Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Reverse (-)

10479007 .. 10486824

Gene Structure 7818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3537 bp

ATGGTTGTGAACGCGAAAGACTCGACGGTTCCAACGATGGAAGACTTCAAGGAGCTTCACAATCTCGTTACTCATCATATAGAGTCTTTCGATTACATGACACTGAAAGGACTCGATGTTATGTTCAATCGAATCAAACCCGTTTCTGTTTACGATCCAAACACCGAGAATGAATTGAGCATTTGGTTAGAAAATCCTCTAGTATTTGCTCCACAGAAGGAGAGTTTTAAATCAACATCAAGGAAAGAGCCTTTGCTTCCCTTTGAGTGTAGGCAAGCGAAGATTTCGTACACAGGAACGTTTATGGCTGATGTTTGCTTTAAGTATAATGATGGAGTCGTTGTTAGAGACAAGTTTGATTTTGGGCAATTTCCTATTATGCTCATGTCAAAGCTTTGTAGCTTAAAGGGTGCTGATTGCCGGAAACTGTTAAAGTGTAAAGAGTCAACTTCTGAAATGGGAGGGTACTTTATTTTGAATGGGATTGAGAGAGTGTTTCGATGTGTTATTGCACCAAAGCGGAACCATCCAACAAGTATGATTCGGAACTCATTCCGTGATCGTAAGGAAGGATACTCTAGCAAGGCAGTTGTCACTAGGTGTGTTAGGGACGACCAGTCATCTGTTACTGTTAAACTGTATTATCTTCGCAATGGAAGTGCCAGAGTTGGATTTTGGATAGTGGGAAGGGAATATTTGCTTCCTGTCGGCCTTGTTCTCAAGGCTCTAACGAATTCCTGCGATGAGGAAATATACGAAAGCCTGAACTGTTGCTACAGTGAGCATTACGGAAGAGGGGATGGAGCTATTGGAACCCAACTTGTTCGTGAGAGAGCCAAAATTATTCTTGATGAAGTTCGAGACTTGGGTCTTTTTACCCGTGAACAGTGCCGGAAGCACTTAGGACAGCATTTTCAACCTGTTCTTGATGGGGTAAAAAAAGAAAGCCTTTCTATCGTTGCTGAAGCTGTGCTCAGGGATTATTTATTTGTTCACCTTGACAATGATCACGACAAGTTCAATTTGCTCATCTTCATAATTCAGAAGCTCTATTCTCTGGTGGATCAGACTTCTTTACCTGACAATCCGGATTCTTTGCAAAATCAGGAAATTTTAGTCCCAGGTCACGTTATAACTATTTACCTCAAGGAAAAACTTGAAGAATGGCTGCGGAAGTGTAAAAGTCTTCTTAAAGATGAGTTGGATAACACGAACTCAAAATTTTCCTTTGAAAGCCTTGCTGATGTCAAGAAGCTTATTAACAAAAATCCTCCCAGGAGTATTGGTACGTCAATTGAAACATTGTTAAAGACAGGAGCGTTGAAAACACAGTCTGGTTTGGATTTACAGCAGAGAGCAGGTTACACTGTTCAGGCTGAGAGACTGAACTTTCTCCGTTTCCTTTCATTTTTCCGGGCGGTTCATCGAGGTGCTTCTTTTGCTGGACTTCGTACAACAACTGTGAGGAAGCTGCTTCCTGAATCTTGGGGTTTTCTTTGCCCTGTTCACACTCCTGATGGAACACCTTGTGGATTACTGAATCATATGACTCGTACTAGCCGAATCACTTCTCAGTTCGATTCCAAGGGAAACATCAGAGATTTTCTGAAAATAAGAAAGTCAGTTGTTGATGTTCTTACTGGGGCGGGTATGGTACCTTCATTGCCAAAGCTAGTACGAGCTGGACCACCAAAAGTCATCCATGTTCTTTTAGATGGTCAAGTTGTAGGCACGCTATCTTCTAACCTAGTCACGAAAGTTGTCTCTTATATACGGAGACTGAAAGTGGAGGCTCCTTCAGTGATTCCTGAAGACCTCGAAGTGGGATACGTACCTACAAGCATGGGTGGATCTTACCCTGGATTGTATTTGGCATCATGTCCCGCAAGATTCATTAGGCCTGTTAAAAATATATCTATACCTTCTGATAATATTGAACTGATTGGACCATTTGAACAGGTTTTTATGGAAATAAGCTGTCCTGATGGTGGAAATGGAGGAAGGAATAACTCTTCCCTAGCAACTCACGAGGAAATTCATCCAACCGGGATGATAAGTGTGGTTGCTAATCTTACACCTTGGTCAGATCATAACCAAAGTCCCCGTAACATGTATCAGTGTCAGATGGCGAAACAAACCATGGCGTACTCTACTCAAGCACTCCAATTTCGTGCCGACCAGAAGATTTACCACCTGCAGACTCCTCAATCCCCTGTGGTCCGCACAAAAACATACACCACTTACAGTATTGATGAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGGATTTGATATGGAAGACGCGATGATTTTGAACAAATCATCTGTGGAGCGGGGAATGTGCCATGGGCAAATATACCAGACAGAAAATATTGATCTTTCAGATCAGAATAGCCGATTTGATAGTGGTTCTAAAAGTTTTAGGAGGAGTACTAACAAAGCAGAACATTTTCGTATCGATGCTGATGGGTTACCATCTGTTGGACAGAAATTATATCCAGATGAGCCGTATTGTAGTATCTATGATGAGGTAACTAACAAAACAAGGCACATGAAGCGTAAAGGTACCGACCCTGTCATAGTTGACTTTGTCTCTGTCGACATGAAAAGCAAGAAACATCCTCAAAGGGCGAATATTCGTTTCCGGCATGCCAGAAACCCCATAATCGGTGACAAGTTCAGCAGTAGACATGGGCAAAAGGGTGTTTGTTCTCAATTGTGGCCTGATATTGACATGCCATTTAATGGAGTTACTGGAATGCGTCCAGATCTCATCATTAACCCGCATGCTTTCCCATCAAGAATGACAATTGCTATGCTTTTGGAATCTATTGCTGCTAAGGGAGGTAGTTTGCATGGAAAGTTTGTAGATGCAACACCGTTTCGTGATGCAGTAAAAAAAACAAACGGAGAAGAGGAGAGCAAGTCCAGTTTGCTTGTTGATGATCTTGGCTCCATGTTAAAGGAAAAAGGGTTCAACCATTATGGTACCGAGACATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGGTTAGATCTACGGGACAAGTGGATCAGCTAACTCATCAGCCAATAAAGGGAAGAAAACGAGGTGGTGGGATTCGGTTTGGTGAAATGGAGCGAGACTCACTACTTGCTCATGGAGCCTCCTATCTATTACACGACAGGCTTCATACATCTTCAGATCACCACATTGCAGATGTGTGTTCGCTATGTGGAAGCTTGCTCACATCATCTGTTGTGAACGTTCAACAGAAGAAGCTTATTCAAGAAATTGGAAAGTTACCTCCTGGTAGAACTCCAAAGAAGGTAACTTGCTATTCTTGCAAGACAAGTAAAGGCATGGAAACAGTTGCAATGCCCTATGTGTTCAGGTACTTGGCTGCAGAGTTGGCTTCAATGAATATTAAGATGACTCTTCAGTTAAGCGATAGAGAAGGAGTAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1178

Amino Acids

132.38

Weight (kDa)

8.94

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	21 - 412	1.7e-26	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	194 - 371	1e-09	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	459 - 522	2.6e-25	RNA polymerase Rpb2, domain 3
RNA_pol_Rpa2_4	PF06883	576 - 633	3.6e-18	RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb2_6	PF00562	688 - 1058	1.2e-114	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1060 - 1169	1.7e-21	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1133
AarI	CACCTGC	1 cut(s)	2202
Acc36I	ACCTGC	2 cut(s)	1349, 2202
Acc65I	GGTACC	3 cut(s)	1654, 2582, 3005
AccB1I	GGYRCC	3 cut(s)	1654, 2582, 3005
AccB7I	CCANNNNNTGG	2 cut(s)	2498, 2762
AccBSI	CCGCTC	1 cut(s)	2350
AccI	GTMKAC	2 cut(s)	2616, 2704
AccII	CGCG	2 cut(s)	14, 2321
AccIII	TCCGGA	1 cut(s)	1087
AciI	CCGC	8 cut(s)	520, 1171, 1418, 1646, 1884, 2221, 2350, 2801
AclI	AACGTT	2 cut(s)	299, 3330
AclWI	GGATC	4 cut(s)	149, 1071, 1858, 3144
AcsI	RAATTY	5 cut(s)	733, 1110, 1220, 2034, 3107
