Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

35874032 .. 35874907

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1265300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAGCTTCCATGGCTCTCTCTTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTTGGAAACGGAAGAGTGTCCATGAGGAAAACTGCTACCAAAAAAGTCTCCTCTGGCAGCCCATGGTACGGCCCTGACAGAGTCAAGTACTTGGGGCCATTCTCCGGTGAGCCCCCAAGCTACCTCACCGGCGAGTTCCCCGGTGACTACGGCTGGGACACCGCCGGACTCTCAGCTGACCCAGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTCGGAGCTCTTGGATGCGTTTTCCCAGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAAGCCGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACCCAAGTGGTGTTGATGGGCGCAGTTGAGGGATACAGAATTGCCGGCGGCCCCCTCGGAGAGGTGACCGACCCACTTTACCCCGGCGGAAGCTTCGACCCATTGGGTCTTGCCGACGACCCAGAAGCTTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTCGGATTCTTTGTGCAGGCCATTGTCACCGGTAAGGGACCATTGGAGAACCTTGCCGACCACCTTGCGGACCCAGTCGCCAACAATGCCTGGAACTATGCCACAAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

265

Amino Acids

28.07

Weight (kDa)

5.29

Isoelectric Point (pI)

21.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	64 - 231	8.1e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	240, 355, 420, 531, 570, 737
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	2 cut(s)	471, 654
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	2 cut(s)	146, 167
AfiI	CCNNNNNNNGG	5 cut(s)	146, 182, 448, 544, 736
AgeI	ACCGGT	1 cut(s)	698
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	758
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
Alw21I	GWGCWC	5 cut(s)	288, 325, 348, 624, 639
Alw26I	GTCTC	3 cut(s)	130, 257, 428
AlwI	GGATC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	8 cut(s)	148, 173, 309, 393, 471, 532, 654, 687
ApeKI	GCWGC	2 cut(s)	5, 135
AsiGI	ACCGGT	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	7 cut(s)	149, 173, 309, 451, 533, 707, 739
AsuC2I	CCSGG	5 cut(s)	62, 63, 219, 567, 786
AsuHPI	GGTGA	6 cut(s)	196, 197, 233, 559, 640, 688
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	3 cut(s)	451, 707, 739
BalI	TGGCCA	2 cut(s)	473, 656
BanII	GRGCYC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
Bbv12I	GWGCWC	5 cut(s)	288, 325, 348, 624, 639
BbvI	GCAGC	2 cut(s)	17, 147
BccI	CCATC	3 cut(s)	300, 482, 493
BceAI	ACGGC	4 cut(s)	32, 163, 244, 365
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	760
BciVI	GTATCC	1 cut(s)	509
BcnI	CCSGG	5 cut(s)	62, 63, 219, 567, 786
BcoDI	GTCTC	3 cut(s)	130, 257, 428
BfaI	CTAG	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	509
BglI	GCCNNNNNGGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	3 cut(s)	6, 136, 532
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	3 cut(s)	7, 137, 533
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	62, 63, 219, 567, 760, 786
Bme18I	GGWCC	3 cut(s)	451, 707, 739
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	7 cut(s)	149, 173, 309, 451, 533, 707, 739
BmiI	GGNNCC	6 cut(s)	67, 174, 400, 535, 708, 741
BmrFI	CCNGG	6 cut(s)	62, 63, 219, 567, 760, 786
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	2 cut(s)	320, 474
BmuI	ACTGGG	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	286
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	2 cut(s)	608, 623
BpuMI	CCSGG	5 cut(s)	62, 63, 219, 567, 786
BsaI	GGTCTC	2 cut(s)	257, 428
BsaJI	CCNNGG	7 cut(s)	12, 60, 61, 140, 217, 538, 565
BsaWI	WCCGGW	2 cut(s)	182, 698
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 182, 448, 544, 736
Bse118I	RCCGGY	4 cut(s)	38, 206, 527, 698
Bse1I	ACTGG	1 cut(s)	743
BseBI	CCWGG	1 cut(s)	760
BseDI	CCNNGG	7 cut(s)	12, 60, 61, 140, 217, 538, 565
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	5 cut(s)	146, 182, 448, 544, 736
