Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

42171376 .. 42172173

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1289200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTGCTTCCACAATGGCTCTCTCCTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAACGGAAGAGTGTCCATGAGGAAAACTGCTACCAAACAAGTTTCCTCTGGCAGCCCATGGTACGGCCCTGACAGAGTCAAATACTTGGGCCCATTCTCCGGTGAGCCCCCAAGCTACCTCAAGGGCGAGTTCCCCGGTGACTACGGCTGGGACACCGCTGGACTCTCAGCCGACCCAGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTCGGAGCTCTTGGATGCGTTTTCCCCGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAGGCTGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACCTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACCCAAGTTGTGTTGATGGGAGCGGTTGAGGGATACAGAATTGCCGGCGGACCCCTCGGAGAGGTGACCGACCCCCTTTACCCCGGCGGAAGCTTCGACCCCTTGGGCCTTGCTGACGACCCAGAAGCCTTTGCCGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGATTGGCAATGTTCTCCATGTTTGGATTCTTTGTCCAGGCCATCGTCACCGGAAAGGGACCATTGGAGAATCTTGCCGACCACCTTGCAGACCCAGTTGCCAACAATGCCTGGAACTACGCCACAAACTTTGTACCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

266

Amino Acids

28.2

Weight (kDa)

5.29

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	65 - 232	9.2e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	509
AciI	CCGC	6 cut(s)	243, 358, 423, 509, 534, 573
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	149, 786
AfiI	CCNNNNNNNGG	4 cut(s)	149, 185, 451, 547
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	3 cut(s)	435, 687, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AluBI	AGCT	9 cut(s)	79, 201, 289, 326, 349, 450, 579, 625, 640
AluI	AGCT	9 cut(s)	79, 201, 289, 326, 349, 450, 579, 625, 640
Alw21I	GWGCWC	5 cut(s)	291, 328, 351, 627, 642
Alw26I	GTCTC	2 cut(s)	260, 431
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	2 cut(s)	64, 344
AoxI	GGCC	7 cut(s)	151, 175, 312, 396, 474, 592, 690
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	5, 138
AspS9I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
AsuC2I	CCSGG	5 cut(s)	65, 66, 222, 570, 789
AsuHPI	GGTGA	5 cut(s)	200, 236, 562, 643, 691
AvaI	CYCGRG	2 cut(s)	64, 344
AvaII	GGWCC	3 cut(s)	454, 536, 710
BaeGI	GKGCMC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	476
BanII	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Bbv12I	GWGCWC	5 cut(s)	291, 328, 351, 627, 642
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	4 cut(s)	303, 485, 496, 701
BceAI	ACGGC	3 cut(s)	35, 166, 247
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	3 cut(s)	437, 689, 763
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	5 cut(s)	65, 66, 222, 570, 789
BcoDI	GTCTC	2 cut(s)	260, 431
BfaI	CTAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	6, 139
BlsI	GCNGC	2 cut(s)	7, 140
Bme1390I	CCNGG	8 cut(s)	65, 66, 222, 437, 570, 689, 763, 789
Bme18I	GGWCC	3 cut(s)	454, 536, 710
BmeT110I	CYCGRG	2 cut(s)	64, 344
BmgT120I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
BmiI	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
BmrFI	CCNGG	8 cut(s)	65, 66, 222, 437, 570, 689, 763, 789
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	323, 477
BmuI	ACTGGG	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	289
BpuEI	CTTGAG	3 cut(s)	191, 611, 626
BpuMI	CCSGG	5 cut(s)	65, 66, 222, 570, 789
BsaI	GGTCTC	2 cut(s)	260, 431
BsaJI	CCNNGG	8 cut(s)	63, 64, 143, 220, 436, 541, 568, 588
BsaWI	WCCGGW	2 cut(s)	185, 701
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 185, 451, 547
Bse118I	RCCGGY	2 cut(s)	41, 530