AcuI	CTGAAG	6 cut(s)	984, 1782, 1830, 3065, 3249, 3488
AdeI	CACNNNGTG	2 cut(s)	600, 1529
AfiI	CCNNNNNNNGG	6 cut(s)	1822, 1988, 2498, 2684, 2762, 3161
AflIII	ACRYGT	1 cut(s)	2109
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	5 cut(s)	1120, 1274, 1858, 3111, 3373
AloI	GAACNNNNNNTCC	2 cut(s)	2975, 3007
Alw21I	GWGCWC	1 cut(s)	975
AlwI	GGATC	4 cut(s)	149, 1071, 1858, 3144
AlwNI	CAGNNNCTG	1 cut(s)	3085
Aor13HI	TCCGGA	1 cut(s)	1087
AoxI	GGCC	4 cut(s)	709, 1898, 2738, 3065
ApeKI	GCWGC	4 cut(s)	1168, 1471, 2852, 3467
ApoI	RAATTY	5 cut(s)	733, 1110, 1220, 2034, 3107
Asp700I	GAANNNNTTC	3 cut(s)	551, 1567, 2466
Asp718I	GGTACC	3 cut(s)	1654, 2582, 3005
AspS9I	GGNCC	4 cut(s)	1685, 1946, 2218, 3065
AsuC2I	CCSGG	2 cut(s)	1415, 2047
AsuHPI	GGTGA	4 cut(s)	986, 2699, 3206, 3263
AvaII	GGWCC	3 cut(s)	1685, 1946, 2218
BanI	GGYRCC	3 cut(s)	1654, 2582, 3005
BarI	GAAGNNNNNNTAC	4 cut(s)	272, 304, 1642, 1674
BauI	CACGAG	1 cut(s)	2027
BbsI	GAAGAC	4 cut(s)	48, 1178, 1818, 2322
Bbv12I	GWGCWC	1 cut(s)	975
BbvI	GCAGC	4 cut(s)	1155, 1458, 2839, 3454
BceAI	ACGGC	1 cut(s)	2509
BciT130I	CCWGG	5 cut(s)	1122, 1276, 1860, 3113, 3375
BciVI	GTATCC	2 cut(s)	566, 1820
BclI	TGATCA	1 cut(s)	1006
BcnI	CCSGG	2 cut(s)	1415, 2047
BfaI	CTAG	7 cut(s)	200, 579, 597, 1557, 1673, 1748, 2018
BfmI	CTRYAG	4 cut(s)	775, 2195, 2262, 3468
BfuAI	ACCTGC	2 cut(s)	1349, 2202
BfuI	GTATCC	2 cut(s)	566, 1820
BglII	AGATCT	2 cut(s)	2785, 3119
BisI	GCNGC	4 cut(s)	1169, 1472, 2853, 3468
BlsI	GCNGC	4 cut(s)	1170, 1473, 2854, 3469
BmcAI	AGTACT	1 cut(s)	2449
Bme1390I	CCNGG	7 cut(s)	1122, 1276, 1415, 1860, 2047, 3113, 3375
Bme18I	GGWCC	3 cut(s)	1685, 1946, 2218
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmgT120I	GGNCC	4 cut(s)	1685, 1946, 2218, 3065
BmrFI	CCNGG	7 cut(s)	1122, 1276, 1415, 1860, 2047, 3113, 3375
BmrI	ACTGGG	1 cut(s)	1650
BmsI	GCATC	4 cut(s)	1883, 2467, 2878, 2896
BmuI	ACTGGG	1 cut(s)	1650
BoxI	GACNNNNGTC	1 cut(s)	867
BpiI	GAAGAC	4 cut(s)	48, 1178, 1818, 2322
BplI	GAGNNNNNCTC	2 cut(s)	3194, 3226
Bpu10I	CCTNAGC	2 cut(s)	974, 2856
BpuEI	CTTGAG	3 cut(s)	704, 1130, 2139
BpuMI	CCSGG	2 cut(s)	1415, 2047
Bsa29I	ATCGAT	1 cut(s)	2475
BsaAI	YACGTR	1 cut(s)	1831
BsaBI	GATNNNNATC	1 cut(s)	2256
BsaI	GGTCTC	1 cut(s)	3103
BsaJI	CCNNGG	7 cut(s)	1120, 1274, 1584, 1858, 2078, 2139, 2362
BsaWI	WCCGGW	1 cut(s)	1087
BsaXI	ACNNNNNCTCC	6 cut(s)	327, 357, 1270, 1300, 2927, 2957
