Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

14522524 .. 14523568

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAGCCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTCGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009743 GO:0009746 GO:0009750 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010033 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034284 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048046 GO:0050896 GO:0055035 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

265

Amino Acids

28.05

Weight (kDa)

5.28

Isoelectric Point (pI)

21.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	64 - 232	1.4e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	63, 84, 240, 252, 380
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	2 cut(s)	85, 738
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	2 cut(s)	146, 167
AfiI	CCNNNNNNNGG	4 cut(s)	146, 182, 273, 448
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	391, 512, 628, 689
AjnI	CCWGG	2 cut(s)	272, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	7 cut(s)	198, 286, 346, 447, 506, 579, 640
AluI	AGCT	7 cut(s)	198, 286, 346, 447, 506, 579, 640
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	3 cut(s)	193, 442, 608
AoxI	GGCC	6 cut(s)	85, 309, 393, 592, 738, 765
ApeKI	GCWGC	3 cut(s)	135, 330, 576
AsiGI	ACCGGT	1 cut(s)	206
AspA2I	CCTAGG	1 cut(s)	325
AspS9I	GGNCC	8 cut(s)	125, 173, 309, 451, 536, 592, 710, 765
AsuC2I	CCSGG	2 cut(s)	219, 789
AsuHPI	GGTGA	4 cut(s)	221, 233, 643, 691
AvaI	CYCGRG	3 cut(s)	193, 442, 608
AvaII	GGWCC	5 cut(s)	125, 173, 451, 536, 710
AvrII	CCTAGG	1 cut(s)	325
BanII	GRGCYC	3 cut(s)	192, 325, 642
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	3 cut(s)	147, 317, 588
BccI	CCATC	5 cut(s)	136, 225, 300, 527, 701
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	274, 570
BcnI	CCSGG	2 cut(s)	219, 789
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	3 cut(s)	287, 326, 354
BfmI	CTRYAG	1 cut(s)	517
BglI	GCCNNNNNGGC	2 cut(s)	47, 479
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	5 cut(s)	63, 85, 136, 331, 577
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	5 cut(s)	64, 86, 137, 332, 578
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	4 cut(s)	219, 274, 570, 789
Bme18I	GGWCC	5 cut(s)	125, 173, 451, 536, 710
BmeT110I	CYCGRG	3 cut(s)	193, 442, 608
BmgT120I	GGNCC	8 cut(s)	125, 173, 309, 451, 536, 592, 710, 765
BmiI	GGNNCC	5 cut(s)	126, 174, 278, 322, 711
BmrFI	CCNGG	4 cut(s)	219, 274, 570, 789
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	74, 474
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	471, 626
BpuMI	CCSGG	2 cut(s)	219, 789
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	8 cut(s)	15, 76, 140, 217, 325, 568, 609, 787
BsaWI	WCCGGW	2 cut(s)	206, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 182, 273, 448
Bse118I	RCCGGY	2 cut(s)	206, 395
Bse1I	ACTGG	1 cut(s)	746
BseBI	CCWGG	2 cut(s)	274, 570
BseDI	CCNNGG	8 cut(s)	15, 76, 140, 217, 325, 568, 609, 787
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	4 cut(s)	146, 182, 273, 448
BseMII	CTCAG	2 cut(s)	333, 473
BseNI	ACTGG	1 cut(s)	746
BseX3I	CGGCCG	1 cut(s)	85
BseXI	GCAGC	3 cut(s)	147, 317, 588
