Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

35876497 .. 35877337

Gene Structure 841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1265400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTGCTTCCACAATGGCTCTGTCTTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAATGGAAGAGTCTCCATGAGGAAAACTGCTACCAAAAAAGTCTCCTCTGGCAGCCCATGGTACGGCCCTGACAGGGTCAAGTACTTGGGCCCATTCTCAGGCGAGCCCCCAAGCTACCTCACCGGCGAGTTCCCCGGTGACTACGGCTGGGACACCGCCGGACTCTCAGCTGACCCAGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTCGGAGCTCTTGGATGCGTTTTCCCAGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAAGCCGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACCCAAGTGGTGTTGATGGGCGCAGTTGAGGGATACAGAATTGCCGGCGGACCCCTCGGAGAGGTGACCGACCCTCTTTACCCCGGAGGAAGCTTCGACCCGTTGGGCCTTGCCGATGACCCAGAAGCCTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTCCAGGCCATCGTCACCGGAAAGGGACCATTGGAGAACCTTGCCGACCACCTTGCCGACCCGGTCGCCAACAATGCCTGGAACTATGCCACAAACTTCGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

266

Amino Acids

28.17

Weight (kDa)

5.29

Isoelectric Point (pI)

21.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	65 - 232	8.2e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	243, 358, 423, 534
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	474, 657
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	149, 170
AfiI	CCNNNNNNNGG	5 cut(s)	149, 160, 185, 451, 547
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	687, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
Alw21I	GWGCWC	5 cut(s)	291, 328, 351, 627, 642
Alw26I	GTCTC	4 cut(s)	103, 133, 260, 431
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	8 cut(s)	151, 175, 312, 396, 474, 592, 657, 690
ApaI	GGGCCC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	5, 138
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
AsuC2I	CCSGG	6 cut(s)	65, 66, 222, 570, 746, 789
AsuHPI	GGTGA	5 cut(s)	199, 236, 562, 643, 691
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	454, 536, 710
BaeGI	GKGCMC	1 cut(s)	179
BalI	TGGCCA	2 cut(s)	476, 659
BanII	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	5 cut(s)	291, 328, 351, 627, 642
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	4 cut(s)	303, 485, 496, 701
BceAI	ACGGC	4 cut(s)	35, 166, 247, 368
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	2 cut(s)	689, 763
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	6 cut(s)	65, 66, 222, 570, 746, 789
BcoDI	GTCTC	4 cut(s)	103, 133, 260, 431
BfaI	CTAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	6, 139
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	2 cut(s)	7, 140
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	8 cut(s)	65, 66, 222, 570, 689, 746, 763, 789
Bme18I	GGWCC	3 cut(s)	454, 536, 710
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
BmiI	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
BmrFI	CCNGG	8 cut(s)	65, 66, 222, 570, 689, 746, 763, 789
BmsI	GCATC	2 cut(s)	323, 477
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	289
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	611, 626
BpuMI	CCSGG	6 cut(s)	65, 66, 222, 570, 746, 789
BsaI	GGTCTC	2 cut(s)	260, 431
BsaJI	CCNNGG	6 cut(s)	63, 64, 143, 220, 541, 568
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 160, 185, 451, 547
Bse118I	RCCGGY	3 cut(s)	41, 209, 530
BseBI	CCWGG	2 cut(s)	689, 763
BseDI	CCNNGG	6 cut(s)	63, 64, 143, 220, 541, 568
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	5 cut(s)	149, 160, 185, 451, 547
