223, 574, 793
BstSFI	CTRYAG	1 cut(s)	523
BstUI	CGCG	2 cut(s)	68, 626
BstV1I	GCAGC	3 cut(s)	153, 323, 594
BstV2I	GAAGAC	2 cut(s)	116, 334
BstX2I	RGATCY	2 cut(s)	155, 411
BstYI	RGATCY	2 cut(s)	155, 411
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	9 cut(s)	5, 93, 401, 479, 488, 544, 557, 746, 773
BtgI	CCRYGG	2 cut(s)	66, 146
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	705
BveI	ACCTGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	7 cut(s)	131, 179, 457, 486, 542, 716, 771
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	151, 172
CviAII	CATG	2 cut(s)	147, 768
CviQI	GTAC	2 cut(s)	151, 172
DdeI	CTNAG	2 cut(s)	348, 465
DpnI	GATC	4 cut(s)	157, 264, 413, 750
DpnII	GATC	4 cut(s)	155, 262, 411, 748
EaeI	YGGCCR	4 cut(s)	3, 91, 477, 744
EagI	CGGCCG	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	646
EclXI	CGGCCG	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	146, 331
Eco24I	GRGCYC	2 cut(s)	331, 648
Eco47I	GGWCC	4 cut(s)	131, 179, 457, 716
Eco52I	CGGCCG	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	146, 331
EcoT38I	GRGCYC	2 cut(s)	331, 648
ErhI	CCWWGG	2 cut(s)	146, 331
FaeI	CATG	2 cut(s)	150, 771
FaiI	YATR	5 cut(s)	148, 320, 668, 677, 769
FaqI	GGGAC	2 cut(s)	254, 729
FatI	CATG	2 cut(s)	146, 767
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	2 cut(s)	331, 648
Fsp4HI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
FspBI	CTAG	4 cut(s)	293, 332, 360, 450
GluI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
HaeIII	GGCC	9 cut(s)	5, 93, 401, 479, 488, 544, 557, 746, 773
HapII	CCGG	6 cut(s)	42, 213, 225, 402, 576, 795
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	150, 771
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	6 cut(s)	165, 194, 369, 429, 528, 684
HpaII	CCGG	6 cut(s)	42, 213, 225, 402, 576, 795
HphI	GGTGA	2 cut(s)	189, 649
Hpy166II	GTNNAC	4 cut(s)	55, 407, 460, 757
Hpy188I	TCNGA	6 cut(s)	76, 86, 160, 326, 380, 468
Hpy188III	TCNNGA	3 cut(s)	266, 502, 649
Hpy8I	GTNNAC	4 cut(s)	55, 407, 460, 757
HpyAV	CCTTC	5 cut(s)	46, 512, 628, 634, 784
HpyCH4III	ACNGT	2 cut(s)	115, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 485
HpyF3I	CTNAG	2 cut(s)	348, 465
Hsp92II	CATG	2 cut(s)	150, 771
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	155, 262, 411, 748
LmnI	GCTCC	3 cut(s)	326, 509, 643
Lsp1109I	GCAGC	3 cut(s)	153, 323, 594
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	4 cut(s)	293, 332, 360, 450
MaeIII	GTNAC	3 cut(s)	97, 195, 703
MalI	GATC	4 cut(s)	157, 264, 413, 750
MboI	GATC	4 cut(s)	155, 262, 411, 748
MboII	GAAGA	4 cut(s)	121, 334, 669, 679
MflI	RGATCY	2 cut(s)	155, 411
MhlI	GDGCHC	2 cut(s)	331, 648
MlsI	TGGCCA	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	5 cut(s)	174, 203, 378, 423, 537
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	9 cut(s)	19, 37, 92, 99, 376, 419, 547, 553, 610
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	3 cut(s)	68, 248, 260
MspI	CCGG	6 cut(s)	42, 213, 225, 402, 576, 795
MspR9I	CCNGG	3 cut(s)	225, 576, 795
MvnI	CGCG	2 cut(s)	68, 626
MwoI	GCNNNNNNNGC	2 cut(s)	47, 485
NciI	CCSGG	3 cut(s)	225, 576, 795
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	4 cut(s)	155, 262, 411, 748
NlaIII	CATG	2 cut(s)	150, 771
NlaIV	GGNNCC	6 cut(s)	132, 157, 180, 284, 328, 717
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	3 cut(s)	97, 195, 703
PaqCI	CACCTGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	684
PflFI	GACNNNGTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	6 cut(s)	7, 70, 92, 143, 338, 584
PleI	GAGTC	5 cut(s)	173, 202, 377, 423, 536
PpsI	GAGTC	5 cut(s)	173, 202, 377, 423, 536
Psp124BI	GAGCTC	1 cut(s)	648
PspN4I	GGNNCC	6 cut(s)	132, 157, 180, 284, 328, 717
PspPI	GGNCC	7 cut(s)	131, 179, 457, 486, 542, 716, 771
PsuI	RGATCY	2 cut(s)	155, 411
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	152, 173
RsaNI	GTAC	2 cut(s)	151, 172
SacI	GAGCTC	1 cut(s)	648
SacII	CCGCGG	1 cut(s)	69
SatI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
Sau3AI	GATC	4 cut(s)	155, 262, 411, 748
Sau96I	GGNCC	7 cut(s)	131, 179, 457, 486, 542, 716, 771
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	5 cut(s)	174, 203, 378, 423, 537
ScrFI	CCNGG	3 cut(s)	225, 576, 795
SduI	GDGCHC	2 cut(s)	331, 648
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	523
SfiI	GGCCNNNNNGGCC	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	4 cut(s)	131, 179, 457, 716
SmlI	CTYRAG	2 cut(s)	492, 647
SmoI	CTYRAG	2 cut(s)	492, 647
SsiI	CCGC	7 cut(s)	6, 66, 68, 90, 246, 386, 626
SspMI	CTAG	4 cut(s)	293, 332, 360, 450
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	3 cut(s)	223, 574, 793
StyI	CCWWGG	2 cut(s)	146, 331
TaaI	ACNGT	2 cut(s)	115, 287
TaqI	TCGA	2 cut(s)	432, 588
TaqII	GACCGA	2 cut(s)	177, 733
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	3 cut(s)	8, 71, 93
TfiI	GAWTC	1 cut(s)	684
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	3 cut(s)	97, 195, 703
TseI	GCWGC	3 cut(s)	141, 336, 582
Tsp45I	GTSAC	3 cut(s)	97, 195, 703
TspGWI	ACGGA	4 cut(s)	168, 249, 381, 669
TspRI	CASTG	1 cut(s)	712
Tth111I	GACNNNGTC	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	4 cut(s)	131, 179, 457, 716
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	4 cut(s)	293, 332, 360, 450
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.