Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Reverse (-)

24591529 .. 24592320

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTGCTTCCATGGCTCTCTCTTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAACGGAAGAGTGTCCATGAGGAAAACTGCTACCAAAAAAGTCACTGACAGCCCATGGTACGGCCCTGACAGAGTCAAGTACTTGGGGCCATTCTCCGGCGAGCCCCCAAGCTACCTCACCGGGGAGTTCCCCGGTGACTACGGCTGGGACACCGCCGGACTCTCAGCTGACCCAGAGACCTTCGCCAAAAACCGTGAGCTCGAAGTGATCGACTCCAGATGGGCCATGCTCGGAGCTCTTGGATGCGTTTTCCCAGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAAGCCGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACCCAAGTGGTGTTGATGGGCGCAGTTGAGGGATACAGAATTGCCGGTGGTCCCCTCGGAGAGGTGACCGACCCACTTTACCCCGGCGGAAGCTTCGACCCATTGGGCCTTGCCGACGACCCAGAAGCCTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTCCAGGCCATCGTCACCGGTAAGGGACCATTGGAGAACCTTGCCGACCACCTTGCGGACCCAGTCGCCAACAATGCCTGGAACTATGCCACAAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

264

Amino Acids

28.04

Weight (kDa)

4.94

Isoelectric Point (pI)

