Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

10477885 .. 10479114

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTCAAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009743 GO:0009746 GO:0009750 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010033 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034284 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048046 GO:0050896 GO:0055035 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

267

Amino Acids

28.24

Weight (kDa)

5.47

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	67 - 234	1.4e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccII	CGCG	1 cut(s)	68
AciI	CCGC	6 cut(s)	6, 66, 68, 90, 246, 386
AclWI	GGATC	2 cut(s)	163, 743
AcoI	YGGCCR	4 cut(s)	3, 91, 477, 744
AcuI	CTGAAG	2 cut(s)	96, 400
AfaI	GTAC	2 cut(s)	152, 173
AfiI	CCNNNNNNNGG	3 cut(s)	152, 188, 454
AgsI	TTSAA	4 cut(s)	397, 518, 634, 695
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AloI	GAACNNNNNNTCC	2 cut(s)	675, 707
AluBI	AGCT	7 cut(s)	58, 204, 260, 352, 453, 585, 646
AluI	AGCT	7 cut(s)	58, 204, 260, 352, 453, 585, 646
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	222, 263
AlwI	GGATC	2 cut(s)	163, 743
Ama87I	CYCGRG	1 cut(s)	266
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	141, 336, 582
AspA2I	CCTAGG	1 cut(s)	331
AspS9I	GGNCC	8 cut(s)	130, 131, 179, 315, 486, 542, 716, 771
AsuC2I	CCSGG	3 cut(s)	225, 576, 795
AsuHPI	GGTGA	2 cut(s)	189, 649
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	179, 716
AvrII	CCTAGG	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	479
BanII	GRGCYC	4 cut(s)	134, 331, 432, 648
BbsI	GAAGAC	2 cut(s)	116, 334
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	153, 323, 594
BccI	CCATC	5 cut(s)	142, 231, 416, 499, 707
BceAI	ACGGC	3 cut(s)	35, 78, 497
BcnI	CCSGG	3 cut(s)	225, 576, 795
BcoDI	GTCTC	2 cut(s)	222, 263
BfaI	CTAG	4 cut(s)	293, 332, 360, 450
BfmI	CTRYAG	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	300
BglI	GCCNNNNNGGC	3 cut(s)	47, 138, 485
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	6 cut(s)	7, 70, 92, 143, 338, 584
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	225, 576, 795
Bme18I	GGWCC	2 cut(s)	179, 716
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	8 cut(s)	130, 131, 179, 315, 486, 542, 716, 771
BmiI	GGNNCC	6 cut(s)	132, 180, 284, 328, 511, 717
BmrFI	CCNGG	3 cut(s)	225, 576, 795
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	2 cut(s)	116, 334
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	3 cut(s)	225, 576, 795
BsaJI	CCNNGG	7 cut(s)	66, 82, 146, 223, 331, 558, 574
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 188, 454
Bse118I	RCCGGY	2 cut(s)	41, 401
Bse1I	ACTGG	2 cut(s)	712, 752
BseDI	CCNNGG	7 cut(s)	66, 82, 146, 223, 331, 558, 574
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	152, 188, 454
BseMII	CTCAG	3 cut(s)	339, 479, 618
BseNI	ACTGG	2 cut(s)	712, 752
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	134
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	153, 323, 594
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	7 cut(s)	42, 213, 225, 249, 402, 576, 795
BslFI	GGGAC	2 cut(s)	254, 729
BslI	CCNNNNNNNGG	3 cut(s)	152, 188, 454
BsmAI	GTCTC	2 cut(s)	222, 263
BsmFI	GGGAC	2 cut(s)	254, 729
BsmI	GAATGC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	266
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	4 cut(s)	134, 331, 432, 648
Bsp143I	GATC	3 cut(s)	155, 411, 748
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	6 cut(s)	6, 66, 68, 90, 246, 386
BspCNI	CTCAG	3 cut(s)	340, 478, 619
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	6 cut(s)	132, 180, 284, 328, 511, 717
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	2 cut(s)	163, 743
BsrFI	RCCGGY	2 cut(s)	41, 401
BsrI	ACTGG	2 cut(s)	712, 752
BssAI	RCCGGY	2 cut(s)	41, 401
BssECI	CCNNGG	7 cut(s)	66, 82, 146, 223, 331, 558, 574
BssMI	GATC	3 cut(s)	155, 411, 748
BssT1I	CCWWGG	3 cut(s)	82, 146, 331
Bst4CI	ACNGT	3 cut(s)	115, 164, 287
BstDEI	CTNAG	3 cut(s)	348, 465, 627
BstDSI	CCRYGG	2 cut(s)	66, 146
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	158, 414, 751
BstMAI	GTCTC	2 cut(s)	222, 263
BstMBI	GATC	3 cut(s)	155, 411, 748
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 138, 485
BstSCI	CCNGG	3 cut(s)	223, 574, 793
BstSFI	CTRYAG	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	153, 323, 594
BstV2I	GAAGAC	2 cut(s)	116, 334
BstX2I	RGATCY	2 cut(s)	155, 411
BstYI	RGATCY	2 cut(s)	155, 411
BstZI	CGGCCG	1 cut(s)	91
BtgI	CCRYGG	2 cut(s)	66, 146
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	705
BveI	ACCTGC	1 cut(s)	300
Cfr10I	RCCGGY	2 cut(s)	41, 401
Cfr13I	GGNCC	8 cut(s)	130, 131, 179, 315, 486, 542, 716, 771
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	151, 172
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviAII	CATG	3 cut(s)	147, 319, 768
