FvH4_3g06120

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3521719 .. 3522855
1137 bp
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UTR
Exon/CDS
Intron
FvH4_3g06120.t1

Sequence Viewer

Length: 792 bp
ATGGCTGCTTCCACAATGGCCCTCTCTTCCCCAACATTCGCCGGCAAGGCTGTGCAACTTGCCCCCGCCGAGGTTTTCGGAACCGGAAGGATCTCCATGAGGAAAACCGTCGGCAAGGCTGTTTCCTCCGGAAGCCCATGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACCTCAAAGGTGAGTTCCCCGGTGACTACGGTTGGGACACTGCTGGGCTCTCAGCCGACCCAGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGGTGGGCAATGCTCGGAGCTCTCGGATGCGTCTTTCCCGAGCTTTTGGCCCGCAACGGCGTCAAGTTTGGCGAGGCTGTGTGGTTCAAGGCCGGAGCCCAAATCTTCAGTGAGGGCGGGCTCGACTACTTGGGCAACCCTAGCTTGGTCCACGCGCAAAGCATCTTGGCCATCTGGGCCACCCAAGTCATCTTGATGGGCGCAGTCGAGGGATACAGAATTGCTGGAGGCCCACTTGGAGAAGTTGAAGACCCACTTTACCCAGGAGGCAGCTTTGACCCATTGGGTCTGGCTGATGACCCAGAAGCTTTTGCTGAGCTTAAGGTGAAGGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCTATGTTTGGCTTCTTTGTTCAGGCTATTGTCACCGGAAAGGGACCGTTGGAGAACCTTGCCGACCACCTTGCCGACCCAGTGAACAACAATGCCTGGTCATACGCCACCAACTTTGTCCCCGGAAAGTGA

Protein Analysis

264

Amino Acids

27.98

Weight (kDa)

5.16

Isoelectric Point (pI)

