Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

3728016 .. 3728975

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTGCCTCCACTATGGCTCTCTCTTCCCCCACATTCGCCGGCAAGGCCGTGCAACTTGCTCCGGGAGCCACCGAGCTTTTCGGCAACGGAAGAGTCTCCATGAGGAAAACTGGGGCTAAGCAAGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACAGAGTTAAGTACTTGGGCCCATTCTCTGGTGAGCCCCCAAGTTACCTAACTGGTGAGTTCCCTGGTGACTATGGCTGGGACACTGCTGGGCTTTCAGCTGACCCAGAGACCTTCGCCAAGAACCGTGAGCTTGAGGTGATCCACTCCAGATGGGCCATGCTAGGAGCTCTTGGGTGTGTTTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAGTTCGGTGAAGCCGTGTGGTTCAAGGCCGGAGCCCAAATCTTCAGCGAGGGCGGTCTTGACTACTTGGGCAACCCTAGCTTGGTCCATGCCCAAAGCATCTTGGCCATCTGGGCTACCCAAGTTGTGTTGATGGGGGCAGTTGAGGGATACAGAATTGCTGGTGGGCCACTTGGAGAGATAACTGACCCACTTTACCCAGGTGGAAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAACGGTAGATTGGCCATGTTCTCCATGTTTGGTTTCTTTGTCCAGGCCATTGTCACCGGAAAGGGACCATTGGAGAACCTTGCTGACCACCTTGCAGACCCAGTCAACAACAACGCCTGGTCCTATGCCACTAACTTTGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

266

Amino Acids

28.13

Weight (kDa)

5.14

Isoelectric Point (pI)

