Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

10137133 .. 10137924

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTGCTTCCACAATGGCCCTCTCTTCCCCAACATTTGCCGGCAAGGCCGTCCAATTGGCCCCGGCTGAGATCTTCGGAAGTGGAAGAATCTCCATGAGGAAAACTGGGGGCAAGCCCGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACCTGACTGGTGAGTTCCCCGGTGATTACGGTTGGGACACTGCTGGGCTCTCAGCTGACCCAGAGACCTTTGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGGTGGGCCATGCTCGGAGCTCTCGGGTGCGTCTTCCCCGAGCTCTTGGCCCGCAATGGCGTCAAGTTTGGCGAGGCTGTGTGGTTCAAGGCTGGAGCCCAAATCTTCAGCGAGGGCGGGCTTGACTACTTGGGCAACCCTAGCTTGGTCCACGCGCAGAGTATCTTGGCCATCTGGGCAACCCAAGTCATCTTGATGGGTGCAGTTGAAGGATACAGAATTGCTGGAGGGCCACTAGGAGAGGTCGAAGACCCACTTTACCCAGGAGGAAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAATGGTAGGTTGGCCATGTTTTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCAGACCACCTTGCTGACCCAGTTAACAACAATGCCTGGTCCTACGCCACCAACTTTGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

264

Amino Acids

27.94

Weight (kDa)

