Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

85181970 .. 85182758

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGCTTCCATGGCTCTCTCCTCCCCAACATTCGCCGGCAAGGCCGTACAACTTGCCCCTGCCGAGGTTTTTGGAACCGGAAGGATCTCCATGAGGAAAACCGCGGGCAAGTCTGTTTCCTCTGGAAGCCCATGGTATGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGTGAGCCCCCAAGCTACCTCACTGGTGAGTTTCCCGGTGACTACGGTTGGGACACTGCTGGGCTCTCAGCCGACCCAGAAACCTTTGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGGTGGGCCATGCTTGGTGCTCTCGGGTGCGTCTTCCCCGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGCGAGGCTGTGTGGTTCAAGGCCGGAGCCCAAATCTTCAGCGAGGGCGGGCTCGACTACTTGGGCAATCCTAGCTTGGTCCACGCGCAAAGCATCTTGGCCATCTGGGCCACCCAAGTCATCTTGATGGGCGCAGTTGAGGGATACAGAATTGCTGGAGGCCCACTTGGAGAAGTTGAAGACCCACTTTACCCAGGAGGCAGCTTTGACCCATTGGGTCTTGCTGATGACCCAGAAGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGCTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGACCATTGGAGAACCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCCTGGTCATACGCCACCAACTTTGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

262

Amino Acids

27.84

Weight (kDa)

5.04

Isoelectric Point (pI)

