Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

3725892 .. 3726970

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTGCTTCCATGGCTCTGTCTTCCCCAACATTCGCCGGCAAGGCCGTGCAACTTGCTCCGGGAGCCACCGAGCTTTTCGGCAACGGAAGAGTCTCCATGAGGAAAACTGGGGCCAAGCAAGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACAGAGTTAAGTACTTGGGCCCATTCTCTGGTGAGCCCCCAAGTTACCTAACTGGTGAGTTCCCTGGTGACTATGGCTGGGACACTGCTGGGCTTTCAGCTGACCCAGAGACCTTCGCCAAGAACCGTGAGCTTGAGGTGATCCACTCCAGATGGGCCATGCTAGGAGCTCTTGGGTGCGTTTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAGTTCGGTGAAGCCGTGTGGTTCAAGGCCGGAGCCCAAATCTTCAGCGAGGGCGGTCTTGACTACTTGGGCAACCCTAGCTTGGTCCATGCCCAAAGCATCTTGGCCATCTGGGCTACCCAAGTTGTGTTGATGGGTGCAGTTGAGGGATACAGAATTGCTGGTGGGCCACTTGGAGAGATAACTGACCCACTTTACCCAGGTGGAAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAACGGTAGATTGGCCATGTTCTCCATGTTCGGCTTCTTTGTCCAGGCCATTGTCACCGGAAAGGGACCATTGGAGAACCTTGCTGACCACCTTGCAGACCCAGTCAACAACAACGCCTGGTCCTATGCCACTAACTTTGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

265

Amino Acids

28.03

Weight (kDa)

5.14

Isoelectric Point (pI)

