Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

42174118 .. 42175040

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1289300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGTCAATCACAACCACCCATCATCCTCTCTTCCCTCAACTGTTTTTTCCTTCTACTTGTATCAAAATTAGTTTTGCAATGGCTGCTTCCATGGCTCTCTCTTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAACGGAAGAGTGTCCATGAGGAAAACTGCTACCAAACAAGTTTCCTCTGGCAGCCCTTGGTATGGCCCTGACAGAGTCAAGTACTTAGGCCCATTCTCCGGTGAGCCCCCAAGCTACCTCAAGGGCGAGTTCCCCGGTGACTACGGCTGGGACACCGCTGGACTCTCAGCCGACCCAGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTCGGAGCTCTTGGATGCGTTTTCCCCGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAGGCTGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACCTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACCCAAGTTGTGTTGATGGGAGCAGTTGAGGGATACAGAATTGCCGGCGGACCCCTCGGAGAGGTGACCGACCCCCTTTACCCCGGCGGAAGCTTCGACCCCTTGGGCCTTGCTGACGACCCAGAAGCCTTTGCCGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTCGGATTCTTTGTCCAGGCCATCGTCACCGGAAAGGGACCATTGGAGAACCTTGCCGACCACCTCGCTGACCCAGTCGCCAACAATGCCTGGAACTACGCCACAAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

292

Amino Acids

31.18

Weight (kDa)

5.97

Isoelectric Point (pI)