BseMII	CTCAG	3 cut(s)	198, 267, 612
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	750
BshFI	GGCC	8 cut(s)	153, 177, 314, 398, 476, 594, 659, 692
BsiEI	CGRYCG	1 cut(s)	750
BsiHKAI	GWGCWC	5 cut(s)	291, 328, 351, 627, 642
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	3 cut(s)	251, 340, 723
BslI	CCNNNNNNNGG	5 cut(s)	149, 160, 185, 451, 547
BsmAI	GTCTC	4 cut(s)	103, 133, 260, 431
BsmFI	GGGAC	3 cut(s)	251, 340, 723
BsnI	GGCC	8 cut(s)	153, 177, 314, 398, 476, 594, 659, 692
Bso31I	GGTCTC	2 cut(s)	260, 431
BsoBI	CYCGRG	1 cut(s)	64
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Bsp143I	GATC	2 cut(s)	297, 408
Bsp1720I	GCTNAGC	1 cut(s)	621
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	4 cut(s)	243, 358, 423, 534
BspANI	GGCC	8 cut(s)	153, 177, 314, 398, 476, 594, 659, 692
BspCNI	CTCAG	3 cut(s)	197, 266, 613
BspLI	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	2 cut(s)	260, 431
BsrFI	RCCGGY	3 cut(s)	41, 209, 530
BssAI	RCCGGY	3 cut(s)	41, 209, 530
BssECI	CCNNGG	6 cut(s)	63, 64, 143, 220, 541, 568
BssMI	GATC	2 cut(s)	297, 408
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	2 cut(s)	689, 763
Bst4CI	ACNGT	2 cut(s)	284, 365
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	43, 191, 532
BstDEI	CTNAG	3 cut(s)	184, 253, 621
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	550
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	300, 411
BstMAI	GTCTC	4 cut(s)	103, 133, 260, 431
BstMBI	GATC	2 cut(s)	297, 408
BstMCI	CGRYCG	1 cut(s)	750
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 482, 758
BstNI	CCWGG	2 cut(s)	689, 763
BstPI	GGTNACC	1 cut(s)	550
BstSCI	CCNGG	8 cut(s)	63, 64, 220, 568, 687, 744, 761, 787
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	8 cut(s)	153, 177, 314, 398, 476, 594, 659, 692
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	338
Cac8I	GCNNGC	3 cut(s)	43, 191, 532
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	3 cut(s)	41, 209, 530
Cfr13I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
Cfr9I	CCCGGG	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	148, 169
CviAII	CATG	6 cut(s)	103, 144, 316, 458, 661, 670
CviQI	GTAC	2 cut(s)	148, 169
DdeI	CTNAG	3 cut(s)	184, 253, 621
DpnI	GATC	2 cut(s)	299, 410
DpnII	GATC	2 cut(s)	297, 408
EaeI	YGGCCR	2 cut(s)	474, 657
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	549
Ecl136II	GAGCTC	5 cut(s)	289, 326, 349, 625, 640
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Eco31I	GGTCTC	2 cut(s)	260, 431
Eco47I	GGWCC	3 cut(s)	454, 536, 710
Eco53kI	GAGCTC	5 cut(s)	289, 326, 349, 625, 640
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	550
EcoICRI	GAGCTC	5 cut(s)	289, 326, 349, 625, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	687, 761
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
FaiI	YATR	7 cut(s)	104, 145, 317, 459, 662, 671, 771
FaqI	GGGAC	3 cut(s)	251, 340, 723
FatI	CATG	6 cut(s)	102, 143, 315, 457, 660, 669
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	6, 139
FokI	GGATG	1 cut(s)	345
FriOI	GRGCYC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
Fsp4HI	GCNGC	2 cut(s)	6, 139
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	6, 139
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	8 cut(s)	153, 177, 314, 398, 476, 594, 659, 692
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	3 cut(s)	96, 249, 678
HphI	GGTGA	5 cut(s)	199, 236, 562, 643, 691
Hpy188I	TCNGA	3 cut(s)	86, 323, 545