Bsc4I	CCNNNNNNNGG	6 cut(s)	1822, 1988, 2498, 2684, 2762, 3161
Bse1I	ACTGG	4 cut(s)	616, 1645, 2776, 2946
Bse3DI	GCAATG	4 cut(s)	658, 1661, 3276, 3447
Bse8I	GATNNNNATC	1 cut(s)	2256
BseAI	TCCGGA	1 cut(s)	1087
BseBI	CCWGG	5 cut(s)	1122, 1276, 1860, 3113, 3375
BseCI	ATCGAT	1 cut(s)	2475
BseDI	CCNNGG	7 cut(s)	1120, 1274, 1584, 1858, 2078, 2139, 2362
BseGI	GGATG	6 cut(s)	526, 805, 1698, 2038, 2055, 2635
BseJI	GATNNNNATC	1 cut(s)	2256
BseLI	CCNNNNNNNGG	6 cut(s)	1822, 1988, 2498, 2684, 2762, 3161
BseMI	GCAATG	4 cut(s)	658, 1661, 3276, 3447
BseMII	CTCAG	4 cut(s)	988, 1368, 1586, 3114
BseNI	ACTGG	4 cut(s)	616, 1645, 2776, 2946
BseRI	GAGGAG	3 cut(s)	2193, 2458, 2948
BseXI	GCAGC	4 cut(s)	1155, 1458, 2839, 3454
Bsh1236I	CGCG	2 cut(s)	14, 2321
BshFI	GGCC	4 cut(s)	711, 1900, 2740, 3067
BshNI	GGYRCC	3 cut(s)	1654, 2582, 3005
BshVI	ATCGAT	1 cut(s)	2475
BsiHKAI	GWGCWC	1 cut(s)	975
BsiSI	CCGG	6 cut(s)	421, 892, 1088, 1414, 2046, 2662
BslFI	GGGAC	6 cut(s)	623, 1103, 1866, 2085, 2281, 3141
BslI	CCNNNNNNNGG	6 cut(s)	1822, 1988, 2498, 2684, 2762, 3161
BsmFI	GGGAC	6 cut(s)	623, 1103, 1866, 2085, 2281, 3141
BsmI	GAATGC	1 cut(s)	2781
BsnI	GGCC	4 cut(s)	711, 1900, 2740, 3067
Bso31I	GGTCTC	1 cut(s)	3103
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp13I	TCCGGA	1 cut(s)	1087
Bsp19I	CCATGG	2 cut(s)	2139, 2362
BspACI	CCGC	8 cut(s)	520, 1171, 1418, 1646, 1884, 2221, 2350, 2801
BspANI	GGCC	4 cut(s)	711, 1900, 2740, 3067
BspCNI	CTCAG	4 cut(s)	987, 1369, 1585, 3113
BspDI	ATCGAT	1 cut(s)	2475
BspEI	TCCGGA	1 cut(s)	1087
BspFNI	CGCG	2 cut(s)	14, 2321
BspMAI	CTGCAG	2 cut(s)	2199, 3472
BspMI	ACCTGC	2 cut(s)	1349, 2202
BspPI	GGATC	4 cut(s)	149, 1071, 1858, 3144
BspT107I	GGYRCC	3 cut(s)	1654, 2582, 3005
BspTNI	GGTCTC	1 cut(s)	3103
BsrBI	CCGCTC	1 cut(s)	2350
BsrDI	GCAATG	4 cut(s)	658, 1661, 3276, 3447
BsrI	ACTGG	4 cut(s)	616, 1645, 2776, 2946
BssECI	CCNNGG	7 cut(s)	1120, 1274, 1584, 1858, 2078, 2139, 2362
BssSI	CACGAG	1 cut(s)	2027
BssT1I	CCWWGG	4 cut(s)	1584, 2078, 2139, 2362
Bst2BI	CACGAG	1 cut(s)	2027
Bst2UI	CCWGG	5 cut(s)	1122, 1276, 1860, 3113, 3375
Bst6I	CTCTTC	4 cut(s)	787, 2017, 2925, 3507
BstAPI	GCANNNNNTGC	1 cut(s)	2282
BstBAI	YACGTR	1 cut(s)	1831
BstC8I	GCNNGC	5 cut(s)	276, 1733, 2667, 2805, 3308
BstDEI	CTNAG	6 cut(s)	901, 974, 1377, 1572, 2856, 3100
BstDSI	CCRYGG	2 cut(s)	2139, 2362
BstEII	GGTNACC	1 cut(s)	2487