23.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	91 - 258	1.2e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	321, 436, 501, 612, 651
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	2 cut(s)	552, 735
AcuI	CTGAAG	1 cut(s)	475
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	227, 263, 529, 625
AgsI	TTSAA	1 cut(s)	472
AjnI	CCWGG	3 cut(s)	513, 765, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	9 cut(s)	157, 279, 367, 404, 427, 528, 657, 703, 718
AluI	AGCT	9 cut(s)	157, 279, 367, 404, 427, 528, 657, 703, 718
Alw21I	GWGCWC	5 cut(s)	369, 406, 429, 705, 720
Alw26I	GTCTC	2 cut(s)	338, 509
AlwI	GGATC	1 cut(s)	370
Ama87I	CYCGRG	2 cut(s)	142, 422
AoxI	GGCC	8 cut(s)	229, 253, 390, 474, 552, 670, 735, 768
ApeKI	GCWGC	2 cut(s)	86, 216
AspS9I	GGNCC	7 cut(s)	230, 254, 390, 532, 614, 670, 788
AsuC2I	CCSGG	5 cut(s)	143, 144, 300, 648, 867
AsuHPI	GGTGA	5 cut(s)	278, 314, 640, 721, 769
AvaI	CYCGRG	2 cut(s)	142, 422
AvaII	GGWCC	3 cut(s)	532, 614, 788
BalI	TGGCCA	2 cut(s)	554, 737
BanII	GRGCYC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
Bbv12I	GWGCWC	5 cut(s)	369, 406, 429, 705, 720
BbvI	GCAGC	2 cut(s)	73, 228
BccI	CCATC	5 cut(s)	30, 381, 563, 574, 779
BceAI	ACGGC	2 cut(s)	113, 325
BciT130I	CCWGG	3 cut(s)	515, 767, 841
BciVI	GTATCC	1 cut(s)	590
BcnI	CCSGG	5 cut(s)	143, 144, 300, 648, 867
BcoDI	GTCTC	2 cut(s)	338, 509
BfaI	CTAG	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	590
BglI	GCCNNNNNGGC	1 cut(s)	560
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	2 cut(s)	87, 217
BlsI	GCNGC	2 cut(s)	88, 218
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	8 cut(s)	143, 144, 300, 515, 648, 767, 841, 867
Bme18I	GGWCC	3 cut(s)	532, 614, 788
BmeT110I	CYCGRG	2 cut(s)	142, 422
BmgT120I	GGNCC	7 cut(s)	230, 254, 390, 532, 614, 670, 788
BmiI	GGNNCC	4 cut(s)	148, 481, 616, 789
BmrFI	CCNGG	8 cut(s)	143, 144, 300, 515, 648, 767, 841, 867
BmrI	ACTGGG	1 cut(s)	818
BmsI	GCATC	2 cut(s)	401, 555
BmuI	ACTGGG	1 cut(s)	818
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	3 cut(s)	269, 689, 704
BpuMI	CCSGG	5 cut(s)	143, 144, 300, 648, 867
BsaI	GGTCTC	2 cut(s)	338, 509
BsaJI	CCNNGG	9 cut(s)	93, 141, 142, 221, 298, 514, 619, 646, 666
BsaWI	WCCGGW	2 cut(s)	263, 779
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 263, 529, 625
Bse118I	RCCGGY	2 cut(s)	119, 608
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	3 cut(s)	515, 767, 841
BseDI	CCNNGG	9 cut(s)	93, 141, 142, 221, 298, 514, 619, 646, 666
BseGI	GGATG	2 cut(s)	25, 416
BseLI	CCNNNNNNNGG	4 cut(s)	227, 263, 529, 625
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	824
BseXI	GCAGC	2 cut(s)	73, 228
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	8 cut(s)	231, 255, 392, 476, 554, 672, 737, 770
BsiHKAI	GWGCWC	5 cut(s)	369, 406, 429, 705, 720
BsiHKCI	CYCGRG	2 cut(s)	142, 422
BsiSI	CCGG	9 cut(s)	120, 143, 264, 300, 477, 609, 648, 780, 867
BslFI	GGGAC	3 cut(s)	329, 418, 801
BslI	CCNNNNNNNGG	4 cut(s)	227, 263, 529, 625
BsmAI	GTCTC	2 cut(s)	338, 509
BsmFI	GGGAC	3 cut(s)	329, 418, 801
BsnI	GGCC	8 cut(s)	231, 255, 392, 476, 554, 672, 737, 770
Bso31I	GGTCTC	2 cut(s)	338, 509
BsoBI	CYCGRG	2 cut(s)	142, 422
Bsp1286I	GDGCHC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
Bsp143I	GATC	2 cut(s)	375, 486
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	5 cut(s)	321, 436, 501, 612, 651
BspANI	GGCC	8 cut(s)	231, 255, 392, 476, 554, 672, 737, 770