21.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	63 - 230	4.1e-49	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	237, 352, 417, 567, 734
AcoI	YGGCCR	2 cut(s)	468, 651
AcuI	CTGAAG	1 cut(s)	391
AfaI	GTAC	2 cut(s)	143, 164
AfiI	CCNNNNNNNGG	6 cut(s)	143, 179, 205, 445, 541, 733
AgeI	ACCGGT	1 cut(s)	695
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	681, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
Alw21I	GWGCWC	5 cut(s)	285, 322, 345, 621, 636
Alw26I	GTCTC	2 cut(s)	254, 425
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	8 cut(s)	145, 170, 306, 390, 468, 586, 651, 684
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	8 cut(s)	146, 170, 306, 448, 530, 586, 704, 736
AsuC2I	CCSGG	6 cut(s)	62, 63, 205, 216, 564, 783
AsuHPI	GGTGA	5 cut(s)	193, 230, 556, 637, 685
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	4 cut(s)	448, 530, 704, 736
BalI	TGGCCA	2 cut(s)	470, 653
BanII	GRGCYC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
Bbv12I	GWGCWC	5 cut(s)	285, 322, 345, 621, 636
BccI	CCATC	4 cut(s)	297, 479, 490, 695
BceAI	ACGGC	4 cut(s)	32, 160, 241, 362
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	2 cut(s)	683, 757
BciVI	GTATCC	1 cut(s)	506
BcnI	CCSGG	6 cut(s)	62, 63, 205, 216, 564, 783
BcoDI	GTCTC	2 cut(s)	254, 425
BfaI	CTAG	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	8 cut(s)	62, 63, 205, 216, 564, 683, 757, 783
Bme18I	GGWCC	4 cut(s)	448, 530, 704, 736
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	8 cut(s)	146, 170, 306, 448, 530, 586, 704, 736
BmiI	GGNNCC	6 cut(s)	67, 171, 397, 532, 705, 738
BmrFI	CCNGG	8 cut(s)	62, 63, 205, 216, 564, 683, 757, 783
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	2 cut(s)	317, 471
BmuI	ACTGGG	1 cut(s)	734
BpmI	CTGGAG	1 cut(s)	283
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	605, 620
BpuMI	CCSGG	6 cut(s)	62, 63, 205, 216, 564, 783
BsaI	GGTCTC	2 cut(s)	254, 425
BsaJI	CCNNGG	8 cut(s)	12, 60, 61, 137, 204, 214, 535, 562
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 179, 205, 445, 541, 733
Bse118I	RCCGGY	3 cut(s)	38, 524, 695
Bse1I	ACTGG	1 cut(s)	740
BseBI	CCWGG	2 cut(s)	683, 757
BseDI	CCNNGG	8 cut(s)	12, 60, 61, 137, 204, 214, 535, 562
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	6 cut(s)	143, 179, 205, 445, 541, 733
BseMII	CTCAG	2 cut(s)	261, 606
BseNI	ACTGG	1 cut(s)	740
BseYI	CCCAGC	1 cut(s)	228
BshFI	GGCC	8 cut(s)	147, 172, 308, 392, 470, 588, 653, 686
BshTI	ACCGGT	1 cut(s)	695
BsiHKAI	GWGCWC	5 cut(s)	285, 322, 345, 621, 636
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	4 cut(s)	245, 334, 516, 717
BslI	CCNNNNNNNGG	6 cut(s)	143, 179, 205, 445, 541, 733
BsmAI	GTCTC	2 cut(s)	254, 425
BsmFI	GGGAC	4 cut(s)	245, 334, 516, 717
BsnI	GGCC	8 cut(s)	147, 172, 308, 392, 470, 588, 653, 686
Bso31I	GGTCTC	2 cut(s)	254, 425
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
Bsp143I	GATC	2 cut(s)	291, 402
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp19I	CCATGG	2 cut(s)	12, 137
BspACI	CCGC	5 cut(s)	237, 352, 417, 567, 734
BspANI	GGCC	8 cut(s)	147, 172, 308, 392, 470, 588, 653, 686
BspCNI	CTCAG	2 cut(s)	260, 607
BspLI	GGNNCC	6 cut(s)	67, 171, 397, 532, 705, 738
BspTNI	GGTCTC	2 cut(s)	254, 425
BsrFI	RCCGGY	3 cut(s)	38, 524, 695
BsrI	ACTGG	1 cut(s)	740
BssAI	RCCGGY	3 cut(s)	38, 524, 695
BssECI	CCNNGG	8 cut(s)	12, 60, 61, 137, 204, 214, 535, 562
BssMI	GATC	2 cut(s)	291, 402
BssT1I	CCWWGG	2 cut(s)	12, 137
Bst2UI	CCWGG	2 cut(s)	683, 757
Bst4CI	ACNGT	2 cut(s)	278, 359
Bst6I	CTCTTC	2 cut(s)	28, 85
BstC8I	GCNNGC	2 cut(s)	40, 185
BstDEI	CTNAG	2 cut(s)	247, 615
BstDSI	CCRYGG	2 cut(s)	12, 137
BstEII	GGTNACC	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	2 cut(s)	294, 405
BstMAI	GTCTC	2 cut(s)	254, 425
BstMBI	GATC	2 cut(s)	291, 402
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 44, 476, 752
BstNI	CCWGG	2 cut(s)	683, 757
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	8 cut(s)	60, 61, 203, 214, 562, 681, 755, 781
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	8 cut(s)	147, 172, 308, 392, 470, 588, 653, 686
BtgI	CCRYGG	2 cut(s)	12, 137
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	40, 185
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	3 cut(s)	38, 524, 695
Cfr13I	GGNCC	8 cut(s)	146, 170, 306, 448, 530, 586, 704, 736
Cfr9I	CCCGGG	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	142, 163
CspAI	ACCGGT	1 cut(s)	695
CspCI	CAANNNNNGTGG	2 cut(s)	757, 792
CviAII	CATG	7 cut(s)	13, 100, 138, 310, 452, 655, 664
CviQI	GTAC	2 cut(s)	142, 163
DdeI	CTNAG	2 cut(s)	247, 615
DpnI	GATC	2 cut(s)	293, 404
DpnII	GATC	2 cut(s)	291, 402
EaeI	YGGCCR	2 cut(s)	468, 651
Eam1104I	CTCTTC	2 cut(s)	28, 85
EarI	CTCTTC	2 cut(s)	28, 85
EciI	GGCGGA	1 cut(s)	582
Ecl136II	GAGCTC	5 cut(s)	283, 320, 343, 619, 634
Eco130I	CCWWGG	2 cut(s)	12, 137
