Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Forward (+)

19874028 .. 19875400

Gene Structure 1373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G223000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGTCCAGATCTTATCATCAATCCACATGCATTTCCTTCAAGGATGACAATAGGAATGCTCTTGGAATCGATTGCTGCAAAGATGCTTCCTTGTTTTTTGTCACAAGGAGGTAGCTTGCATGGAGAATATGTTGACGCAACACCGTTTGCTAATTCAAAGAAGGCTCATGAAAAGACTCAACCAAAATCCGAAACCCTTGTTGATGAACTTGGTGAAATAGGGGTTTATGGAACCAAACTGACATGTGAGATCTTTATTGGTCCTGTTTATTATCAACGACTACAACATATGGTTTCAGACAAGTCAGGACGAAAGCAAGGTGGAGGTATACGTTTTGGTGAAATGGAACGAGATTCGTTGCTTGCGCATGGGGCAGCCTATCTATTGCATGATAGGCTTCATACATGTTCTGATTATCACATTGCTGCTGTATGTTCCACATGTGGAAGCATCCTAATACCCTCAGTCATCAAGCCAGAGAAACGGGTTGCGCGTGCAGTTAAGGGACTGCCCCCTGTAAGAGCTCCCAAGGTCTTCTGTCATGCTTGTGATACGAATAAAGGGGTGGAGACAGTTGCAATGCCCTATGTCTTCAAATACTTGGCTGCTGAGTTAGCAGCTATGAGCATAAAAATGACCCTCCAGCTAAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

220

Amino Acids

23.98

Weight (kDa)