Bse1I	ACTGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	3 cut(s)	437, 689, 763
BseDI	CCNNGG	8 cut(s)	63, 64, 143, 220, 436, 541, 568, 588
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	4 cut(s)	149, 185, 451, 547
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	234
BshFI	GGCC	7 cut(s)	153, 177, 314, 398, 476, 594, 692
BsiHKAI	GWGCWC	5 cut(s)	291, 328, 351, 627, 642
BsiHKCI	CYCGRG	2 cut(s)	64, 344
BsiSI	CCGG	9 cut(s)	42, 65, 186, 222, 399, 531, 570, 702, 789
BslFI	GGGAC	3 cut(s)	251, 340, 723
BslI	CCNNNNNNNGG	4 cut(s)	149, 185, 451, 547
BsmAI	GTCTC	2 cut(s)	260, 431
BsmFI	GGGAC	3 cut(s)	251, 340, 723
BsnI	GGCC	7 cut(s)	153, 177, 314, 398, 476, 594, 692
Bso31I	GGTCTC	2 cut(s)	260, 431
BsoBI	CYCGRG	2 cut(s)	64, 344
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Bsp143I	GATC	2 cut(s)	297, 408
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	6 cut(s)	243, 358, 423, 509, 534, 573
BspANI	GGCC	7 cut(s)	153, 177, 314, 398, 476, 594, 692
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	2 cut(s)	260, 431
BsrBI	CCGCTC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	666
BsrFI	RCCGGY	2 cut(s)	41, 530
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	2 cut(s)	41, 530
BssECI	CCNNGG	8 cut(s)	63, 64, 143, 220, 436, 541, 568, 588
BssMI	GATC	2 cut(s)	297, 408
BssT1I	CCWWGG	2 cut(s)	143, 588
Bst2UI	CCWGG	3 cut(s)	437, 689, 763
Bst4CI	ACNGT	2 cut(s)	284, 365
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	43, 532
BstDEI	CTNAG	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	550
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	300, 411
BstMAI	GTCTC	2 cut(s)	260, 431
BstMBI	GATC	2 cut(s)	297, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 482, 758
BstNI	CCWGG	3 cut(s)	437, 689, 763
BstPI	GGTNACC	1 cut(s)	550
BstSCI	CCNGG	8 cut(s)	63, 64, 220, 435, 568, 687, 761, 787
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	7 cut(s)	153, 177, 314, 398, 476, 594, 692
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	338
Cac8I	GCNNGC	2 cut(s)	43, 532
Cfr10I	RCCGGY	2 cut(s)	41, 530
Cfr13I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
Cfr9I	CCCGGG	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	148, 785
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	5 cut(s)	103, 144, 316, 458, 670
CviQI	GTAC	2 cut(s)	148, 785
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	2 cut(s)	299, 410
DpnII	GATC	2 cut(s)	297, 408
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	2 cut(s)	549, 588
Ecl136II	GAGCTC	5 cut(s)	289, 326, 349, 625, 640
Eco130I	CCWWGG	2 cut(s)	143, 588
Eco24I	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Eco31I	GGTCTC	2 cut(s)	260, 431
Eco47I	GGWCC	3 cut(s)	454, 536, 710
Eco53kI	GAGCTC	5 cut(s)	289, 326, 349, 625, 640
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	2 cut(s)	64, 344
Eco91I	GGTNACC	1 cut(s)	550
EcoICRI	GAGCTC	5 cut(s)	289, 326, 349, 625, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	550
EcoRII	CCWGG	3 cut(s)	435, 687, 761
EcoT14I	CCWWGG	2 cut(s)	143, 588
EcoT38I	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
ErhI	CCWWGG	2 cut(s)	143, 588
FaeI	CATG	5 cut(s)	106, 147, 319, 461, 673
FaiI	YATR	5 cut(s)	104, 145, 317, 459, 671
FaqI	GGGAC	3 cut(s)	251, 340, 723
FatI	CATG	5 cut(s)	102, 143, 315, 457, 669
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	6, 139
FokI	GGATG	1 cut(s)	345
FriOI	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Fsp4HI	GCNGC	2 cut(s)	6, 139
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	6, 139