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	4 cut(s)	148, 481, 616, 789
BspPI	GGATC	1 cut(s)	370
BspTNI	GGTCTC	2 cut(s)	338, 509
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	2 cut(s)	119, 608
BsrI	ACTGG	1 cut(s)	824
BssAI	RCCGGY	2 cut(s)	119, 608
BssECI	CCNNGG	9 cut(s)	93, 141, 142, 221, 298, 514, 619, 646, 666
BssMI	GATC	2 cut(s)	375, 486
BssT1I	CCWWGG	3 cut(s)	93, 221, 666
Bst2UI	CCWGG	3 cut(s)	515, 767, 841
Bst4CI	ACNGT	3 cut(s)	45, 362, 443
Bst6I	CTCTTC	3 cut(s)	38, 109, 166
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	121, 610
BstDEI	CTNAG	2 cut(s)	250, 331
BstDSI	CCRYGG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	628
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	25, 416
BstKTI	GATC	2 cut(s)	378, 489
BstMAI	GTCTC	2 cut(s)	338, 509
BstMBI	GATC	2 cut(s)	375, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 95, 125, 560, 836
BstNI	CCWGG	3 cut(s)	515, 767, 841
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	8 cut(s)	141, 142, 298, 513, 646, 765, 839, 865
BstV1I	GCAGC	2 cut(s)	73, 228
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	8 cut(s)	231, 255, 392, 476, 554, 672, 737, 770
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	25, 416
Cac8I	GCNNGC	2 cut(s)	121, 610
Cfr10I	RCCGGY	2 cut(s)	119, 608
Cfr13I	GGNCC	7 cut(s)	230, 254, 390, 532, 614, 670, 788
Cfr9I	CCCGGG	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
CviAII	CATG	6 cut(s)	94, 181, 394, 536, 739, 748
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	250, 331
DpnI	GATC	2 cut(s)	377, 488
DpnII	GATC	2 cut(s)	375, 486
EaeI	YGGCCR	2 cut(s)	552, 735
Eam1104I	CTCTTC	3 cut(s)	38, 109, 166
EarI	CTCTTC	3 cut(s)	38, 109, 166
EciI	GGCGGA	2 cut(s)	627, 666
Ecl136II	GAGCTC	5 cut(s)	367, 404, 427, 703, 718
Eco130I	CCWWGG	3 cut(s)	93, 221, 666
Eco24I	GRGCYC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
Eco31I	GGTCTC	2 cut(s)	338, 509
Eco47I	GGWCC	3 cut(s)	532, 614, 788
Eco53kI	GAGCTC	5 cut(s)	367, 404, 427, 703, 718
Eco57I	CTGAAG	1 cut(s)	475
Eco88I	CYCGRG	2 cut(s)	142, 422
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	5 cut(s)	367, 404, 427, 703, 718
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	628
EcoRII	CCWGG	3 cut(s)	513, 765, 839
EcoT14I	CCWWGG	3 cut(s)	93, 221, 666
EcoT38I	GRGCYC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
ErhI	CCWWGG	3 cut(s)	93, 221, 666
FaeI	CATG	6 cut(s)	97, 184, 397, 539, 742, 751
FaiI	YATR	7 cut(s)	95, 182, 228, 395, 537, 740, 749
FaqI	GGGAC	3 cut(s)	329, 418, 801
FatI	CATG	6 cut(s)	93, 180, 393, 535, 738, 747
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	87, 217
FokI	GGATG	2 cut(s)	12, 423
FriOI	GRGCYC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
Fsp4HI	GCNGC	2 cut(s)	87, 217
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	2 cut(s)	87, 217
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	8 cut(s)	231, 255, 392, 476, 554, 672, 737, 770
HapII	CCGG	9 cut(s)	120, 143, 264, 300, 477, 609, 648, 780, 867
Hin1II	CATG	6 cut(s)	97, 184, 397, 539, 742, 751
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	3 cut(s)	240, 327, 756
HpaII	CCGG	9 cut(s)	120, 143, 264, 300, 477, 609, 648, 780, 867
HphI	GGTGA	5 cut(s)	278, 314, 640, 721, 769
Hpy188I	TCNGA	4 cut(s)	164, 401, 623, 755
Hpy188III	TCNNGA	3 cut(s)	384, 506, 721
HpyAV	CCTTC	5 cut(s)	63, 124, 358, 706, 723
HpyCH4III	ACNGT	3 cut(s)	45, 362, 443