CviQI	GTAC	2 cut(s)	151, 172
DdeI	CTNAG	3 cut(s)	348, 465, 627
DpnI	GATC	3 cut(s)	157, 413, 750
DpnII	GATC	3 cut(s)	155, 411, 748
EaeI	YGGCCR	4 cut(s)	3, 91, 477, 744
EagI	CGGCCG	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	646
EclXI	CGGCCG	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	82, 146, 331
Eco24I	GRGCYC	4 cut(s)	134, 331, 432, 648
Eco47I	GGWCC	2 cut(s)	179, 716
Eco52I	CGGCCG	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	96, 400
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	82, 146, 331
EcoT38I	GRGCYC	4 cut(s)	134, 331, 432, 648
ErhI	CCWWGG	3 cut(s)	82, 146, 331
FaeI	CATG	3 cut(s)	150, 322, 771
FaiI	YATR	5 cut(s)	148, 320, 668, 677, 769
FaqI	GGGAC	2 cut(s)	254, 729
FatI	CATG	3 cut(s)	146, 318, 767
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	4 cut(s)	134, 331, 432, 648
Fsp4HI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
FspBI	CTAG	4 cut(s)	293, 332, 360, 450
GluI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
HapII	CCGG	7 cut(s)	42, 213, 225, 249, 402, 576, 795
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	150, 322, 771
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	4 cut(s)	194, 369, 528, 684
HpaI	GTTAAC	1 cut(s)	757
HpaII	CCGG	7 cut(s)	42, 213, 225, 249, 402, 576, 795
HphI	GGTGA	2 cut(s)	189, 649
Hpy166II	GTNNAC	4 cut(s)	290, 407, 460, 757
Hpy188I	TCNGA	5 cut(s)	76, 160, 326, 380, 468
Hpy188III	TCNNGA	1 cut(s)	649
Hpy8I	GTNNAC	4 cut(s)	290, 407, 460, 757
HpyAV	CCTTC	5 cut(s)	46, 512, 628, 634, 784
HpyCH4III	ACNGT	3 cut(s)	115, 164, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 138, 485
HpyF3I	CTNAG	3 cut(s)	348, 465, 627
Hsp92II	CATG	3 cut(s)	150, 322, 771
KspAI	GTTAAC	1 cut(s)	757
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	155, 411, 748
LmnI	GCTCC	3 cut(s)	326, 509, 643
Lsp1109I	GCAGC	3 cut(s)	153, 323, 594
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	4 cut(s)	293, 332, 360, 450
MaeIII	GTNAC	2 cut(s)	97, 703
MalI	GATC	3 cut(s)	157, 413, 750
MboI	GATC	3 cut(s)	155, 411, 748
MboII	GAAGA	5 cut(s)	121, 334, 406, 669, 679
MflI	RGATCY	2 cut(s)	155, 411
MhlI	GDGCHC	4 cut(s)	134, 331, 432, 648
MlsI	TGGCCA	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	378, 537
MnlI	CCTC	8 cut(s)	19, 37, 99, 376, 419, 547, 553, 610
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	1 cut(s)	756
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	2 cut(s)	68, 260
MspI	CCGG	7 cut(s)	42, 213, 225, 249, 402, 576, 795
MspR9I	CCNGG	3 cut(s)	225, 576, 795
Mva1269I	GAATGC	1 cut(s)	620
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	47, 138, 485
NciI	CCSGG	3 cut(s)	225, 576, 795
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	155, 411, 748
NlaIII	CATG	3 cut(s)	150, 322, 771
NlaIV	GGNNCC	6 cut(s)	132, 180, 284, 328, 511, 717
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	97, 703
PaqCI	CACCTGC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	194, 684
PflFI	GACNNNGTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	6 cut(s)	7, 70, 92, 143, 338, 584
PleI	GAGTC	2 cut(s)	377, 536
PpsI	GAGTC	2 cut(s)	377, 536
Psp124BI	GAGCTC	1 cut(s)	648
PspN4I	GGNNCC	6 cut(s)	132, 180, 284, 328, 511, 717
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	8 cut(s)	130, 131, 179, 315, 486, 542, 716, 771
PsuI	RGATCY	2 cut(s)	155, 411
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	152, 173
RsaNI	GTAC	2 cut(s)	151, 172
SacI	GAGCTC	1 cut(s)	648
SacII	CCGCGG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	6 cut(s)	6, 69, 91, 142, 337, 583
Sau3AI	GATC	3 cut(s)	155, 411, 748
Sau96I	GGNCC	8 cut(s)	130, 131, 179, 315, 486, 542, 716, 771
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	2 cut(s)	378, 537
ScrFI	CCNGG	3 cut(s)	225, 576, 795
SduI	GDGCHC	4 cut(s)	134, 331, 432, 648
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	523
SfiI	GGCCNNNNNGGCC	1 cut(s)	485
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	2 cut(s)	179, 716
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
SsiI	CCGC	6 cut(s)	6, 66, 68, 90, 246, 386
SspMI	CTAG	4 cut(s)	293, 332, 360, 450
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	3 cut(s)	223, 574, 793
StyI	CCWWGG	3 cut(s)	82, 146, 331
TaaI	ACNGT	3 cut(s)	115, 164, 287
TaqI	TCGA	2 cut(s)	432, 588
TaqII	GACCGA	1 cut(s)	733
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	3 cut(s)	8, 71, 93
TfiI	GAWTC	2 cut(s)	194, 684
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	2 cut(s)	97, 703
TseI	GCWGC	3 cut(s)	141, 336, 582
Tsp45I	GTSAC	2 cut(s)	97, 703
TspGWI	ACGGA	4 cut(s)	168, 249, 381, 669
TspRI	CASTG	1 cut(s)	712
Tth111I	GACNNNGTC	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	179, 716
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	4 cut(s)	293, 332, 360, 450
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.