5.04

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	63 - 230	6.3e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccII	CGCG	1 cut(s)	455
AciI	CCGC	2 cut(s)	352, 417
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	468, 651
AcuI	CTGAAG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	2 cut(s)	143, 164
AfiI	CCNNNNNNNGG	3 cut(s)	143, 179, 445
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	388, 509
AjnI	CCWGG	3 cut(s)	299, 562, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	9 cut(s)	195, 251, 283, 320, 343, 444, 573, 619, 634
AluI	AGCT	9 cut(s)	195, 251, 283, 320, 343, 444, 573, 619, 634
Alw21I	GWGCWC	4 cut(s)	285, 322, 345, 636
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	2 cut(s)	323, 338
ApaI	GGGCCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	457
AsuC2I	CCSGG	3 cut(s)	65, 216, 783
AsuHPI	GGTGA	3 cut(s)	218, 230, 637
AvaI	CYCGRG	2 cut(s)	323, 338
AvaII	GGWCC	3 cut(s)	448, 704, 759
BaeGI	GKGCMC	1 cut(s)	173
BalI	TGGCCA	2 cut(s)	470, 653
BanII	GRGCYC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
BbsI	GAAGAC	2 cut(s)	325, 555
Bbv12I	GWGCWC	4 cut(s)	285, 322, 345, 636
BccI	CCATC	2 cut(s)	479, 490
BceAI	ACGGC	2 cut(s)	35, 160
BciT130I	CCWGG	3 cut(s)	301, 564, 757
BciVI	GTATCC	1 cut(s)	506
BcnI	CCSGG	3 cut(s)	65, 216, 783
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	441, 536
BfrI	CTTAAG	1 cut(s)	620
BfuI	GTATCC	1 cut(s)	506
BglI	GCCNNNNNGGC	2 cut(s)	47, 476
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	6 cut(s)	65, 216, 301, 564, 757, 783
Bme18I	GGWCC	3 cut(s)	448, 704, 759
BmeT110I	CYCGRG	2 cut(s)	323, 338
BmiI	GGNNCC	4 cut(s)	63, 171, 397, 705
BmrFI	CCNGG	6 cut(s)	65, 216, 301, 564, 757, 783
BmrI	ACTGGG	2 cut(s)	117, 734
BmuI	ACTGGG	2 cut(s)	117, 734
BpiI	GAAGAC	2 cut(s)	325, 555
BpmI	CTGGAG	3 cut(s)	283, 414, 546
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	3 cut(s)	65, 216, 783
BsaHI	GRCGYC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	5 cut(s)	63, 137, 214, 562, 781
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 179, 445
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	112, 208, 740
Bse3DI	GCAATG	1 cut(s)	361
BseBI	CCWGG	3 cut(s)	301, 564, 757
BseDI	CCNNGG	5 cut(s)	63, 137, 214, 562, 781
BseLI	CCNNNNNNNGG	3 cut(s)	143, 179, 445
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	3 cut(s)	60, 261, 606
BseNI	ACTGG	3 cut(s)	112, 208, 740
BseSI	GKGCMC	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	455
BsiHKAI	GWGCWC	4 cut(s)	285, 322, 345, 636
BsiHKCI	CYCGRG	2 cut(s)	323, 338
BsiSI	CCGG	5 cut(s)	42, 65, 216, 696, 783
BslFI	GGGAC	2 cut(s)	245, 764
BslI	CCNNNNNNNGG	3 cut(s)	143, 179, 445
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	245, 764
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	2 cut(s)	323, 338
Bsp120I	GGGCCC	1 cut(s)	169
Bsp1286I	GDGCHC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
Bsp143I	GATC	2 cut(s)	72, 291
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	2 cut(s)	352, 417
BspCNI	CTCAG	3 cut(s)	61, 260, 607
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	4 cut(s)	63, 171, 397, 705
BspPI	GGATC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	112, 208, 740
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	5 cut(s)	63, 137, 214, 562, 781
BssMI	GATC	2 cut(s)	72, 291
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	3 cut(s)	301, 564, 757
Bst4CI	ACNGT	2 cut(s)	227, 278
Bst6I	CTCTTC	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	620
BstC8I	GCNNGC	5 cut(s)	43, 116, 185, 352, 419
BstDEI	CTNAG	3 cut(s)	69, 247, 615
BstDSI	CCRYGG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	75, 294
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	72, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 441, 476
BstNI	CCWGG	3 cut(s)	301, 564, 757
BstSCI	CCNGG	6 cut(s)	63, 214, 299, 562, 755, 781
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	455
BstV2I	GAAGAC	2 cut(s)	325, 555
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	506
BtgI	CCRYGG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	5 cut(s)	43, 116, 185, 352, 419
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	41
CseI	GACGC	2 cut(s)	319, 349
Csp6I	GTAC	2 cut(s)	142, 163
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviAII	CATG	4 cut(s)	97, 138, 310, 655
CviQI	GTAC	2 cut(s)	142, 163
DdeI	CTNAG	3 cut(s)	69, 247, 615
DpnI	GATC	2 cut(s)	74, 293
DpnII	GATC	2 cut(s)	72, 291
EaeI	YGGCCR	2 cut(s)	468, 651
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Ecl136II	GAGCTC	4 cut(s)	283, 320, 343, 634
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	448, 704, 759
Eco53kI	GAGCTC	4 cut(s)	283, 320, 343, 634
Eco57I	CTGAAG	1 cut(s)	391
Eco88I	CYCGRG	2 cut(s)	323, 338
EcoICRI	GAGCTC	4 cut(s)	283, 320, 343, 634
EcoRII	CCWGG	3 cut(s)	299, 562, 755
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	4 cut(s)	100, 141, 313, 658
FaiI	YATR	5 cut(s)	98, 139, 311, 656, 665
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	2 cut(s)	245, 764
FatI	CATG	4 cut(s)	96, 137, 309, 654
FauI	CCCGC	2 cut(s)	359, 410
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	441, 536
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	3 cut(s)	283, 414, 546
HapII	CCGG	5 cut(s)	42, 65, 216, 696, 783
HgaI	GACGC	2 cut(s)	319, 349
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	100, 141, 313, 658
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	2 cut(s)	90, 156
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	5 cut(s)	42, 65, 216, 696, 783
HphI	GGTGA	3 cut(s)	218, 230, 637
Hpy166II	GTNNAC	2 cut(s)	451, 745
Hpy188I	TCNGA	2 cut(s)	80, 317
Hpy188III	TCNNGA	3 cut(s)	129, 493, 637
Hpy8I	GTNNAC	2 cut(s)	451, 745
HpyAV	CCTTC	2 cut(s)	503, 622
HpyCH4III	ACNGT	2 cut(s)	227, 278
HpyCH4V	TGCA	2 cut(s)	503, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 441, 476
HpyF3I	CTNAG	3 cut(s)	69, 247, 615
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	100, 141, 313, 658
HspAI	GCGC	1 cut(s)	455
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	2 cut(s)	72, 291
LmnI	GCTCC	3 cut(s)	317, 395, 631
MaeI	CTAG	2 cut(s)	441, 536
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	2 cut(s)	74, 293
MboI	GATC	2 cut(s)	72, 291
MboII	GAAGA	6 cut(s)	18, 67, 99, 325, 397, 560
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
MlsI	TGGCCA	2 cut(s)	470, 653
MluCI	AATT	2 cut(s)	56, 519
MluNI	TGGCCA	2 cut(s)	470, 653
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	9 cut(s)	32, 93, 136, 367, 406, 521, 535, 560, 598
Mox20I	TGGCCA	2 cut(s)	470, 653
MroNI	GCCGGC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	470, 653
MseI	TTAA	2 cut(s)	621, 744
MslI	CAYNNNNRTG	1 cut(s)	494
Msp20I	TGGCCA	2 cut(s)	470, 653
MspA1I	CMGCKG	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	5 cut(s)	42, 65, 216, 696, 783
MspR9I	CCNGG	6 cut(s)	65, 216, 301, 564, 757, 783
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	3 cut(s)	301, 564, 757
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	47, 441, 476
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	3 cut(s)	65, 216, 783
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	72, 291
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	100, 141, 313, 658
NlaIV	GGNNCC	4 cut(s)	63, 171, 397, 705
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp124BI	GAGCTC	4 cut(s)	285, 322, 345, 636
Psp6I	CCWGG	3 cut(s)	299, 562, 755
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	3 cut(s)	299, 562, 755
PspN4I	GGNNCC	4 cut(s)	63, 171, 397, 705
PspOMI	GGGCCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	143, 164
RsaNI	GTAC	2 cut(s)	142, 163
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	4 cut(s)	285, 322, 345, 636
SaqAI	TTAA	2 cut(s)	621, 744
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	72, 291
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	6 cut(s)	65, 216, 301, 564, 757, 783
SduI	GDGCHC	8 cut(s)	173, 189, 246, 285, 322, 345, 400, 636
SinI	GGWCC	3 cut(s)	448, 704, 759
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	620, 635
SmoI	CTYRAG	2 cut(s)	620, 635
Sse9I	AATT	2 cut(s)	56, 519
SsiI	CCGC	2 cut(s)	352, 417
SspMI	CTAG	2 cut(s)	441, 536
SstI	GAGCTC	4 cut(s)	285, 322, 345, 636
StyD4I	CCNGG	6 cut(s)	63, 214, 299, 562, 755, 781
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	227, 278
TaqI	TCGA	2 cut(s)	285, 546
TasI	AATT	2 cut(s)	56, 519
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	621, 744
Tru9I	TTAA	2 cut(s)	621, 744
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	3 cut(s)	448, 704, 759
XspI	CTAG	2 cut(s)	441, 536
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.