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	6 cut(s)	87, 311, 395, 594, 740, 767
BshTI	ACCGGT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	3 cut(s)	193, 442, 608
BsiSI	CCGG	8 cut(s)	42, 183, 207, 219, 396, 528, 702, 789
BslFI	GGGAC	3 cut(s)	248, 723, 770
BslI	CCNNNNNNNGG	4 cut(s)	146, 182, 273, 448
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	3 cut(s)	248, 723, 770
BsnI	GGCC	6 cut(s)	87, 311, 395, 594, 740, 767
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	3 cut(s)	193, 442, 608
Bsp1286I	GDGCHC	3 cut(s)	192, 325, 642
Bsp143I	GATC	2 cut(s)	149, 405
Bsp19I	CCATGG	2 cut(s)	15, 140
BspACI	CCGC	5 cut(s)	63, 84, 240, 252, 380
BspANI	GGCC	6 cut(s)	87, 311, 395, 594, 740, 767
BspCNI	CTCAG	2 cut(s)	334, 472
BspLI	GGNNCC	5 cut(s)	126, 174, 278, 322, 711
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	206, 395
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	2 cut(s)	206, 395
BssECI	CCNNGG	8 cut(s)	15, 76, 140, 217, 325, 568, 609, 787
BssMI	GATC	2 cut(s)	149, 405
BssT1I	CCWWGG	3 cut(s)	15, 140, 325
Bst2UI	CCWGG	2 cut(s)	274, 570
Bst4CI	ACNGT	2 cut(s)	109, 281
BstC8I	GCNNGC	2 cut(s)	60, 188
BstDEI	CTNAG	3 cut(s)	342, 459, 469
BstDSI	CCRYGG	2 cut(s)	15, 140
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	2 cut(s)	152, 408
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	149, 405
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 444, 479
BstNI	CCWGG	2 cut(s)	274, 570
BstSCI	CCNGG	4 cut(s)	217, 272, 568, 787
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	147, 317, 588
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	149, 405
BstYI	RGATCY	2 cut(s)	149, 405
BstZI	CGGCCG	1 cut(s)	85
BsuRI	GGCC	6 cut(s)	87, 311, 395, 594, 740, 767
BtgI	CCRYGG	2 cut(s)	15, 140
BtsCI	GGATG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	60, 188
Cfr10I	RCCGGY	2 cut(s)	206, 395
Cfr13I	GGNCC	8 cut(s)	125, 173, 309, 451, 536, 592, 710, 765
Csp6I	GTAC	2 cut(s)	145, 166
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	5 cut(s)	16, 97, 141, 313, 499
CviQI	GTAC	2 cut(s)	145, 166
DdeI	CTNAG	3 cut(s)	342, 459, 469
DpnI	GATC	2 cut(s)	151, 407
DpnII	GATC	2 cut(s)	149, 405
EaeI	YGGCCR	2 cut(s)	85, 738
EagI	CGGCCG	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	640
EclXI	CGGCCG	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	15, 140, 325
Eco24I	GRGCYC	3 cut(s)	192, 325, 642
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	5 cut(s)	125, 173, 451, 536, 710
Eco52I	CGGCCG	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	394
Eco88I	CYCGRG	3 cut(s)	193, 442, 608
EcoICRI	GAGCTC	1 cut(s)	640
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	272, 568
EcoT14I	CCWWGG	3 cut(s)	15, 140, 325
EcoT38I	GRGCYC	3 cut(s)	192, 325, 642
ErhI	CCWWGG	3 cut(s)	15, 140, 325
FaeI	CATG	5 cut(s)	19, 100, 144, 316, 502
FaiI	YATR	7 cut(s)	17, 98, 142, 314, 500, 662, 671
FaqI	GGGAC	3 cut(s)	248, 723, 770
FatI	CATG	5 cut(s)	15, 96, 140, 312, 498
Fnu4HI	GCNGC	5 cut(s)	63, 85, 136, 331, 577
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	3 cut(s)	192, 325, 642
Fsp4HI	GCNGC	5 cut(s)	63, 85, 136, 331, 577
FspBI	CTAG	3 cut(s)	287, 326, 354
GluI	GCNGC	5 cut(s)	63, 85, 136, 331, 577
HaeIII	GGCC	6 cut(s)	87, 311, 395, 594, 740, 767
HapII	CCGG	8 cut(s)	42, 183, 207, 219, 396, 528, 702, 789