22.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	62 - 229	6.2e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	140, 176
AccII	CGCG	2 cut(s)	107, 452
AciI	CCGC	4 cut(s)	105, 107, 349, 414
AclWI	GGATC	2 cut(s)	95, 283
AcoI	YGGCCR	2 cut(s)	465, 648
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	2 cut(s)	51, 161
AfiI	CCNNNNNNNGG	3 cut(s)	67, 140, 176
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	2 cut(s)	385, 545
AjnI	CCWGG	3 cut(s)	296, 559, 752
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	8 cut(s)	192, 280, 340, 441, 570, 605, 616, 631
AluI	AGCT	8 cut(s)	192, 280, 340, 441, 570, 605, 616, 631
Alw21I	GWGCWC	4 cut(s)	282, 319, 342, 633
AlwI	GGATC	2 cut(s)	95, 283
Ama87I	CYCGRG	2 cut(s)	320, 335
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	5, 567
AspLEI	GCGC	2 cut(s)	454, 500
AspS9I	GGNCC	9 cut(s)	143, 166, 167, 303, 346, 445, 474, 527, 701
AsuC2I	CCSGG	2 cut(s)	213, 780
AsuHPI	GGTGA	4 cut(s)	191, 215, 227, 634
AvaI	CYCGRG	2 cut(s)	320, 335
AvaII	GGWCC	2 cut(s)	445, 701
BaeGI	GKGCMC	1 cut(s)	170
BalI	TGGCCA	2 cut(s)	467, 650
BanII	GRGCYC	8 cut(s)	170, 186, 243, 282, 342, 397, 420, 633
BbsI	GAAGAC	2 cut(s)	322, 552
Bbv12I	GWGCWC	4 cut(s)	282, 319, 342, 633
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	2 cut(s)	476, 487
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	3 cut(s)	298, 561, 754
BciVI	GTATCC	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	213, 780
BfaI	CTAG	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	503
BglI	GCCNNNNNGGC	2 cut(s)	44, 473
BisI	GCNGC	2 cut(s)	6, 568
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	2 cut(s)	7, 569
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	5 cut(s)	213, 298, 561, 754, 780
Bme18I	GGWCC	2 cut(s)	445, 701
BmeT110I	CYCGRG	2 cut(s)	320, 335
BmgT120I	GGNCC	9 cut(s)	143, 166, 167, 303, 346, 445, 474, 527, 701
BmiI	GGNNCC	4 cut(s)	79, 168, 394, 702
BmrFI	CCNGG	5 cut(s)	213, 298, 561, 754, 780
BmrI	ACTGGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	731
BpiI	GAAGAC	2 cut(s)	322, 552
BpmI	CTGGAG	2 cut(s)	280, 543
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	2 cut(s)	213, 780
BsaJI	CCNNGG	6 cut(s)	12, 66, 105, 134, 559, 778
BsaWI	WCCGGW	2 cut(s)	80, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 140, 176
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	205, 737
BseBI	CCWGG	3 cut(s)	298, 561, 754
BseDI	CCNNGG	6 cut(s)	12, 66, 105, 134, 559, 778
BseLI	CCNNNNNNNGG	3 cut(s)	67, 140, 176
BseMII	CTCAG	2 cut(s)	258, 603
BseNI	ACTGG	2 cut(s)	205, 737
BseRI	GAGGAG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	579
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	2 cut(s)	107, 452
BsiHKAI	GWGCWC	4 cut(s)	282, 319, 342, 633
BsiHKCI	CYCGRG	2 cut(s)	320, 335
BsiSI	CCGG	6 cut(s)	39, 81, 213, 390, 693, 780
BslFI	GGGAC	3 cut(s)	242, 714, 761
BslI	CCNNNNNNNGG	3 cut(s)	67, 140, 176
BsmFI	GGGAC	3 cut(s)	242, 714, 761
BsoBI	CYCGRG	2 cut(s)	320, 335
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	9 cut(s)	170, 186, 243, 282, 319, 342, 397, 420, 633
Bsp143I	GATC	2 cut(s)	87, 288
Bsp1720I	GCTNAGC	1 cut(s)	612
Bsp19I	CCATGG	2 cut(s)	12, 134
BspACI	CCGC	4 cut(s)	105, 107, 349, 414
BspCNI	CTCAG	2 cut(s)	257, 604
BspFNI	CGCG	2 cut(s)	107, 452
BspLI	GGNNCC	4 cut(s)	79, 168, 394, 702
BspPI	GGATC	2 cut(s)	95, 283
BspTI	CTTAAG	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	2 cut(s)	205, 737
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	6 cut(s)	12, 66, 105, 134, 559, 778
BssMI	GATC	2 cut(s)	87, 288
BssT1I	CCWWGG	2 cut(s)	12, 134
Bst2UI	CCWGG	3 cut(s)	298, 561, 754
Bst4CI	ACNGT	2 cut(s)	224, 275
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	4 cut(s)	40, 109, 349, 416
BstDEI	CTNAG	2 cut(s)	244, 612
BstDSI	CCRYGG	3 cut(s)	12, 105, 134
BstFNI	CGCG	2 cut(s)	107, 452
BstHHI	GCGC	2 cut(s)	454, 500
BstKTI	GATC	2 cut(s)	90, 291
BstMBI	GATC	2 cut(s)	87, 288
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 44, 438, 473
BstNI	CCWGG	3 cut(s)	298, 561, 754
BstSCI	CCNGG	5 cut(s)	211, 296, 559, 752, 778
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	2 cut(s)	107, 452
BstV1I	GCAGC	1 cut(s)	579
BstV2I	GAAGAC	2 cut(s)	322, 552
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	503
BtgI	CCRYGG	3 cut(s)	12, 105, 134
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	198, 231
Cac8I	GCNNGC	4 cut(s)	40, 109, 349, 416
CfoI	GCGC	2 cut(s)	454, 500
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	9 cut(s)	143, 166, 167, 303, 346, 445, 474, 527, 701
Cfr42I	CCGCGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	50, 160
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	6 cut(s)	13, 94, 135, 307, 652, 661
CviQI	GTAC	2 cut(s)	50, 160
DdeI	CTNAG	2 cut(s)	244, 612
DpnI	GATC	2 cut(s)	89, 290
DpnII	GATC	2 cut(s)	87, 288
EaeI	YGGCCR	2 cut(s)	465, 648
Ecl136II	GAGCTC	3 cut(s)	280, 340, 631