BstF5I	GGATG	6 cut(s)	526, 805, 1698, 2038, 2055, 2635
BstFNI	CGCG	2 cut(s)	14, 2321
BstMWI	GCNNNNNNNGC	7 cut(s)	1439, 2282, 2291, 2572, 3227, 3408, 3476
BstNI	CCWGG	5 cut(s)	1122, 1276, 1860, 3113, 3375
BstNSI	RCATGY	4 cut(s)	2113, 2669, 2755, 2807
BstPAI	GACNNNNGTC	1 cut(s)	867
BstPI	GGTNACC	1 cut(s)	2487
BstSCI	CCNGG	7 cut(s)	1120, 1274, 1413, 1858, 2045, 3111, 3373
BstSFI	CTRYAG	4 cut(s)	775, 2195, 2262, 3468
BstSNI	TACGTA	1 cut(s)	1831
BstUI	CGCG	2 cut(s)	14, 2321
BstV1I	GCAGC	4 cut(s)	1155, 1458, 2839, 3454
BstV2I	GAAGAC	4 cut(s)	48, 1178, 1818, 2322
BstX2I	RGATCY	3 cut(s)	1850, 2785, 3119
BstYI	RGATCY	3 cut(s)	1850, 2785, 3119
Bsu15I	ATCGAT	1 cut(s)	2475
BsuI	GTATCC	2 cut(s)	566, 1820
BsuRI	GGCC	4 cut(s)	711, 1900, 2740, 3067
BsuTUI	ATCGAT	1 cut(s)	2475
BtgI	CCRYGG	2 cut(s)	2139, 2362
BtgZI	GCGATG	2 cut(s)	756, 2336
BtsCI	GGATG	6 cut(s)	526, 805, 1698, 2038, 2055, 2635
BtsIMutI	CAGTG	6 cut(s)	101, 784, 893, 1365, 1806, 2123
BveI	ACCTGC	2 cut(s)	1349, 2202
Cac8I	GCNNGC	5 cut(s)	276, 1733, 2667, 2805, 3308
CaiI	CAGNNNCTG	1 cut(s)	3085
Cfr13I	GGNCC	4 cut(s)	1685, 1946, 2218, 3065
ClaI	ATCGAT	1 cut(s)	2475
CseI	GACGC	3 cut(s)	2327, 2768, 3077
DdeI	CTNAG	6 cut(s)	901, 974, 1377, 1572, 2856, 3100
DraI	TTTAAA	1 cut(s)	229
DraIII	CACNNNGTG	2 cut(s)	600, 1529
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	4 cut(s)	787, 2017, 2925, 3507
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	4 cut(s)	787, 2017, 2925, 3507
Eco105I	TACGTA	1 cut(s)	1831
Eco130I	CCWWGG	4 cut(s)	1584, 2078, 2139, 2362
Eco147I	AGGCCT	1 cut(s)	1900
Eco31I	GGTCTC	1 cut(s)	3103
Eco47I	GGWCC	3 cut(s)	1685, 1946, 2218
Eco57I	CTGAAG	6 cut(s)	984, 1782, 1830, 3065, 3249, 3488
Eco91I	GGTNACC	1 cut(s)	2487
EcoO109I	RGGNCCY	1 cut(s)	3065
EcoO65I	GGTNACC	1 cut(s)	2487
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	5 cut(s)	1120, 1274, 1858, 3111, 3373
EcoT14I	CCWWGG	4 cut(s)	1584, 2078, 2139, 2362
ErhI	CCWWGG	4 cut(s)	1584, 2078, 2139, 2362
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	6 cut(s)	623, 1103, 1866, 2085, 2281, 3141
FauI	CCCGC	4 cut(s)	1639, 1891, 2343, 2808
FauNDI	CATATG	1 cut(s)	1545
FbaI	TGATCA	1 cut(s)	1006
FblI	GTMKAC	2 cut(s)	2616, 2704
Fnu4HI	GCNGC	4 cut(s)	1169, 1472, 2853, 3468
FokI	GGATG	6 cut(s)	513, 812, 1685, 2025, 2062, 2622
Fsp4HI	GCNGC	4 cut(s)	1169, 1472, 2853, 3468
FspBI	CTAG	7 cut(s)	200, 579, 597, 1557, 1673, 1748, 2018