HpyCH4V	TGCA	3 cut(s)	80, 133, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 95, 125, 560, 836
HpyF3I	CTNAG	2 cut(s)	250, 331
Hsp92II	CATG	6 cut(s)	97, 184, 397, 539, 742, 751
KroI	GCCGGC	2 cut(s)	119, 608
KroNI	GCCGGC	2 cut(s)	121, 610
Kzo9I	GATC	2 cut(s)	375, 486
LmnI	GCTCC	5 cut(s)	146, 401, 479, 584, 715
Lsp1109I	GCAGC	2 cut(s)	73, 228
LweI	GCATC	2 cut(s)	401, 555
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	302, 628, 775
MalI	GATC	2 cut(s)	377, 488
MboI	GATC	2 cut(s)	375, 486
MboII	GAAGA	4 cut(s)	25, 96, 183, 481
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
MlsI	TGGCCA	2 cut(s)	554, 737
MluCI	AATT	2 cut(s)	69, 603
MluNI	TGGCCA	2 cut(s)	554, 737
MlyI	GAGTC	2 cut(s)	249, 321
Mox20I	TGGCCA	2 cut(s)	554, 737
MroNI	GCCGGC	2 cut(s)	119, 608
MscI	TGGCCA	2 cut(s)	554, 737
Msp20I	TGGCCA	2 cut(s)	554, 737
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	9 cut(s)	120, 143, 264, 300, 477, 609, 648, 780, 867
MspR9I	CCNGG	8 cut(s)	143, 144, 300, 515, 648, 767, 841, 867
MvaI	CCWGG	3 cut(s)	515, 767, 841
MwoI	GCNNNNNNNGC	5 cut(s)	86, 95, 125, 560, 836
NaeI	GCCGGC	2 cut(s)	121, 610
NciI	CCSGG	5 cut(s)	143, 144, 300, 648, 867
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	375, 486
NgoMIV	GCCGGC	2 cut(s)	119, 608
NlaIII	CATG	6 cut(s)	97, 184, 397, 539, 742, 751
NlaIV	GGNNCC	4 cut(s)	148, 481, 616, 789
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	3 cut(s)	302, 628, 775
PdiI	GCCGGC	2 cut(s)	121, 610
PfeI	GAWTC	1 cut(s)	756
PflFI	GACNNNGTC	2 cut(s)	239, 824
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	2 cut(s)	88, 218
PleI	GAGTC	2 cut(s)	248, 321
PpsI	GAGTC	2 cut(s)	248, 321
Psp124BI	GAGCTC	5 cut(s)	369, 406, 429, 705, 720
Psp6I	CCWGG	3 cut(s)	513, 765, 839
PspEI	GGTNACC	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	3 cut(s)	513, 765, 839
PspN4I	GGNNCC	4 cut(s)	148, 481, 616, 789
PspPI	GGNCC	7 cut(s)	230, 254, 390, 532, 614, 670, 788
PsuI	RGATCY	1 cut(s)	486
PsyI	GACNNNGTC	2 cut(s)	239, 824
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	5 cut(s)	369, 406, 429, 705, 720
SatI	GCNGC	2 cut(s)	87, 217
Sau3AI	GATC	2 cut(s)	375, 486
Sau96I	GGNCC	7 cut(s)	230, 254, 390, 532, 614, 670, 788
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	2 cut(s)	249, 321
ScrFI	CCNGG	8 cut(s)	143, 144, 300, 515, 648, 767, 841, 867
SduI	GDGCHC	7 cut(s)	273, 369, 406, 429, 484, 705, 720
SfaNI	GCATC	2 cut(s)	401, 555
SinI	GGWCC	3 cut(s)	532, 614, 788
SmaI	CCCGGG	1 cut(s)	144
SmlI	CTYRAG	3 cut(s)	284, 704, 719
SmoI	CTYRAG	3 cut(s)	284, 704, 719
Sse9I	AATT	2 cut(s)	69, 603
SsiI	CCGC	5 cut(s)	321, 436, 501, 612, 651
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	5 cut(s)	369, 406, 429, 705, 720
StyD4I	CCNGG	8 cut(s)	141, 142, 298, 513, 646, 765, 839, 865
StyI	CCWWGG	3 cut(s)	93, 221, 666
TaaI	ACNGT	3 cut(s)	45, 362, 443
TaqI	TCGA	3 cut(s)	369, 507, 660
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	2 cut(s)	69, 603
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	756
TseFI	GTSAC	3 cut(s)	302, 628, 775
TseI	GCWGC	2 cut(s)	86, 216
Tsp45I	GTSAC	3 cut(s)	302, 628, 775
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	183
TspMI	CCCGGG	1 cut(s)	142
Tth111I	GACNNNGTC	2 cut(s)	239, 824
VpaK11BI	GGWCC	3 cut(s)	532, 614, 788
XagI	CCTNNNNNAGG	1 cut(s)	623
XmaI	CCCGGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	525
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.