Eco24I	GRGCYC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
Eco31I	GGTCTC	2 cut(s)	254, 425
Eco47I	GGWCC	4 cut(s)	448, 530, 704, 736
Eco53kI	GAGCTC	5 cut(s)	283, 320, 343, 619, 634
Eco57I	CTGAAG	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	544
EcoICRI	GAGCTC	5 cut(s)	283, 320, 343, 619, 634
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoO65I	GGTNACC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	681, 755
EcoT14I	CCWWGG	2 cut(s)	12, 137
EcoT38I	GRGCYC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
ErhI	CCWWGG	2 cut(s)	12, 137
FaeI	CATG	7 cut(s)	16, 103, 141, 313, 455, 658, 667
FaiI	YATR	8 cut(s)	14, 101, 139, 311, 453, 656, 665, 765
FaqI	GGGAC	4 cut(s)	245, 334, 516, 717
FatI	CATG	7 cut(s)	12, 99, 137, 309, 451, 654, 663
FauI	CCCGC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	8 cut(s)	147, 172, 308, 392, 470, 588, 653, 686
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	7 cut(s)	16, 103, 141, 313, 455, 658, 667
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	4 cut(s)	156, 243, 296, 672
HphI	GGTGA	5 cut(s)	193, 230, 556, 637, 685
Hpy188I	TCNGA	3 cut(s)	83, 317, 539
Hpy188III	TCNNGA	3 cut(s)	300, 422, 637
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	4 cut(s)	43, 274, 622, 639
HpyCH4III	ACNGT	2 cut(s)	278, 359
HpyCH4V	TGCA	2 cut(s)	52, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 44, 476, 752
HpyF3I	CTNAG	2 cut(s)	247, 615
Hsp92II	CATG	7 cut(s)	16, 103, 141, 313, 455, 658, 667
HspAI	GCGC	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	291, 402
LmnI	GCTCC	4 cut(s)	65, 317, 395, 631
LweI	GCATC	2 cut(s)	317, 471
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	4 cut(s)	124, 218, 544, 691
MalI	GATC	2 cut(s)	293, 404
MboI	GATC	2 cut(s)	291, 402
MboII	GAAGA	3 cut(s)	15, 102, 397
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
MlsI	TGGCCA	2 cut(s)	470, 653
MluCI	AATT	1 cut(s)	519
MluNI	TGGCCA	2 cut(s)	470, 653
MlyI	GAGTC	3 cut(s)	165, 237, 290
MnlI	CCTC	6 cut(s)	96, 209, 406, 502, 535, 545
Mox20I	TGGCCA	2 cut(s)	470, 653
MroNI	GCCGGC	1 cut(s)	38
MscI	TGGCCA	2 cut(s)	470, 653
Msp20I	TGGCCA	2 cut(s)	470, 653
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	8 cut(s)	62, 63, 205, 216, 564, 683, 757, 783
MvaI	CCWGG	2 cut(s)	683, 757
MwoI	GCNNNNNNNGC	4 cut(s)	14, 44, 476, 752
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	6 cut(s)	62, 63, 205, 216, 564, 783
NcoI	CCATGG	2 cut(s)	12, 137
NdeII	GATC	2 cut(s)	291, 402
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	7 cut(s)	16, 103, 141, 313, 455, 658, 667
NlaIV	GGNNCC	6 cut(s)	67, 171, 397, 532, 705, 738
NmuCI	GTSAC	4 cut(s)	124, 218, 544, 691
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 375
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	672
PflFI	GACNNNGTC	2 cut(s)	155, 740
PfoI	TCCNGGA	1 cut(s)	781
PinAI	ACCGGT	1 cut(s)	695
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	164, 237, 290
PpsI	GAGTC	3 cut(s)	164, 237, 290
Psp124BI	GAGCTC	5 cut(s)	285, 322, 345, 621, 636
Psp6I	CCWGG	2 cut(s)	681, 755
PspEI	GGTNACC	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	2 cut(s)	681, 755
PspN4I	GGNNCC	6 cut(s)	67, 171, 397, 532, 705, 738
PspPI	GGNCC	8 cut(s)	146, 170, 306, 448, 530, 586, 704, 736
PsuI	RGATCY	1 cut(s)	402
PsyI	GACNNNGTC	2 cut(s)	155, 740
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	143, 164
RsaNI	GTAC	2 cut(s)	142, 163
SacI	GAGCTC	5 cut(s)	285, 322, 345, 621, 636
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	291, 402
Sau96I	GGNCC	8 cut(s)	146, 170, 306, 448, 530, 586, 704, 736
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	3 cut(s)	165, 237, 290
ScrFI	CCNGG	8 cut(s)	62, 63, 205, 216, 564, 683, 757, 783
SduI	GDGCHC	7 cut(s)	189, 285, 322, 345, 400, 621, 636
SfaNI	GCATC	2 cut(s)	317, 471
SinI	GGWCC	4 cut(s)	448, 530, 704, 736
SmaI	CCCGGG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	620, 635
SmoI	CTYRAG	2 cut(s)	620, 635
Sse9I	AATT	1 cut(s)	519
SsiI	CCGC	5 cut(s)	237, 352, 417, 567, 734
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	5 cut(s)	285, 322, 345, 621, 636
StyD4I	CCNGG	8 cut(s)	60, 61, 203, 214, 562, 681, 755, 781
StyI	CCWWGG	2 cut(s)	12, 137
TaaI	ACNGT	2 cut(s)	278, 359
TaqI	TCGA	4 cut(s)	285, 294, 423, 576
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	1 cut(s)	519
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	672
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	4 cut(s)	124, 218, 544, 691
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	4 cut(s)	124, 218, 544, 691
TspGWI	ACGGA	1 cut(s)	102
TspMI	CCCGGG	1 cut(s)	61
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	2 cut(s)	155, 740
VpaK11BI	GGWCC	4 cut(s)	448, 530, 704, 736
XagI	CCTNNNNNAGG	1 cut(s)	539
XmaI	CCCGGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	441
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.