21.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 63 - 230 7e-51 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 3 cut(s) 66, 352, 417
AclWI GGATC 2 cut(s) 98, 286
AcoI YGGCCR 2 cut(s) 468, 651
AcuI CTGAAG 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 143, 164
AfiI CCNNNNNNNGG 4 cut(s) 70, 143, 179, 445
AflII CTTAAG 1 cut(s) 620
AgsI TTSAA 3 cut(s) 287, 388, 548
AjnI CCWGG 3 cut(s) 299, 562, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 9 cut(s) 195, 283, 320, 343, 444, 573, 608, 619, 634
AluI AGCT 9 cut(s) 195, 283, 320, 343, 444, 573, 608, 619, 634
Alw21I GWGCWC 2 cut(s) 322, 636
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 98, 286
Ama87I CYCGRG 1 cut(s) 338
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 9 cut(s) 18, 145, 169, 348, 390, 468, 477, 529, 651
ApaI GGGCCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 5, 570
AspLEI GCGC 2 cut(s) 457, 503
AspS9I GGNCC 9 cut(s) 19, 146, 169, 170, 349, 448, 477, 530, 704
AsuC2I CCSGG 2 cut(s) 216, 783
AsuHPI GGTGA 4 cut(s) 218, 230, 637, 685
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 2 cut(s) 448, 704
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 2 cut(s) 470, 653
BanII GRGCYC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 322, 636
BbvI GCAGC 1 cut(s) 582
BccI CCATC 2 cut(s) 479, 490
BceAI ACGGC 2 cut(s) 160, 373
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 3 cut(s) 301, 564, 757
BciVI GTATCC 1 cut(s) 506
BcnI CCSGG 2 cut(s) 216, 783
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 620
BfuI GTATCC 1 cut(s) 506
BglI GCCNNNNNGGC 2 cut(s) 47, 476
BisI GCNGC 2 cut(s) 6, 571
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 2 cut(s) 7, 572
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 5 cut(s) 216, 301, 564, 757, 783
Bme18I GGWCC 2 cut(s) 448, 704
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 9 cut(s) 19, 146, 169, 170, 349, 448, 477, 530, 704
BmiI GGNNCC 4 cut(s) 82, 171, 397, 705
BmrFI CCNGG 5 cut(s) 216, 301, 564, 757, 783
BmrI ACTGGG 1 cut(s) 734
BmsI GCATC 2 cut(s) 317, 471
BmuI ACTGGG 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 2 cut(s) 283, 546
Bpu1102I GCTNAGC 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 2 cut(s) 216, 783
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 5 cut(s) 69, 137, 214, 562, 781
BsaWI WCCGGW 3 cut(s) 83, 128, 695
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 143, 179, 445
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 128
BseBI CCWGG 3 cut(s) 301, 564, 757
BseDI CCNNGG 5 cut(s) 69, 137, 214, 562, 781
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 4 cut(s) 70, 143, 179, 445
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 261, 606
BseNI ACTGG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 1 cut(s) 582
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 9 cut(s) 20, 147, 171, 350, 392, 470, 479, 531, 653
BsiHKAI GWGCWC 2 cut(s) 322, 636
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 7 cut(s) 42, 84, 129, 216, 393, 696, 783
BslFI GGGAC 3 cut(s) 245, 717, 764
BslI CCNNNNNNNGG 4 cut(s) 70, 143, 179, 445
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 3 cut(s) 245, 717, 764
BsnI GGCC 9 cut(s) 20, 147, 171, 350, 392, 470, 479, 531, 653
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 338
Bsp120I GGGCCC 1 cut(s) 169
Bsp1286I GDGCHC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 2 cut(s) 90, 291
Bsp1720I GCTNAGC 1 cut(s) 615
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 3 cut(s) 66, 352, 417
BspANI GGCC 9 cut(s) 20, 147, 171, 350, 392, 470, 479, 531, 653
BspCNI CTCAG 2 cut(s) 260, 607
BspEI TCCGGA 1 cut(s) 128
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 4 cut(s) 82, 171, 397, 705
BspPI GGATC 2 cut(s) 98, 286
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 740
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 5 cut(s) 69, 137, 214, 562, 781
BssMI GATC 2 cut(s) 90, 291
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 3 cut(s) 301, 564, 757
Bst4CI ACNGT 4 cut(s) 109, 227, 278, 708
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 43, 185, 352, 419
BstDEI CTNAG 2 cut(s) 247, 615
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 332
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 2 cut(s) 457, 503
BstKTI GATC 2 cut(s) 93, 294
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 90, 291
BstMWI GCNNNNNNNGC 3 cut(s) 47, 441, 476
BstNI CCWGG 3 cut(s) 301, 564, 757
BstSCI CCNGG 5 cut(s) 214, 299, 562, 755, 781
BstSLI GKGCMC 1 cut(s) 173
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 582
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuI GTATCC 1 cut(s) 506
BsuRI GGCC 9 cut(s) 20, 147, 171, 350, 392, 470, 479, 531, 653
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 234, 415, 747
Cac8I GCNNGC 4 cut(s) 43, 185, 352, 419
CfoI GCGC 2 cut(s) 457, 503
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 9 cut(s) 19, 146, 169, 170, 349, 448, 477, 530, 704
CseI GACGC 2 cut(s) 319, 349
Csp6I GTAC 2 cut(s) 142, 163