GluI	GCNGC	4 cut(s)	1169, 1472, 2853, 3468
HaeIII	GGCC	4 cut(s)	711, 1900, 2740, 3067
HapII	CCGG	6 cut(s)	421, 892, 1088, 1414, 2046, 2662
HgaI	GACGC	3 cut(s)	2327, 2768, 3077
HincII	GTYRAC	3 cut(s)	447, 2602, 2617
HindII	GTYRAC	3 cut(s)	447, 2602, 2617
HindIII	AAGCTT	4 cut(s)	392, 1253, 3304, 3344
HpaII	CCGG	6 cut(s)	421, 892, 1088, 1414, 2046, 2662
HphI	GGTGA	4 cut(s)	986, 2699, 3206, 3263
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	9 cut(s)	211, 563, 681, 1668, 1806, 1932, 1995, 3385, 3515
HpyCH4IV	ACGT	5 cut(s)	299, 1128, 1289, 1830, 3330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1439, 2282, 2291, 2572, 3227, 3408, 3476
HpyF3I	CTNAG	6 cut(s)	901, 974, 1377, 1572, 2856, 3100
HpySE526I	ACGT	5 cut(s)	299, 1128, 1289, 1830, 3330
Kpn2I	TCCGGA	1 cut(s)	1087
KpnI	GGTACC	3 cut(s)	1658, 2586, 3009
Ksp22I	TGATCA	1 cut(s)	1006
LmnI	GCTCC	9 cut(s)	52, 214, 803, 1316, 1798, 2347, 2975, 3202, 3227
Lsp1109I	GCAGC	4 cut(s)	1155, 1458, 2839, 3454
LweI	GCATC	4 cut(s)	1883, 2467, 2878, 2896
MaeI	CTAG	7 cut(s)	200, 579, 597, 1557, 1673, 1748, 2018
MaeII	ACGT	5 cut(s)	299, 1128, 1289, 1830, 3330
MbiI	CCGCTC	1 cut(s)	2350
MfeI	CAATTG	4 cut(s)	1293, 2277, 2732, 2826
MflI	RGATCY	3 cut(s)	1850, 2785, 3119
MhlI	GDGCHC	1 cut(s)	975
MlyI	GAGTC	9 cut(s)	14, 92, 105, 345, 452, 1543, 2194, 3203, 3493
MmeI	TCCRAC	6 cut(s)	56, 554, 649, 1182, 2066, 2479
MroI	TCCGGA	1 cut(s)	1087
MroXI	GAANNNNTTC	3 cut(s)	551, 1567, 2466
MslI	CAYNNNNRTG	1 cut(s)	1428
MspI	CCGG	6 cut(s)	421, 892, 1088, 1414, 2046, 2662
MspR9I	CCNGG	7 cut(s)	1122, 1276, 1415, 1860, 2047, 3113, 3375
MunI	CAATTG	4 cut(s)	1293, 2277, 2732, 2826
Mva1269I	GAATGC	1 cut(s)	2781
MvaI	CCWGG	5 cut(s)	1122, 1276, 1860, 3113, 3375
MvnI	CGCG	2 cut(s)	14, 2321
MwoI	GCNNNNNNNGC	7 cut(s)	1439, 2282, 2291, 2572, 3227, 3408, 3476
NciI	CCSGG	2 cut(s)	1415, 2047
NcoI	CCATGG	2 cut(s)	2139, 2362
NdeI	CATATG	1 cut(s)	1545
NmuCI	GTSAC	5 cut(s)	592, 1124, 1750, 2687, 3089
NspI	RCATGY	4 cut(s)	2113, 2669, 2755, 2807
PaeI	GCATGC	2 cut(s)	2669, 2807
PaqCI	CACCTGC	1 cut(s)	2202
PceI	AGGCCT	1 cut(s)	1900
PciI	ACATGT	1 cut(s)	2109
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 1558
PctI	GAATGC	1 cut(s)	2781
PdmI	GAANNNNTTC	3 cut(s)	551, 1567, 2466
PflFI	GACNNNGTC	3 cut(s)	2591, 2606, 3087
PflMI	CCANNNNNTGG	2 cut(s)	2498, 2762
PkrI	GCNGC	4 cut(s)	1170, 1473, 2854, 3469