21.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	2 cut(s)	358, 423
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	474, 657
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	149, 170
AfiI	CCNNNNNNNGG	3 cut(s)	149, 185, 451
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	4 cut(s)	220, 568, 687, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AluBI	AGCT	9 cut(s)	79, 257, 289, 326, 349, 450, 579, 625, 640
AluI	AGCT	9 cut(s)	79, 257, 289, 326, 349, 450, 579, 625, 640
Alw21I	GWGCWC	4 cut(s)	328, 351, 627, 642
Alw26I	GTCTC	2 cut(s)	103, 260
AlwI	GGATC	1 cut(s)	292
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	5
AsuC2I	CCSGG	2 cut(s)	66, 789
AsuHPI	GGTGA	7 cut(s)	200, 224, 236, 307, 389, 643, 691
AvaII	GGWCC	3 cut(s)	454, 710, 765
BaeGI	GKGCMC	1 cut(s)	179
BalI	TGGCCA	2 cut(s)	476, 659
BanII	GRGCYC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
Bbv12I	GWGCWC	4 cut(s)	328, 351, 627, 642
BccI	CCATC	3 cut(s)	303, 485, 496
BceAI	ACGGC	3 cut(s)	35, 166, 368
BciT130I	CCWGG	4 cut(s)	222, 570, 689, 763
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	2 cut(s)	66, 789
BcoDI	GTCTC	2 cut(s)	103, 260
BfaI	CTAG	2 cut(s)	320, 447
BfuI	GTATCC	1 cut(s)	512
BglI	GCCNNNNNGGC	2 cut(s)	47, 482
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	2 cut(s)	120, 621
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	6 cut(s)	66, 222, 570, 689, 763, 789
Bme18I	GGWCC	3 cut(s)	454, 710, 765
BmiI	GGNNCC	4 cut(s)	70, 177, 403, 711
BmrFI	CCNGG	6 cut(s)	66, 222, 570, 689, 763, 789
BmrI	ACTGGG	2 cut(s)	123, 740
BmsI	GCATC	1 cut(s)	477
BmuI	ACTGGG	2 cut(s)	123, 740
BpmI	CTGGAG	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	345
Bpu1102I	GCTNAGC	2 cut(s)	120, 621
BpuEI	CTTGAG	3 cut(s)	311, 611, 626
BpuMI	CCSGG	2 cut(s)	66, 789
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	143, 220, 568, 787
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 185, 451
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	118, 214, 746
BseBI	CCWGG	4 cut(s)	222, 570, 689, 763
BseDI	CCNNGG	4 cut(s)	143, 220, 568, 787
BseLI	CCNNNNNNNGG	3 cut(s)	149, 185, 451
BseMII	CTCAG	2 cut(s)	336, 612
BseNI	ACTGG	3 cut(s)	118, 214, 746
BseSI	GKGCMC	1 cut(s)	179
BseYI	CCCAGC	2 cut(s)	234, 245
BsiHKAI	GWGCWC	4 cut(s)	328, 351, 627, 642
BsiSI	CCGG	5 cut(s)	42, 65, 399, 702, 789
BslFI	GGGAC	3 cut(s)	251, 723, 770
BslI	CCNNNNNNNGG	3 cut(s)	149, 185, 451
BsmAI	GTCTC	2 cut(s)	103, 260
BsmFI	GGGAC	3 cut(s)	251, 723, 770
Bso31I	GGTCTC	1 cut(s)	260
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
Bsp143I	GATC	1 cut(s)	297
Bsp1720I	GCTNAGC	2 cut(s)	120, 621
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	2 cut(s)	358, 423
BspCNI	CTCAG	2 cut(s)	337, 613
BspLI	GGNNCC	4 cut(s)	70, 177, 403, 711
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	118, 214, 746
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	143, 220, 568, 787
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	4 cut(s)	222, 570, 689, 763
Bst4CI	ACNGT	3 cut(s)	284, 365, 650
Bst6I	CTCTTC	2 cut(s)	31, 88
BstC8I	GCNNGC	2 cut(s)	43, 358
BstDEI	CTNAG	3 cut(s)	120, 345, 621
BstDSI	CCRYGG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	2 cut(s)	103, 260
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 68, 447, 482
BstNI	CCWGG	4 cut(s)	222, 570, 689, 763
BstSCI	CCNGG	6 cut(s)	64, 220, 568, 687, 761, 787
BstSLI	GKGCMC	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	512
BtgI	CCRYGG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	43, 358
Cfr10I	RCCGGY	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	148, 169
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	6 cut(s)	103, 144, 316, 458, 661, 670
CviQI	GTAC	2 cut(s)	148, 169
DdeI	CTNAG	3 cut(s)	120, 345, 621
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	474, 657
Eam1104I	CTCTTC	2 cut(s)	31, 88
EarI	CTCTTC	2 cut(s)	31, 88
Ecl136II	GAGCTC	4 cut(s)	326, 349, 625, 640
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	3 cut(s)	454, 710, 765
Eco53kI	GAGCTC	4 cut(s)	326, 349, 625, 640
Eco57I	CTGAAG	1 cut(s)	397
EcoICRI	GAGCTC	4 cut(s)	326, 349, 625, 640
EcoRII	CCWGG	4 cut(s)	220, 568, 687, 761
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
FaiI	YATR	9 cut(s)	17, 104, 145, 231, 317, 459, 662, 671, 771
FaqI	GGGAC	3 cut(s)	251, 723, 770
FatI	CATG	6 cut(s)	102, 143, 315, 457, 660, 669
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	320, 447
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	2 cut(s)	238, 249
GsuI	CTGGAG	1 cut(s)	289
HapII	CCGG	5 cut(s)	42, 65, 399, 702, 789
Hin1II	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	5 cut(s)	42, 65, 399, 702, 789
HphI	GGTGA	7 cut(s)	200, 224, 236, 307, 389, 643, 691
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188III	TCNNGA	4 cut(s)	135, 306, 428, 643
Hpy8I	GTNNAC	1 cut(s)	751
HpyAV	CCTTC	2 cut(s)	280, 628
HpyCH4III	ACNGT	3 cut(s)	284, 365, 650
HpyCH4V	TGCA	2 cut(s)	55, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 68, 447, 482
HpyF3I	CTNAG	3 cut(s)	120, 345, 621
Hsp92II	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	5 cut(s)	67, 68, 323, 401, 637
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	320, 447
MaeIII	GTNAC	3 cut(s)	200, 224, 697
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	3 cut(s)	18, 105, 403
MhlI	GDGCHC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
MlsI	TGGCCA	2 cut(s)	476, 659
MluCI	AATT	1 cut(s)	525
MluNI	TGGCCA	2 cut(s)	476, 659
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	19, 99, 142, 286, 412, 508, 604
Mox20I	TGGCCA	2 cut(s)	476, 659
MroNI	GCCGGC	1 cut(s)	41
MscI	TGGCCA	2 cut(s)	476, 659
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	2 cut(s)	476, 659
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	5 cut(s)	42, 65, 399, 702, 789
MspR9I	CCNGG	6 cut(s)	66, 222, 570, 689, 763, 789
MvaI	CCWGG	4 cut(s)	222, 570, 689, 763
MwoI	GCNNNNNNNGC	4 cut(s)	47, 68, 447, 482
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	2 cut(s)	66, 789
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	1 cut(s)	297
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
NlaIV	GGNNCC	4 cut(s)	70, 177, 403, 711
NmuCI	GTSAC	2 cut(s)	224, 697
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdiI	GCCGGC	1 cut(s)	43
PflFI	GACNNNGTC	1 cut(s)	746
PflMI	CCANNNNNTGG	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	4 cut(s)	328, 351, 627, 642
Psp6I	CCWGG	4 cut(s)	220, 568, 687, 761
PspFI	CCCAGC	2 cut(s)	234, 245
PspGI	CCWGG	4 cut(s)	220, 568, 687, 761
PspN4I	GGNNCC	4 cut(s)	70, 177, 403, 711
PspOMI	GGGCCC	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	149, 170
RsaNI	GTAC	2 cut(s)	148, 169
SacI	GAGCTC	4 cut(s)	328, 351, 627, 642
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	297
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	6 cut(s)	66, 222, 570, 689, 763, 789
SduI	GDGCHC	7 cut(s)	179, 195, 328, 351, 406, 627, 642
SfaNI	GCATC	1 cut(s)	477
SinI	GGWCC	3 cut(s)	454, 710, 765
SmlI	CTYRAG	3 cut(s)	290, 626, 641
SmoI	CTYRAG	3 cut(s)	290, 626, 641
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	2 cut(s)	358, 423
SspMI	CTAG	2 cut(s)	320, 447
SstI	GAGCTC	4 cut(s)	328, 351, 627, 642
StyD4I	CCNGG	6 cut(s)	64, 220, 568, 687, 761, 787
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	3 cut(s)	284, 365, 650
TasI	AATT	1 cut(s)	525
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	224, 697
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	224, 697
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	746
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	3 cut(s)	454, 710, 765
XspI	CTAG	2 cut(s)	320, 447
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.