8.79

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	331
AccII	CGCG	1 cut(s)	496
AflIII	ACRYGT	3 cut(s)	245, 407, 443
AgsI	TTSAA	3 cut(s)	42, 159, 598
AluBI	AGCT	4 cut(s)	117, 527, 623, 649
AluI	AGCT	4 cut(s)	117, 527, 623, 649
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	566
ApeKI	GCWGC	5 cut(s)	77, 377, 428, 608, 620
AspLEI	GCGC	2 cut(s)	370, 496
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	227, 353
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	2 cut(s)	529, 586
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	5 cut(s)	64, 389, 415, 595, 632
BcoDI	GTCTC	1 cut(s)	566
BglII	AGATCT	2 cut(s)	10, 252
BisI	GCNGC	5 cut(s)	78, 378, 429, 609, 621
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	5 cut(s)	79, 379, 430, 610, 622
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	2 cut(s)	75, 462
BpiI	GAAGAC	2 cut(s)	529, 586
BpmI	CTGGAG	1 cut(s)	629
Bpu1102I	GCTNAGC	1 cut(s)	650
Bsa29I	ATCGAT	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse3DI	GCAATG	2 cut(s)	423, 588
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	51, 453
BseMI	GCAATG	2 cut(s)	423, 588
BseMII	CTCAG	2 cut(s)	480, 603
BseXI	GCAGC	5 cut(s)	64, 389, 415, 595, 632
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	496
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	522
BsmI	GAATGC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	2 cut(s)	10, 252
Bsp1720I	GCTNAGC	1 cut(s)	650
BspCNI	CTCAG	2 cut(s)	479, 604
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	423, 588
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	10, 252
BssNAI	GTATAC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	531
Bst1107I	GTATAC	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	147, 577
BstC8I	GCNNGC	3 cut(s)	119, 366, 498
BstDEI	CTNAG	3 cut(s)	466, 612, 650
BstF5I	GGATG	2 cut(s)	51, 453
BstFNI	CGCG	1 cut(s)	496
BstHHI	GCGC	2 cut(s)	370, 496
BstKTI	GATC	2 cut(s)	13, 255
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	10, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 397, 617
BstNSI	RCATGY	4 cut(s)	32, 249, 411, 447
BstUI	CGCG	1 cut(s)	496
BstV1I	GCAGC	5 cut(s)	64, 389, 415, 595, 632
BstV2I	GAAGAC	2 cut(s)	529, 586
BstX2I	RGATCY	2 cut(s)	10, 252
BstYI	RGATCY	2 cut(s)	10, 252
BstZ17I	GTATAC	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	51, 453
Cac8I	GCNNGC	3 cut(s)	119, 366, 498
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	2 cut(s)	370, 496
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	71
CseI	GACGC	1 cut(s)	146
CviAII	CATG	9 cut(s)	29, 122, 170, 246, 371, 392, 408, 444, 545
CviJI	RGCY	9 cut(s)	117, 167, 380, 400, 478, 527, 608, 623, 649
CviKI_1	RGCY	9 cut(s)	117, 167, 380, 400, 478, 527, 608, 623, 649
DdeI	CTNAG	3 cut(s)	466, 612, 650
DpnI	GATC	2 cut(s)	12, 254
DpnII	GATC	2 cut(s)	10, 252
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	9 cut(s)	32, 125, 173, 249, 374, 395, 411, 447, 548
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	9 cut(s)	28, 121, 169, 245, 370, 391, 407, 443, 544
FauNDI	CATATG	1 cut(s)	291
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	78, 378, 429, 609, 621
FokI	GGATG	2 cut(s)	58, 440
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	5 cut(s)	78, 378, 429, 609, 621
FspI	TGCGCA	1 cut(s)	369
GlaI	GCGC	2 cut(s)	369, 495
GluI	GCNGC	5 cut(s)	78, 378, 429, 609, 621
GsuI	CTGGAG	1 cut(s)	629
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	370, 496
Hin1II	CATG	9 cut(s)	32, 125, 173, 249, 374, 395, 411, 447, 548
Hin6I	GCGC	2 cut(s)	368, 494
HinP1I	GCGC	2 cut(s)	368, 494
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	68, 178, 356
HphI	GGTGA	2 cut(s)	227, 353
Hpy166II	GTNNAC	2 cut(s)	136, 332
Hpy188I	TCNGA	3 cut(s)	193, 301, 415
Hpy188III	TCNNGA	3 cut(s)	8, 170, 309
Hpy8I	GTNNAC	2 cut(s)	136, 332
HpyAV	CCTTC	2 cut(s)	48, 157
HpyCH4III	ACNGT	2 cut(s)	147, 577
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	6 cut(s)	32, 80, 121, 391, 500, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 397, 617
HpyF3I	CTNAG	3 cut(s)	466, 612, 650
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	9 cut(s)	32, 125, 173, 249, 374, 395, 411, 447, 548
HspAI	GCGC	2 cut(s)	368, 494
Kzo9I	GATC	2 cut(s)	10, 252
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	5 cut(s)	21, 279, 294, 492, 531
Lsp1109I	GCAGC	5 cut(s)	64, 389, 415, 595, 632
LweI	GCATC	2 cut(s)	75, 462
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	2 cut(s)	12, 254
MboI	GATC	2 cut(s)	10, 252
MboII	GAAGA	2 cut(s)	529, 586
MflI	RGATCY	2 cut(s)	10, 252
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	104, 320, 475, 653
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	2 cut(s)	549, 635
Mva1269I	GAATGC	1 cut(s)	63
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	374, 397, 617
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	2 cut(s)	10, 252
NlaIII	CATG	9 cut(s)	32, 125, 173, 249, 374, 395, 411, 447, 548
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	102
NsbI	TGCGCA	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	4 cut(s)	32, 249, 411, 447
PagI	TCATGA	1 cut(s)	169
PciI	ACATGT	3 cut(s)	245, 407, 443
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	68, 356
PkrI	GCNGC	5 cut(s)	79, 379, 430, 610, 622
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	3 cut(s)	245, 407, 443
Psp124BI	GAGCTC	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	10, 252
RseI	CAYNNNNRTG	2 cut(s)	549, 635
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	5 cut(s)	78, 378, 429, 609, 621
Sau3AI	GATC	2 cut(s)	10, 252
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	529
SetI	ASST	9 cut(s)	115, 119, 325, 331, 337, 529, 537, 625, 651
SfaNI	GCATC	2 cut(s)	75, 462
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	549, 635
Sse9I	AATT	1 cut(s)	154
SstI	GAGCTC	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	147, 577
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	68, 356
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	5 cut(s)	77, 377, 428, 608, 620
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	3 cut(s)	186, 222, 392
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	4 cut(s)	32, 249, 411, 447
XmiI	GTMKAC	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.