Hin1II	CATG	5 cut(s)	19, 100, 144, 316, 502
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	159, 522, 678
HpaII	CCGG	8 cut(s)	42, 183, 207, 219, 396, 528, 702, 789
HphI	GGTGA	4 cut(s)	221, 233, 643, 691
Hpy166II	GTNNAC	3 cut(s)	401, 454, 751
Hpy188I	TCNGA	6 cut(s)	70, 80, 154, 320, 374, 462
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	3 cut(s)	401, 454, 751
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	7 cut(s)	46, 277, 506, 622, 628, 645, 778
HpyCH4III	ACNGT	2 cut(s)	109, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 444, 479
HpyF3I	CTNAG	3 cut(s)	342, 459, 469
Hsp92II	CATG	5 cut(s)	19, 100, 144, 316, 502
Kzo9I	GATC	2 cut(s)	149, 405
LmnI	GCTCC	3 cut(s)	320, 503, 637
Lsp1109I	GCAGC	3 cut(s)	147, 317, 588
LweI	GCATC	2 cut(s)	74, 474
MaeI	CTAG	3 cut(s)	287, 326, 354
MaeIII	GTNAC	3 cut(s)	91, 221, 697
MalI	GATC	2 cut(s)	151, 407
MboI	GATC	2 cut(s)	149, 405
MboII	GAAGA	3 cut(s)	115, 400, 673
MflI	RGATCY	2 cut(s)	149, 405
MhlI	GDGCHC	3 cut(s)	192, 325, 642
MlyI	GAGTC	2 cut(s)	168, 531
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	8 cut(s)	42, 183, 207, 219, 396, 528, 702, 789
MspR9I	CCNGG	4 cut(s)	219, 274, 570, 789
MvaI	CCWGG	2 cut(s)	274, 570
MwoI	GCNNNNNNNGC	3 cut(s)	47, 444, 479
NciI	CCSGG	2 cut(s)	219, 789
NcoI	CCATGG	2 cut(s)	15, 140
NdeII	GATC	2 cut(s)	149, 405
NlaIII	CATG	5 cut(s)	19, 100, 144, 316, 502
NlaIV	GGNNCC	5 cut(s)	126, 174, 278, 322, 711
NmuCI	GTSAC	3 cut(s)	91, 221, 697
PfeI	GAWTC	1 cut(s)	678
PflFI	GACNNNGTC	2 cut(s)	158, 746
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	64, 86, 137, 332, 578
PleI	GAGTC	2 cut(s)	167, 530
PpsI	GAGTC	2 cut(s)	167, 530
PpuMI	RGGWCCY	1 cut(s)	710
Psp124BI	GAGCTC	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	272, 568
PspGI	CCWGG	2 cut(s)	272, 568
PspN4I	GGNNCC	5 cut(s)	126, 174, 278, 322, 711
PspPI	GGNCC	8 cut(s)	125, 173, 309, 451, 536, 592, 710, 765
PspPPI	RGGWCCY	1 cut(s)	710
PsuI	RGATCY	2 cut(s)	149, 405
PsyI	GACNNNGTC	2 cut(s)	158, 746
RsaI	GTAC	2 cut(s)	146, 167
RsaNI	GTAC	2 cut(s)	145, 166
SacI	GAGCTC	1 cut(s)	642
SatI	GCNGC	5 cut(s)	63, 85, 136, 331, 577
Sau3AI	GATC	2 cut(s)	149, 405
Sau96I	GGNCC	8 cut(s)	125, 173, 309, 451, 536, 592, 710, 765
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	168, 531
ScrFI	CCNGG	4 cut(s)	219, 274, 570, 789
SduI	GDGCHC	3 cut(s)	192, 325, 642
SfaNI	GCATC	2 cut(s)	74, 474
SfcI	CTRYAG	1 cut(s)	517
SinI	GGWCC	5 cut(s)	125, 173, 451, 536, 710
SmlI	CTYRAG	2 cut(s)	486, 641
SmoI	CTYRAG	2 cut(s)	486, 641
SsiI	CCGC	5 cut(s)	63, 84, 240, 252, 380
SspMI	CTAG	3 cut(s)	287, 326, 354
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	4 cut(s)	217, 272, 568, 787
StyI	CCWWGG	3 cut(s)	15, 140, 325
TaaI	ACNGT	2 cut(s)	109, 281
TaqI	TCGA	1 cut(s)	582
TaqII	GACCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	2 cut(s)	65, 87
TfiI	GAWTC	1 cut(s)	678
TseFI	GTSAC	3 cut(s)	91, 221, 697
TseI	GCWGC	3 cut(s)	135, 330, 576
Tsp45I	GTSAC	3 cut(s)	91, 221, 697
TspGWI	ACGGA	5 cut(s)	162, 243, 375, 432, 663
Tth111I	GACNNNGTC	2 cut(s)	158, 746
VpaK11BI	GGWCC	5 cut(s)	125, 173, 451, 536, 710
XagI	CCTNNNNNAGG	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	325
XspI	CTAG	3 cut(s)	287, 326, 354
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.