Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

14524607 .. 14525918

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTGCTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAACCGGCCGAATCACCATGCGCAAAGCCTCCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCGATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009743 GO:0009746 GO:0009750 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010033 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034284 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048046 GO:0050896 GO:0055035 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

266

Amino Acids

28.17

Weight (kDa)

5.15

Isoelectric Point (pI)

22.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	65 - 233	1.4e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
AccII	CGCG	2 cut(s)	623, 731
AciI	CCGC	6 cut(s)	6, 68, 255, 383, 623, 731
AclWI	GGATC	4 cut(s)	147, 160, 254, 740
AcoI	YGGCCR	2 cut(s)	3, 91
AcuI	CTGAAG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	149, 170
AfiI	CCNNNNNNNGG	4 cut(s)	149, 185, 276, 451
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	394, 631
AjnI	CCWGG	1 cut(s)	571
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AloI	GAACNNNNNNTCC	2 cut(s)	672, 704
AluBI	AGCT	8 cut(s)	58, 201, 289, 349, 450, 509, 582, 643
AluI	AGCT	8 cut(s)	58, 201, 289, 349, 450, 509, 582, 643
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	4 cut(s)	147, 160, 254, 740
Ama87I	CYCGRG	3 cut(s)	263, 445, 611
AoxI	GGCC	8 cut(s)	3, 48, 69, 91, 312, 595, 693, 768
ApeKI	GCWGC	2 cut(s)	138, 333
AsiGI	ACCGGT	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	9 cut(s)	128, 176, 312, 454, 539, 595, 713, 733, 768
AsuC2I	CCSGG	3 cut(s)	65, 222, 792
AsuHPI	GGTGA	5 cut(s)	91, 200, 236, 646, 694
AvaI	CYCGRG	3 cut(s)	263, 445, 611
AvaII	GGWCC	6 cut(s)	128, 176, 454, 539, 713, 733
AvrII	CCTAGG	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	328, 645
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	150, 320
BccI	CCATC	3 cut(s)	139, 303, 530
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	573
BcnI	CCSGG	3 cut(s)	65, 222, 792
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	4 cut(s)	276, 290, 329, 357
BfmI	CTRYAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	4 cut(s)	6, 69, 139, 334
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	4 cut(s)	7, 70, 140, 335
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	4 cut(s)	65, 222, 573, 792
Bme18I	GGWCC	6 cut(s)	128, 176, 454, 539, 713, 733
BmeT110I	CYCGRG	3 cut(s)	263, 445, 611
BmgT120I	GGNCC	9 cut(s)	128, 176, 312, 454, 539, 595, 713, 733, 768
BmiI	GGNNCC	6 cut(s)	88, 154, 177, 281, 325, 714
BmrFI	CCNGG	4 cut(s)	65, 222, 573, 792
BmsI	GCATC	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	474, 629
BpuMI	CCSGG	3 cut(s)	65, 222, 792
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	7 cut(s)	63, 143, 220, 328, 571, 612, 790
BsaWI	WCCGGW	4 cut(s)	41, 125, 185, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 185, 276, 451
Bse118I	RCCGGY	3 cut(s)	89, 125, 245
Bse1I	ACTGG	2 cut(s)	214, 749
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	7 cut(s)	63, 143, 220, 328, 571, 612, 790
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	4 cut(s)	149, 185, 276, 451
BseMII	CTCAG	2 cut(s)	336, 476
BseNI	ACTGG	2 cut(s)	214, 749
BseRI	GAGGAG	1 cut(s)	16
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	150, 320
Bsh1236I	CGCG	2 cut(s)	623, 731
Bsh1285I	CGRYCG	2 cut(s)	94, 160