Eco130I	CCWWGG	2 cut(s)	12, 134
Eco24I	GRGCYC	8 cut(s)	170, 186, 243, 282, 342, 397, 420, 633
Eco47I	GGWCC	2 cut(s)	445, 701
Eco53kI	GAGCTC	3 cut(s)	280, 340, 631
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	2 cut(s)	320, 335
EcoICRI	GAGCTC	3 cut(s)	280, 340, 631
EcoRII	CCWGG	3 cut(s)	296, 559, 752
EcoT14I	CCWWGG	2 cut(s)	12, 134
EcoT38I	GRGCYC	8 cut(s)	170, 186, 243, 282, 342, 397, 420, 633
ErhI	CCWWGG	2 cut(s)	12, 134
FaeI	CATG	6 cut(s)	16, 97, 138, 310, 655, 664
FaiI	YATR	8 cut(s)	14, 95, 136, 141, 308, 653, 662, 760
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	3 cut(s)	242, 714, 761
FatI	CATG	6 cut(s)	12, 93, 134, 306, 651, 660
FauI	CCCGC	3 cut(s)	100, 356, 407
Fnu4HI	GCNGC	2 cut(s)	6, 568
FriOI	GRGCYC	8 cut(s)	170, 186, 243, 282, 342, 397, 420, 633
Fsp4HI	GCNGC	2 cut(s)	6, 568
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	2 cut(s)	453, 499
GluI	GCNGC	2 cut(s)	6, 568
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	2 cut(s)	280, 543
HapII	CCGG	6 cut(s)	39, 81, 213, 390, 693, 780
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	2 cut(s)	454, 500
Hin1II	CATG	6 cut(s)	16, 97, 138, 310, 655, 664
Hin6I	GCGC	2 cut(s)	452, 498
HinP1I	GCGC	2 cut(s)	452, 498
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	2 cut(s)	153, 357
HpaII	CCGG	6 cut(s)	39, 81, 213, 390, 693, 780
HphI	GGTGA	4 cut(s)	191, 215, 227, 634
Hpy166II	GTNNAC	2 cut(s)	448, 742
Hpy188III	TCNNGA	3 cut(s)	126, 490, 634
Hpy8I	GTNNAC	2 cut(s)	448, 742
HpyAV	CCTTC	2 cut(s)	78, 619
HpyCH4III	ACNGT	2 cut(s)	224, 275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 44, 438, 473
HpyF3I	CTNAG	2 cut(s)	244, 612
Hsp92II	CATG	6 cut(s)	16, 97, 138, 310, 655, 664
HspAI	GCGC	2 cut(s)	452, 498
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	87, 288
LmnI	GCTCC	2 cut(s)	392, 628
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	215, 688
MalI	GATC	2 cut(s)	89, 290
MboI	GATC	2 cut(s)	87, 288
MboII	GAAGA	3 cut(s)	322, 394, 557
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	9 cut(s)	170, 186, 243, 282, 319, 342, 397, 420, 633
MlsI	TGGCCA	2 cut(s)	467, 650
MluCI	AATT	1 cut(s)	516
MluNI	TGGCCA	2 cut(s)	467, 650
MlyI	GAGTC	2 cut(s)	162, 366
Mox20I	TGGCCA	2 cut(s)	467, 650
MroNI	GCCGGC	1 cut(s)	38
MscI	TGGCCA	2 cut(s)	467, 650
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	2 cut(s)	467, 650
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	6 cut(s)	39, 81, 213, 390, 693, 780
MspR9I	CCNGG	5 cut(s)	213, 298, 561, 754, 780
MvaI	CCWGG	3 cut(s)	298, 561, 754
MvnI	CGCG	2 cut(s)	107, 452
MwoI	GCNNNNNNNGC	4 cut(s)	14, 44, 438, 473
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	2 cut(s)	213, 780
NcoI	CCATGG	2 cut(s)	12, 134
NdeII	GATC	2 cut(s)	87, 288
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	6 cut(s)	16, 97, 138, 310, 655, 664
NlaIV	GGNNCC	4 cut(s)	79, 168, 394, 702
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	40
PflFI	GACNNNGTC	2 cut(s)	152, 737
PflMI	CCANNNNNTGG	2 cut(s)	140, 176
PkrI	GCNGC	2 cut(s)	7, 569
PleI	GAGTC	2 cut(s)	161, 365
PpsI	GAGTC	2 cut(s)	161, 365
Psp124BI	GAGCTC	3 cut(s)	282, 342, 633
Psp6I	CCWGG	3 cut(s)	296, 559, 752
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	3 cut(s)	296, 559, 752
PspN4I	GGNNCC	4 cut(s)	79, 168, 394, 702
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	9 cut(s)	143, 166, 167, 303, 346, 445, 474, 527, 701
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	2 cut(s)	152, 737
RsaI	GTAC	2 cut(s)	51, 161
RsaNI	GTAC	2 cut(s)	50, 160
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	3 cut(s)	282, 342, 633
SacII	CCGCGG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	2 cut(s)	6, 568
Sau3AI	GATC	2 cut(s)	87, 288
Sau96I	GGNCC	9 cut(s)	143, 166, 167, 303, 346, 445, 474, 527, 701
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	2 cut(s)	162, 366
ScrFI	CCNGG	5 cut(s)	213, 298, 561, 754, 780
SduI	GDGCHC	9 cut(s)	170, 186, 243, 282, 319, 342, 397, 420, 633
SfaNI	GCATC	1 cut(s)	468
SfiI	GGCCNNNNNGGCC	1 cut(s)	473
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	445, 701
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	617, 632
SmoI	CTYRAG	2 cut(s)	617, 632
Sse9I	AATT	1 cut(s)	516
SsiI	CCGC	4 cut(s)	105, 107, 349, 414
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	3 cut(s)	282, 342, 633
StyD4I	CCNGG	5 cut(s)	211, 296, 559, 752, 778
StyI	CCWWGG	2 cut(s)	12, 134
TaaI	ACNGT	2 cut(s)	224, 275
TaqI	TCGA	2 cut(s)	282, 420
TasI	AATT	1 cut(s)	516
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	2 cut(s)	205, 238
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	5, 567
Tsp45I	GTSAC	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	205, 238
Tth111I	GACNNNGTC	2 cut(s)	152, 737
Van91I	CCANNNNNTGG	2 cut(s)	140, 176
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	445, 701
XspI	CTAG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.