PleI	GAGTC	9 cut(s)	14, 91, 105, 344, 451, 1543, 2194, 3203, 3493
PpsI	GAGTC	9 cut(s)	14, 91, 105, 344, 451, 1543, 2194, 3203, 3493
Ppu21I	YACGTR	1 cut(s)	1831
PscI	ACATGT	1 cut(s)	2109
PshAI	GACNNNNGTC	1 cut(s)	867
PsiI	TTATAA	1 cut(s)	1133
Psp1406I	AACGTT	2 cut(s)	299, 3330
Psp6I	CCWGG	5 cut(s)	1120, 1274, 1858, 3111, 3373
PspEI	GGTNACC	1 cut(s)	2487
PspGI	CCWGG	5 cut(s)	1120, 1274, 1858, 3111, 3373
PspPI	GGNCC	4 cut(s)	1685, 1946, 2218, 3065
PsrI	GAACNNNNNNTAC	2 cut(s)	758, 790
PstI	CTGCAG	2 cut(s)	2199, 3472
PstNI	CAGNNNCTG	1 cut(s)	3085
PsuI	RGATCY	3 cut(s)	1850, 2785, 3119
PsyI	GACNNNGTC	3 cut(s)	2591, 2606, 3087
RseI	CAYNNNNRTG	1 cut(s)	1428
SalI	GTCGAC	1 cut(s)	2615
SatI	GCNGC	4 cut(s)	1169, 1472, 2853, 3468
Sau96I	GGNCC	4 cut(s)	1685, 1946, 2218, 3065
ScaI	AGTACT	1 cut(s)	2449
SchI	GAGTC	9 cut(s)	14, 92, 105, 345, 452, 1543, 2194, 3203, 3493
ScrFI	CCNGG	7 cut(s)	1122, 1276, 1415, 1860, 2047, 3113, 3375
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	4 cut(s)	1883, 2467, 2878, 2896
SfcI	CTRYAG	4 cut(s)	775, 2195, 2262, 3468
SinI	GGWCC	3 cut(s)	1685, 1946, 2218
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	3 cut(s)	719, 1145, 2154
SmoI	CTYRAG	3 cut(s)	719, 1145, 2154
SnaBI	TACGTA	1 cut(s)	1831
SphI	GCATGC	2 cut(s)	2669, 2807
SseBI	AGGCCT	1 cut(s)	1900
SsiI	CCGC	8 cut(s)	520, 1171, 1418, 1646, 1884, 2221, 2350, 2801
SspI	AATATT	5 cut(s)	695, 1933, 2389, 2653, 3490
SspMI	CTAG	7 cut(s)	200, 579, 597, 1557, 1673, 1748, 2018
StuI	AGGCCT	1 cut(s)	1900
StyD4I	CCNGG	7 cut(s)	1120, 1274, 1413, 1858, 2045, 3111, 3373
StyI	CCWWGG	4 cut(s)	1584, 2078, 2139, 2362
TaiI	ACGT	5 cut(s)	302, 1131, 1292, 1833, 3333
TatI	WGTACW	1 cut(s)	2447
TscAI	CASTG	6 cut(s)	108, 784, 893, 1372, 1806, 2123
TseFI	GTSAC	5 cut(s)	592, 1124, 1750, 2687, 3089
TseI	GCWGC	4 cut(s)	1168, 1471, 2852, 3467
Tsp45I	GTSAC	5 cut(s)	592, 1124, 1750, 2687, 3089
TspGWI	ACGGA	5 cut(s)	545, 804, 1385, 1789, 2940
TspRI	CASTG	6 cut(s)	108, 784, 893, 1372, 1806, 2123
Tth111I	GACNNNGTC	3 cut(s)	2591, 2606, 3087
Van91I	CCANNNNNTGG	2 cut(s)	2498, 2762
VpaK11BI	GGWCC	3 cut(s)	1685, 1946, 2218
XapI	RAATTY	5 cut(s)	733, 1110, 1220, 2034, 3107
XceI	RCATGY	4 cut(s)	2113, 2669, 2755, 2807
XmiI	GTMKAC	2 cut(s)	2616, 2704
XmnI	GAANNNNTTC	3 cut(s)	551, 1567, 2466
XspI	CTAG	7 cut(s)	200, 579, 597, 1557, 1673, 1748, 2018
ZrmI	AGTACT	1 cut(s)	2449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.