Hpy188III	TCNNGA	3 cut(s)	306, 428, 643
HpyAV	CCTTC	4 cut(s)	46, 280, 628, 645
HpyCH4III	ACNGT	2 cut(s)	284, 365
HpyCH4V	TGCA	2 cut(s)	55, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 482, 758
HpyF3I	CTNAG	3 cut(s)	184, 253, 621
Hsp92II	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
HspAI	GCGC	1 cut(s)	507
KroI	GCCGGC	2 cut(s)	41, 530
KroNI	GCCGGC	2 cut(s)	43, 532
Kzo9I	GATC	2 cut(s)	297, 408
LmnI	GCTCC	4 cut(s)	68, 323, 401, 637
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	323, 477
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	224, 550, 697
MalI	GATC	2 cut(s)	299, 410
MboI	GATC	2 cut(s)	297, 408
MboII	GAAGA	3 cut(s)	18, 105, 403
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
MlsI	TGGCCA	2 cut(s)	476, 659
MluCI	AATT	1 cut(s)	525
MluNI	TGGCCA	2 cut(s)	476, 659
MlyI	GAGTC	2 cut(s)	105, 243
MnlI	CCTC	9 cut(s)	99, 142, 215, 412, 508, 541, 551, 566, 570
Mox20I	TGGCCA	2 cut(s)	476, 659
MroNI	GCCGGC	2 cut(s)	41, 530
MscI	TGGCCA	2 cut(s)	476, 659
Msp20I	TGGCCA	2 cut(s)	476, 659
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	8 cut(s)	65, 66, 222, 570, 689, 746, 763, 789
MvaI	CCWGG	2 cut(s)	689, 763
MwoI	GCNNNNNNNGC	3 cut(s)	47, 482, 758
NaeI	GCCGGC	2 cut(s)	43, 532
NciI	CCSGG	6 cut(s)	65, 66, 222, 570, 746, 789
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	297, 408
NgoMIV	GCCGGC	2 cut(s)	41, 530
NlaIII	CATG	6 cut(s)	106, 147, 319, 461, 664, 673
NlaIV	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
NmuCI	GTSAC	3 cut(s)	224, 550, 697
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdiI	GCCGGC	2 cut(s)	43, 532
PfeI	GAWTC	1 cut(s)	678
PflFI	GACNNNGTC	2 cut(s)	161, 746
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	2 cut(s)	7, 140
PleI	GAGTC	2 cut(s)	104, 243
PpsI	GAGTC	2 cut(s)	104, 243
Psp124BI	GAGCTC	5 cut(s)	291, 328, 351, 627, 642
Psp6I	CCWGG	2 cut(s)	687, 761
PspEI	GGTNACC	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	687, 761
PspN4I	GGNNCC	5 cut(s)	70, 177, 403, 538, 711
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	2 cut(s)	161, 746
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	149, 170
RsaNI	GTAC	2 cut(s)	148, 169
SacI	GAGCTC	5 cut(s)	291, 328, 351, 627, 642
SatI	GCNGC	2 cut(s)	6, 139
Sau3AI	GATC	2 cut(s)	297, 408
Sau96I	GGNCC	8 cut(s)	152, 175, 176, 312, 454, 536, 592, 710
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	105, 243
ScrFI	CCNGG	8 cut(s)	65, 66, 222, 570, 689, 746, 763, 789
SduI	GDGCHC	8 cut(s)	179, 195, 291, 328, 351, 406, 627, 642
SfaNI	GCATC	2 cut(s)	323, 477
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	454, 536, 710
SmaI	CCCGGG	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	626, 641
SmoI	CTYRAG	2 cut(s)	626, 641
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	4 cut(s)	243, 358, 423, 534
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	5 cut(s)	291, 328, 351, 627, 642
StyD4I	CCNGG	8 cut(s)	63, 64, 220, 568, 687, 744, 761, 787
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	284, 365
TaqI	TCGA	3 cut(s)	291, 429, 582
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	1 cut(s)	525
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	678
TseFI	GTSAC	3 cut(s)	224, 550, 697
TseI	GCWGC	2 cut(s)	5, 138
Tsp45I	GTSAC	3 cut(s)	224, 550, 697
TspMI	CCCGGG	1 cut(s)	64
Tth111I	GACNNNGTC	2 cut(s)	161, 746
VpaK11BI	GGWCC	3 cut(s)	454, 536, 710
XagI	CCTNNNNNAGG	1 cut(s)	545
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.