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	7 cut(s)	153, 177, 314, 398, 476, 594, 692
HapII	CCGG	9 cut(s)	42, 65, 186, 222, 399, 531, 570, 702, 789
Hin1II	CATG	5 cut(s)	106, 147, 319, 461, 673
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	4 cut(s)	162, 249, 678, 721
HpaII	CCGG	9 cut(s)	42, 65, 186, 222, 399, 531, 570, 702, 789
HphI	GGTGA	5 cut(s)	200, 236, 562, 643, 691
Hpy188I	TCNGA	3 cut(s)	86, 323, 545
Hpy188III	TCNNGA	3 cut(s)	306, 428, 643
HpyAV	CCTTC	3 cut(s)	46, 280, 628
HpyCH4III	ACNGT	2 cut(s)	284, 365
HpyCH4V	TGCA	3 cut(s)	55, 461, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 482, 758
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	5 cut(s)	106, 147, 319, 461, 673
KroI	GCCGGC	2 cut(s)	41, 530
KroNI	GCCGGC	2 cut(s)	43, 532
Kzo9I	GATC	2 cut(s)	297, 408
LmnI	GCTCC	5 cut(s)	68, 323, 401, 506, 637
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	323, 477
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	224, 550, 697
MalI	GATC	2 cut(s)	299, 410
MbiI	CCGCTC	1 cut(s)	509
MboI	GATC	2 cut(s)	297, 408
MboII	GAAGA	3 cut(s)	105, 403, 663
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	1 cut(s)	525
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	171, 243
MnlI	CCTC	9 cut(s)	37, 99, 142, 215, 373, 412, 508, 541, 551
Mox20I	TGGCCA	1 cut(s)	476
MroNI	GCCGGC	2 cut(s)	41, 530
MscI	TGGCCA	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	9 cut(s)	42, 65, 186, 222, 399, 531, 570, 702, 789
MspR9I	CCNGG	8 cut(s)	65, 66, 222, 437, 570, 689, 763, 789
MvaI	CCWGG	3 cut(s)	437, 689, 763
MwoI	GCNNNNNNNGC	3 cut(s)	47, 482, 758
NaeI	GCCGGC	2 cut(s)	43, 532
NciI	CCSGG	5 cut(s)	65, 66, 222, 570, 789
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	297, 408
NgoMIV	GCCGGC	2 cut(s)	41, 530
NlaIII	CATG	5 cut(s)	106, 147, 319, 461, 673
NlaIV	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	3 cut(s)	224, 550, 697
PdiI	GCCGGC	2 cut(s)	43, 532
PfeI	GAWTC	2 cut(s)	678, 721
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	7, 140
PleI	GAGTC	2 cut(s)	170, 243
PpsI	GAGTC	2 cut(s)	170, 243
Psp124BI	GAGCTC	5 cut(s)	291, 328, 351, 627, 642
Psp6I	CCWGG	3 cut(s)	435, 687, 761
PspEI	GGTNACC	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	3 cut(s)	435, 687, 761
PspN4I	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	149, 786
RsaNI	GTAC	2 cut(s)	148, 785
SacI	GAGCTC	5 cut(s)	291, 328, 351, 627, 642
SatI	GCNGC	2 cut(s)	6, 139
Sau3AI	GATC	2 cut(s)	297, 408
Sau96I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
SchI	GAGTC	2 cut(s)	171, 243
ScrFI	CCNGG	8 cut(s)	65, 66, 222, 437, 570, 689, 763, 789
SduI	GDGCHC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
SfaNI	GCATC	2 cut(s)	323, 477
SinI	GGWCC	3 cut(s)	454, 536, 710
SmaI	CCCGGG	1 cut(s)	66
SmlI	CTYRAG	3 cut(s)	206, 626, 641
SmoI	CTYRAG	3 cut(s)	206, 626, 641
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	6 cut(s)	243, 358, 423, 509, 534, 573
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	5 cut(s)	291, 328, 351, 627, 642
StyD4I	CCNGG	8 cut(s)	63, 64, 220, 435, 568, 687, 761, 787
StyI	CCWWGG	2 cut(s)	143, 588
TaaI	ACNGT	2 cut(s)	284, 365
TaqI	TCGA	3 cut(s)	291, 429, 582
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	678, 721
TseFI	GTSAC	3 cut(s)	224, 550, 697
TseI	GCWGC	2 cut(s)	5, 138
Tsp45I	GTSAC	3 cut(s)	224, 550, 697
TspGWI	ACGGA	1 cut(s)	105
TspMI	CCCGGG	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	3 cut(s)	454, 536, 710
XagI	CCTNNNNNAGG	1 cut(s)	545
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.