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 3 cut(s) 97, 138, 655
CviQI GTAC 2 cut(s) 142, 163
DdeI CTNAG 2 cut(s) 247, 615
DpnI GATC 2 cut(s) 92, 293
DpnII GATC 2 cut(s) 90, 291
EaeI YGGCCR 2 cut(s) 468, 651
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Ecl136II GAGCTC 2 cut(s) 320, 634
Eco130I CCWWGG 1 cut(s) 137
Eco24I GRGCYC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 2 cut(s) 448, 704
Eco53kI GAGCTC 2 cut(s) 320, 634
Eco57I CTGAAG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 2 cut(s) 320, 634
EcoRII CCWGG 3 cut(s) 299, 562, 755
EcoT14I CCWWGG 1 cut(s) 137
EcoT38I GRGCYC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 3 cut(s) 100, 141, 658
FaiI YATR 5 cut(s) 98, 139, 656, 665, 763
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 3 cut(s) 245, 717, 764
FatI CATG 3 cut(s) 96, 137, 654
FauI CCCGC 3 cut(s) 73, 359, 410
Fnu4HI GCNGC 2 cut(s) 6, 571
FokI GGATG 1 cut(s) 339
FriOI GRGCYC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
Fsp4HI GCNGC 2 cut(s) 6, 571
FspBI CTAG 1 cut(s) 441
GlaI GCGC 2 cut(s) 456, 502
GluI GCNGC 2 cut(s) 6, 571
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 2 cut(s) 283, 546
HaeIII GGCC 9 cut(s) 20, 147, 171, 350, 392, 470, 479, 531, 653
HapII CCGG 7 cut(s) 42, 84, 129, 216, 393, 696, 783
HgaI GACGC 2 cut(s) 319, 349
HhaI GCGC 2 cut(s) 457, 503
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 100, 141, 658
Hin6I GCGC 2 cut(s) 455, 501
HinP1I GCGC 2 cut(s) 455, 501
HindIII AAGCTT 1 cut(s) 606
HinfI GANTC 1 cut(s) 156
HpaII CCGG 7 cut(s) 42, 84, 129, 216, 393, 696, 783
HphI GGTGA 4 cut(s) 218, 230, 637, 685
Hpy166II GTNNAC 2 cut(s) 451, 745
Hpy188I TCNGA 3 cut(s) 80, 317, 326
Hpy188III TCNNGA 4 cut(s) 129, 338, 493, 637
Hpy8I GTNNAC 2 cut(s) 451, 745
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 81, 622
HpyCH4III ACNGT 4 cut(s) 109, 227, 278, 708
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 441, 476
HpyF3I CTNAG 2 cut(s) 247, 615
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 100, 141, 658
HspAI GCGC 2 cut(s) 455, 501
Kpn2I TCCGGA 1 cut(s) 128
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 90, 291
LmnI GCTCC 3 cut(s) 317, 395, 631
Lsp1109I GCAGC 1 cut(s) 582
LweI GCATC 2 cut(s) 317, 471
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 218, 691
MalI GATC 2 cut(s) 92, 293
MboI GATC 2 cut(s) 90, 291
MboII GAAGA 3 cut(s) 18, 397, 560
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
MlsI TGGCCA 2 cut(s) 470, 653
MluCI AATT 1 cut(s) 519
MluNI TGGCCA 2 cut(s) 470, 653
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 690
Mox20I TGGCCA 2 cut(s) 470, 653
MroI TCCGGA 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 41
MscI TGGCCA 2 cut(s) 470, 653
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 2 cut(s) 470, 653
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 7 cut(s) 42, 84, 129, 216, 393, 696, 783
MspR9I CCNGG 5 cut(s) 216, 301, 564, 757, 783
MvaI CCWGG 3 cut(s) 301, 564, 757
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 3 cut(s) 47, 441, 476
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 216, 783
NcoI CCATGG 1 cut(s) 137
NdeII GATC 2 cut(s) 90, 291
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 100, 141, 658
NlaIV GGNNCC 4 cut(s) 82, 171, 397, 705
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 218, 691
PdiI GCCGGC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 2 cut(s) 7, 572
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 322, 636
Psp6I CCWGG 3 cut(s) 299, 562, 755
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 299, 562, 755
PspN4I GGNNCC 4 cut(s) 82, 171, 397, 705
PspOMI GGGCCC 1 cut(s) 169
PspPI GGNCC 9 cut(s) 19, 146, 169, 170, 349, 448, 477, 530, 704
PsuI RGATCY 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 2 cut(s) 143, 164
RsaNI GTAC 2 cut(s) 142, 163
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 2 cut(s) 322, 636
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 2 cut(s) 6, 571
Sau3AI GATC 2 cut(s) 90, 291
Sau96I GGNCC 9 cut(s) 19, 146, 169, 170, 349, 448, 477, 530, 704
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 5 cut(s) 216, 301, 564, 757, 783
SduI GDGCHC 7 cut(s) 173, 189, 246, 322, 400, 423, 636
SfaNI GCATC 2 cut(s) 317, 471
SfiI GGCCNNNNNGGCC 1 cut(s) 476
SinI GGWCC 2 cut(s) 448, 704
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 620, 635
SmoI CTYRAG 2 cut(s) 620, 635
Sse9I AATT 1 cut(s) 519
SsiI CCGC 3 cut(s) 66, 352, 417
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 2 cut(s) 322, 636
StyD4I CCNGG 5 cut(s) 214, 299, 562, 755, 781
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 4 cut(s) 109, 227, 278, 708
TaqI TCGA 2 cut(s) 423, 507
TasI AATT 1 cut(s) 519
TatI WGTACW 1 cut(s) 162
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 3 cut(s) 241, 415, 747
TseFI GTSAC 2 cut(s) 218, 691
TseI GCWGC 2 cut(s) 5, 570
Tsp45I GTSAC 2 cut(s) 218, 691
TspRI CASTG 3 cut(s) 241, 415, 747
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 2 cut(s) 448, 704
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.