21.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AciI	CCGC	2 cut(s)	355, 420
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	2 cut(s)	471, 654
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	2 cut(s)	146, 167
AfiI	CCNNNNNNNGG	3 cut(s)	146, 182, 448
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	4 cut(s)	217, 565, 684, 758
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	9 cut(s)	76, 254, 286, 323, 346, 447, 576, 622, 637
AluI	AGCT	9 cut(s)	76, 254, 286, 323, 346, 447, 576, 622, 637
Alw21I	GWGCWC	4 cut(s)	325, 348, 624, 639
Alw26I	GTCTC	2 cut(s)	100, 257
AlwI	GGATC	1 cut(s)	289
ApaI	GGGCCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	5
AsuC2I	CCSGG	2 cut(s)	63, 786
AsuHPI	GGTGA	7 cut(s)	197, 221, 233, 304, 386, 640, 688
AvaII	GGWCC	3 cut(s)	451, 707, 762
BaeGI	GKGCMC	1 cut(s)	176
BalI	TGGCCA	2 cut(s)	473, 656
BanII	GRGCYC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	4 cut(s)	325, 348, 624, 639
BccI	CCATC	3 cut(s)	300, 482, 493
BceAI	ACGGC	3 cut(s)	32, 163, 365
BciT130I	CCWGG	4 cut(s)	219, 567, 686, 760
BciVI	GTATCC	1 cut(s)	509
BcnI	CCSGG	2 cut(s)	63, 786
BcoDI	GTCTC	2 cut(s)	100, 257
BfaI	CTAG	2 cut(s)	317, 444
BfuI	GTATCC	1 cut(s)	509
BglI	GCCNNNNNGGC	2 cut(s)	44, 479
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	63, 219, 567, 686, 760, 786
Bme18I	GGWCC	3 cut(s)	451, 707, 762
BmiI	GGNNCC	5 cut(s)	67, 115, 174, 400, 708
BmrFI	CCNGG	6 cut(s)	63, 219, 567, 686, 760, 786
BmrI	ACTGGG	2 cut(s)	120, 737
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	2 cut(s)	120, 737
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	3 cut(s)	308, 608, 623
BpuMI	CCSGG	2 cut(s)	63, 786
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	12, 140, 217, 565, 784
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 182, 448
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	3 cut(s)	115, 211, 743
BseBI	CCWGG	4 cut(s)	219, 567, 686, 760
BseDI	CCNNGG	5 cut(s)	12, 140, 217, 565, 784
BseLI	CCNNNNNNNGG	3 cut(s)	146, 182, 448
BseMII	CTCAG	2 cut(s)	333, 609
BseNI	ACTGG	3 cut(s)	115, 211, 743
BseSI	GKGCMC	1 cut(s)	176
BseYI	CCCAGC	2 cut(s)	231, 242
BsgI	GTGCAG	1 cut(s)	525
BsiHKAI	GWGCWC	4 cut(s)	325, 348, 624, 639
BsiSI	CCGG	5 cut(s)	39, 62, 396, 699, 786
BslFI	GGGAC	3 cut(s)	248, 720, 767
BslI	CCNNNNNNNGG	3 cut(s)	146, 182, 448
BsmAI	GTCTC	2 cut(s)	100, 257
BsmFI	GGGAC	3 cut(s)	248, 720, 767
Bso31I	GGTCTC	1 cut(s)	257
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
Bsp143I	GATC	1 cut(s)	294
Bsp1720I	GCTNAGC	1 cut(s)	618
Bsp19I	CCATGG	2 cut(s)	12, 140
BspACI	CCGC	2 cut(s)	355, 420
BspCNI	CTCAG	2 cut(s)	334, 610
BspLI	GGNNCC	5 cut(s)	67, 115, 174, 400, 708
BspPI	GGATC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	115, 211, 743
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	5 cut(s)	12, 140, 217, 565, 784
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	12, 140
Bst2UI	CCWGG	4 cut(s)	219, 567, 686, 760
Bst4CI	ACNGT	3 cut(s)	281, 362, 647
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	40, 355
BstDEI	CTNAG	2 cut(s)	342, 618
BstDSI	CCRYGG	2 cut(s)	12, 140
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	100, 257
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 44, 65, 444, 479
BstNI	CCWGG	4 cut(s)	219, 567, 686, 760
BstSCI	CCNGG	6 cut(s)	61, 217, 565, 684, 758, 784
BstSLI	GKGCMC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	509
BtgI	CCRYGG	2 cut(s)	12, 140
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	40, 355
Cfr10I	RCCGGY	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	145, 166
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	7 cut(s)	13, 100, 141, 313, 455, 658, 667
CviQI	GTAC	2 cut(s)	145, 166
DdeI	CTNAG	2 cut(s)	342, 618
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	2 cut(s)	471, 654
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Ecl136II	GAGCTC	4 cut(s)	323, 346, 622, 637
Eco130I	CCWWGG	2 cut(s)	12, 140
Eco24I	GRGCYC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	3 cut(s)	451, 707, 762
Eco53kI	GAGCTC	4 cut(s)	323, 346, 622, 637
Eco57I	CTGAAG	1 cut(s)	394
EcoICRI	GAGCTC	4 cut(s)	323, 346, 622, 637
EcoRII	CCWGG	4 cut(s)	217, 565, 684, 758
EcoT14I	CCWWGG	2 cut(s)	12, 140
EcoT38I	GRGCYC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
ErhI	CCWWGG	2 cut(s)	12, 140
FaeI	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
FaiI	YATR	9 cut(s)	14, 101, 142, 228, 314, 456, 659, 668, 768
FaqI	GGGAC	3 cut(s)	248, 720, 767
FatI	CATG	7 cut(s)	12, 99, 140, 312, 454, 657, 666
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	317, 444
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	2 cut(s)	235, 246
GsuI	CTGGAG	1 cut(s)	286
HapII	CCGG	5 cut(s)	39, 62, 396, 699, 786
Hin1II	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	5 cut(s)	39, 62, 396, 699, 786
HphI	GGTGA	7 cut(s)	197, 221, 233, 304, 386, 640, 688
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188III	TCNNGA	4 cut(s)	132, 303, 425, 640
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	2 cut(s)	277, 625
HpyCH4III	ACNGT	3 cut(s)	281, 362, 647
HpyCH4V	TGCA	3 cut(s)	52, 506, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 44, 65, 444, 479
HpyF3I	CTNAG	2 cut(s)	342, 618
Hsp92II	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	5 cut(s)	64, 65, 320, 398, 634
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	2 cut(s)	317, 444
MaeIII	GTNAC	3 cut(s)	197, 221, 694
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	3 cut(s)	15, 102, 400
MhlI	GDGCHC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
MlsI	TGGCCA	2 cut(s)	473, 656
MluCI	AATT	1 cut(s)	522
MluNI	TGGCCA	2 cut(s)	473, 656
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	96, 139, 283, 409, 505, 601
Mox20I	TGGCCA	2 cut(s)	473, 656
MroNI	GCCGGC	1 cut(s)	38
MscI	TGGCCA	2 cut(s)	473, 656
MseI	TTAA	1 cut(s)	162
Msp20I	TGGCCA	2 cut(s)	473, 656
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	5 cut(s)	39, 62, 396, 699, 786
MspR9I	CCNGG	6 cut(s)	63, 219, 567, 686, 760, 786
MvaI	CCWGG	4 cut(s)	219, 567, 686, 760
MwoI	GCNNNNNNNGC	5 cut(s)	14, 44, 65, 444, 479
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	2 cut(s)	63, 786
NcoI	CCATGG	2 cut(s)	12, 140
NdeII	GATC	1 cut(s)	294
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
NlaIV	GGNNCC	5 cut(s)	67, 115, 174, 400, 708
NmuCI	GTSAC	2 cut(s)	221, 694
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	743
PflMI	CCANNNNNTGG	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	4 cut(s)	325, 348, 624, 639
Psp6I	CCWGG	4 cut(s)	217, 565, 684, 758
PspFI	CCCAGC	2 cut(s)	231, 242
PspGI	CCWGG	4 cut(s)	217, 565, 684, 758
PspN4I	GGNNCC	5 cut(s)	67, 115, 174, 400, 708
PspOMI	GGGCCC	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	146, 167
RsaNI	GTAC	2 cut(s)	145, 166
SacI	GAGCTC	4 cut(s)	325, 348, 624, 639
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	6 cut(s)	63, 219, 567, 686, 760, 786
SduI	GDGCHC	7 cut(s)	176, 192, 325, 348, 403, 624, 639
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	3 cut(s)	451, 707, 762
SmlI	CTYRAG	3 cut(s)	287, 623, 638
SmoI	CTYRAG	3 cut(s)	287, 623, 638
Sse9I	AATT	1 cut(s)	522
SsiI	CCGC	2 cut(s)	355, 420
SspMI	CTAG	2 cut(s)	317, 444
SstI	GAGCTC	4 cut(s)	325, 348, 624, 639
StyD4I	CCNGG	6 cut(s)	61, 217, 565, 684, 758, 784
StyI	CCWWGG	2 cut(s)	12, 140
TaaI	ACNGT	3 cut(s)	281, 362, 647
TasI	AATT	1 cut(s)	522
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	221, 694
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	221, 694
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	743
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	451, 707, 762
XspI	CTAG	2 cut(s)	317, 444
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.