BseMII	CTCAG	2 cut(s)	264, 609
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	17, 147
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	8 cut(s)	150, 175, 311, 395, 473, 534, 656, 689
BshTI	ACCGGT	1 cut(s)	698
BsiHKAI	GWGCWC	5 cut(s)	288, 325, 348, 624, 639
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	3 cut(s)	248, 337, 720
BslI	CCNNNNNNNGG	5 cut(s)	146, 182, 448, 544, 736
BsmAI	GTCTC	3 cut(s)	130, 257, 428
BsmFI	GGGAC	3 cut(s)	248, 337, 720
BsnI	GGCC	8 cut(s)	150, 175, 311, 395, 473, 534, 656, 689
Bso31I	GGTCTC	2 cut(s)	257, 428
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
Bsp143I	GATC	2 cut(s)	294, 405
Bsp1720I	GCTNAGC	1 cut(s)	618
Bsp19I	CCATGG	2 cut(s)	12, 140
BspACI	CCGC	6 cut(s)	240, 355, 420, 531, 570, 737
BspANI	GGCC	8 cut(s)	150, 175, 311, 395, 473, 534, 656, 689
BspCNI	CTCAG	2 cut(s)	263, 610
BspLI	GGNNCC	6 cut(s)	67, 174, 400, 535, 708, 741
BspPI	GGATC	1 cut(s)	289
BspTNI	GGTCTC	2 cut(s)	257, 428
BsrFI	RCCGGY	4 cut(s)	38, 206, 527, 698
BsrI	ACTGG	1 cut(s)	743
BssAI	RCCGGY	4 cut(s)	38, 206, 527, 698
BssECI	CCNNGG	7 cut(s)	12, 60, 61, 140, 217, 538, 565
BssMI	GATC	2 cut(s)	294, 405
BssT1I	CCWWGG	2 cut(s)	12, 140
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	2 cut(s)	281, 362
Bst6I	CTCTTC	2 cut(s)	28, 85
BstC8I	GCNNGC	3 cut(s)	40, 529, 687
BstDEI	CTNAG	2 cut(s)	250, 618
BstDSI	CCRYGG	2 cut(s)	12, 140
BstEII	GGTNACC	1 cut(s)	547
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	2 cut(s)	297, 408
BstMAI	GTCTC	3 cut(s)	130, 257, 428
BstMBI	GATC	2 cut(s)	294, 405
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 44, 479, 755
BstNI	CCWGG	1 cut(s)	760
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	6 cut(s)	60, 61, 217, 565, 758, 784
BstV1I	GCAGC	2 cut(s)	17, 147
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	8 cut(s)	150, 175, 311, 395, 473, 534, 656, 689
BtgI	CCRYGG	2 cut(s)	12, 140
BtsCI	GGATG	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	40, 529, 687
CfoI	GCGC	1 cut(s)	506
Cfr10I	RCCGGY	4 cut(s)	38, 206, 527, 698
Cfr13I	GGNCC	7 cut(s)	149, 173, 309, 451, 533, 707, 739
Cfr9I	CCCGGG	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	145, 166
CspAI	ACCGGT	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	7 cut(s)	13, 100, 141, 313, 455, 658, 667
CviQI	GTAC	2 cut(s)	145, 166
DdeI	CTNAG	2 cut(s)	250, 618
DpnI	GATC	2 cut(s)	296, 407
DpnII	GATC	2 cut(s)	294, 405
EaeI	YGGCCR	2 cut(s)	471, 654
Eam1104I	CTCTTC	2 cut(s)	28, 85
EarI	CTCTTC	2 cut(s)	28, 85
EciI	GGCGGA	1 cut(s)	585
Ecl136II	GAGCTC	5 cut(s)	286, 323, 346, 622, 637
Eco130I	CCWWGG	2 cut(s)	12, 140
Eco24I	GRGCYC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
Eco31I	GGTCTC	2 cut(s)	257, 428
Eco47I	GGWCC	3 cut(s)	451, 707, 739
Eco53kI	GAGCTC	5 cut(s)	286, 323, 346, 622, 637
Eco57I	CTGAAG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	547
EcoICRI	GAGCTC	5 cut(s)	286, 323, 346, 622, 637
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	758
EcoT14I	CCWWGG	2 cut(s)	12, 140
EcoT38I	GRGCYC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
ErhI	CCWWGG	2 cut(s)	12, 140
FaeI	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
FaiI	YATR	8 cut(s)	14, 101, 142, 314, 456, 659, 668, 768
FaqI	GGGAC	3 cut(s)	248, 337, 720
FatI	CATG	7 cut(s)	12, 99, 140, 312, 454, 657, 666
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	6, 136, 532
FokI	GGATG	1 cut(s)	342
FriOI	GRGCYC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
Fsp4HI	GCNGC	3 cut(s)	6, 136, 532
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	3 cut(s)	6, 136, 532
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	8 cut(s)	150, 175, 311, 395, 473, 534, 656, 689
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	2 cut(s)	574, 609