BshFI	GGCC	8 cut(s)	5, 50, 71, 93, 314, 597, 695, 770
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	2 cut(s)	94, 160
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	3 cut(s)	263, 445, 611
BslFI	GGGAC	3 cut(s)	251, 726, 773
BslI	CCNNNNNNNGG	4 cut(s)	149, 185, 276, 451
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	3 cut(s)	251, 726, 773
BsnI	GGCC	8 cut(s)	5, 50, 71, 93, 314, 597, 695, 770
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	3 cut(s)	263, 445, 611
Bsp1286I	GDGCHC	2 cut(s)	328, 645
Bsp143I	GATC	4 cut(s)	152, 259, 408, 745
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	6 cut(s)	6, 68, 255, 383, 623, 731
BspANI	GGCC	8 cut(s)	5, 50, 71, 93, 314, 597, 695, 770
BspCNI	CTCAG	2 cut(s)	337, 475
BspFNI	CGCG	2 cut(s)	623, 731
BspLI	GGNNCC	6 cut(s)	88, 154, 177, 281, 325, 714
BspPI	GGATC	4 cut(s)	147, 160, 254, 740
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	3 cut(s)	89, 125, 245
BsrI	ACTGG	2 cut(s)	214, 749
BssAI	RCCGGY	3 cut(s)	89, 125, 245
BssECI	CCNNGG	7 cut(s)	63, 143, 220, 328, 571, 612, 790
BssMI	GATC	4 cut(s)	152, 259, 408, 745
BssT1I	CCWWGG	2 cut(s)	143, 328
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	284, 717
BstDEI	CTNAG	3 cut(s)	345, 462, 472
BstDSI	CCRYGG	1 cut(s)	143
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	2 cut(s)	623, 731
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	4 cut(s)	155, 262, 411, 748
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	4 cut(s)	152, 259, 408, 745
BstMCI	CGRYCG	2 cut(s)	94, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 482
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	4 cut(s)	63, 220, 571, 790
BstSFI	CTRYAG	1 cut(s)	520
BstUI	CGCG	2 cut(s)	623, 731
BstV1I	GCAGC	2 cut(s)	150, 320
BstX2I	RGATCY	2 cut(s)	152, 408
BstYI	RGATCY	2 cut(s)	152, 408
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	8 cut(s)	5, 50, 71, 93, 314, 597, 695, 770
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	207, 240
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	3 cut(s)	89, 125, 245
Cfr13I	GGNCC	9 cut(s)	128, 176, 312, 454, 539, 595, 713, 733, 768
Csp6I	GTAC	2 cut(s)	148, 169
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	5 cut(s)	103, 144, 316, 502, 765
CviQI	GTAC	2 cut(s)	148, 169
DdeI	CTNAG	3 cut(s)	345, 462, 472
DpnI	GATC	4 cut(s)	154, 261, 410, 747
DpnII	GATC	4 cut(s)	152, 259, 408, 745
EaeI	YGGCCR	2 cut(s)	3, 91
EagI	CGGCCG	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	643
EclXI	CGGCCG	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	143, 328
Eco24I	GRGCYC	2 cut(s)	328, 645
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	6 cut(s)	128, 176, 454, 539, 713, 733
Eco52I	CGGCCG	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	3 cut(s)	263, 445, 611
EcoICRI	GAGCTC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	143, 328
EcoT22I	ATGCAT	1 cut(s)	766
EcoT38I	GRGCYC	2 cut(s)	328, 645
ErhI	CCWWGG	2 cut(s)	143, 328
FaeI	CATG	5 cut(s)	106, 147, 319, 505, 768
FaiI	YATR	7 cut(s)	104, 145, 317, 503, 665, 674, 766
FaqI	GGGAC	3 cut(s)	251, 726, 773
FatI	CATG	5 cut(s)	102, 143, 315, 501, 764
Fnu4HI	GCNGC	4 cut(s)	6, 69, 139, 334
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	2 cut(s)	328, 645
Fsp4HI	GCNGC	4 cut(s)	6, 69, 139, 334
FspBI	CTAG	4 cut(s)	276, 290, 329, 357
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	4 cut(s)	6, 69, 139, 334
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	8 cut(s)	5, 50, 71, 93, 314, 597, 695, 770