HinfI	GANTC	3 cut(s)	159, 246, 675
HphI	GGTGA	6 cut(s)	196, 197, 233, 559, 640, 688
Hpy188I	TCNGA	3 cut(s)	320, 542, 674
Hpy188III	TCNNGA	3 cut(s)	303, 425, 640
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	4 cut(s)	43, 277, 625, 642
HpyCH4III	ACNGT	2 cut(s)	281, 362
HpyCH4V	TGCA	3 cut(s)	52, 458, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 44, 479, 755
HpyF3I	CTNAG	2 cut(s)	250, 618
Hsp92II	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
HspAI	GCGC	1 cut(s)	504
KroI	GCCGGC	2 cut(s)	38, 527
KroNI	GCCGGC	2 cut(s)	40, 529
Kzo9I	GATC	2 cut(s)	294, 405
LmnI	GCTCC	4 cut(s)	65, 320, 398, 634
Lsp1109I	GCAGC	2 cut(s)	17, 147
LweI	GCATC	2 cut(s)	320, 474
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	221, 547, 694
MalI	GATC	2 cut(s)	296, 407
MboI	GATC	2 cut(s)	294, 405
MboII	GAAGA	3 cut(s)	15, 102, 400
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
MlsI	TGGCCA	2 cut(s)	473, 656
MluCI	AATT	1 cut(s)	522
MluNI	TGGCCA	2 cut(s)	473, 656
MlyI	GAGTC	2 cut(s)	168, 240
MnlI	CCTC	7 cut(s)	96, 139, 212, 409, 505, 538, 548
Mox20I	TGGCCA	2 cut(s)	473, 656
MroNI	GCCGGC	2 cut(s)	38, 527
MscI	TGGCCA	2 cut(s)	473, 656
Msp20I	TGGCCA	2 cut(s)	473, 656
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	6 cut(s)	62, 63, 219, 567, 760, 786
MvaI	CCWGG	1 cut(s)	760
MwoI	GCNNNNNNNGC	4 cut(s)	14, 44, 479, 755
NaeI	GCCGGC	2 cut(s)	40, 529
NciI	CCSGG	5 cut(s)	62, 63, 219, 567, 786
NcoI	CCATGG	2 cut(s)	12, 140
NdeII	GATC	2 cut(s)	294, 405
NgoMIV	GCCGGC	2 cut(s)	38, 527
NlaIII	CATG	7 cut(s)	16, 103, 144, 316, 458, 661, 670
NlaIV	GGNNCC	6 cut(s)	67, 174, 400, 535, 708, 741
NmuCI	GTSAC	3 cut(s)	221, 547, 694
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	2 cut(s)	40, 529
PfeI	GAWTC	1 cut(s)	675
PflFI	GACNNNGTC	2 cut(s)	158, 743
PfoI	TCCNGGA	1 cut(s)	784
PinAI	ACCGGT	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	7, 137, 533
PleI	GAGTC	2 cut(s)	167, 240
PpsI	GAGTC	2 cut(s)	167, 240
Psp124BI	GAGCTC	5 cut(s)	288, 325, 348, 624, 639
Psp6I	CCWGG	1 cut(s)	758
PspEI	GGTNACC	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	6 cut(s)	67, 174, 400, 535, 708, 741
PspPI	GGNCC	7 cut(s)	149, 173, 309, 451, 533, 707, 739
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	2 cut(s)	158, 743
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	146, 167
RsaNI	GTAC	2 cut(s)	145, 166
SacI	GAGCTC	5 cut(s)	288, 325, 348, 624, 639
SatI	GCNGC	3 cut(s)	6, 136, 532
Sau3AI	GATC	2 cut(s)	294, 405
Sau96I	GGNCC	7 cut(s)	149, 173, 309, 451, 533, 707, 739
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	168, 240
ScrFI	CCNGG	6 cut(s)	62, 63, 219, 567, 760, 786
SduI	GDGCHC	7 cut(s)	192, 288, 325, 348, 403, 624, 639
SfaNI	GCATC	2 cut(s)	320, 474
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	3 cut(s)	451, 707, 739
SmaI	CCCGGG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	623, 638
SmoI	CTYRAG	2 cut(s)	623, 638
Sse9I	AATT	1 cut(s)	522
SsiI	CCGC	6 cut(s)	240, 355, 420, 531, 570, 737
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	5 cut(s)	288, 325, 348, 624, 639
StyD4I	CCNGG	6 cut(s)	60, 61, 217, 565, 758, 784
StyI	CCWWGG	2 cut(s)	12, 140
TaaI	ACNGT	2 cut(s)	281, 362
TaqI	TCGA	3 cut(s)	288, 426, 579
TaqII	GACCGA	1 cut(s)	566
TasI	AATT	1 cut(s)	522
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	675
TseFI	GTSAC	3 cut(s)	221, 547, 694
TseI	GCWGC	2 cut(s)	5, 135
Tsp45I	GTSAC	3 cut(s)	221, 547, 694
TspGWI	ACGGA	1 cut(s)	102
TspMI	CCCGGG	1 cut(s)	61
Tth111I	GACNNNGTC	2 cut(s)	158, 743
VpaK11BI	GGWCC	3 cut(s)	451, 707, 739
XagI	CCTNNNNNAGG	1 cut(s)	542
XmaI	CCCGGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	444
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.