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	106, 147, 319, 505, 768
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	4 cut(s)	96, 162, 525, 681
HphI	GGTGA	5 cut(s)	91, 200, 236, 646, 694
Hpy166II	GTNNAC	3 cut(s)	404, 457, 754
Hpy188I	TCNGA	6 cut(s)	76, 157, 198, 323, 377, 465
Hpy188III	TCNNGA	2 cut(s)	263, 646
Hpy8I	GTNNAC	3 cut(s)	404, 457, 754
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	5 cut(s)	280, 625, 631, 648, 781
HpyCH4III	ACNGT	2 cut(s)	284, 717
HpyCH4V	TGCA	1 cut(s)	764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 482
HpyF3I	CTNAG	3 cut(s)	345, 462, 472
Hsp92II	CATG	5 cut(s)	106, 147, 319, 505, 768
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	152, 259, 408, 745
LmnI	GCTCC	4 cut(s)	323, 506, 579, 640
Lsp1109I	GCAGC	2 cut(s)	150, 320
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	4 cut(s)	276, 290, 329, 357
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	4 cut(s)	154, 261, 410, 747
MboI	GATC	4 cut(s)	152, 259, 408, 745
MboII	GAAGA	2 cut(s)	403, 676
MflI	RGATCY	2 cut(s)	152, 408
MhlI	GDGCHC	2 cut(s)	328, 645
MlyI	GAGTC	2 cut(s)	171, 534
MmeI	TCCRAC	2 cut(s)	180, 699
Mph1103I	ATGCAT	1 cut(s)	766
MseI	TTAA	1 cut(s)	54
MspR9I	CCNGG	4 cut(s)	65, 222, 573, 792
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	2 cut(s)	623, 731
MwoI	GCNNNNNNNGC	2 cut(s)	447, 482
NciI	CCSGG	3 cut(s)	65, 222, 792
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	152, 259, 408, 745
NlaIII	CATG	5 cut(s)	106, 147, 319, 505, 768
NlaIV	GGNNCC	6 cut(s)	88, 154, 177, 281, 325, 714
NmuCI	GTSAC	1 cut(s)	700
NsbI	TGCGCA	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	96, 681
PflFI	GACNNNGTC	1 cut(s)	161
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	7, 70, 140, 335
PleI	GAGTC	2 cut(s)	170, 533
PpsI	GAGTC	2 cut(s)	170, 533
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	6 cut(s)	88, 154, 177, 281, 325, 714
PspPI	GGNCC	9 cut(s)	128, 176, 312, 454, 539, 595, 713, 733, 768
PsuI	RGATCY	2 cut(s)	152, 408
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	149, 170
RsaNI	GTAC	2 cut(s)	148, 169
SacI	GAGCTC	1 cut(s)	645
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	4 cut(s)	6, 69, 139, 334
Sau3AI	GATC	4 cut(s)	152, 259, 408, 745
Sau96I	GGNCC	9 cut(s)	128, 176, 312, 454, 539, 595, 713, 733, 768
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	171, 534
ScrFI	CCNGG	4 cut(s)	65, 222, 573, 792
SduI	GDGCHC	2 cut(s)	328, 645
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	6 cut(s)	128, 176, 454, 539, 713, 733
SmlI	CTYRAG	2 cut(s)	489, 644
SmoI	CTYRAG	2 cut(s)	489, 644
SsiI	CCGC	6 cut(s)	6, 68, 255, 383, 623, 731
SspMI	CTAG	4 cut(s)	276, 290, 329, 357
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	4 cut(s)	63, 220, 571, 790
StyI	CCWWGG	2 cut(s)	143, 328
TaaI	ACNGT	2 cut(s)	284, 717
TaqI	TCGA	2 cut(s)	11, 585
TaqII	GACCGA	1 cut(s)	174
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	8, 71
TfiI	GAWTC	2 cut(s)	96, 681
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	214, 247
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	138, 333
Tsp45I	GTSAC	1 cut(s)	700
TspGWI	ACGGA	4 cut(s)	165, 378, 435, 666
TspRI	CASTG	2 cut(s)	214, 247
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	6 cut(s)	128, 176, 454, 539, 713, 733
XagI	CCTNNNNNAGG	1 cut(s)	274
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	4 cut(s)	276, 290, 329, 357
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.