Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Reverse (-)

35026728 .. 35042658

Gene Structure 15931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3504 bp

ATGCAGCAGAAGAGGAGAACCTCCGCCGGAGACTTAAGCCACTTGCGCGAGCTGTTCCGGCACCACATGGAGTCCTTCGATTACCTCATCACCGCCGGTCTTGGCGTCATGCTCCGTGACATCAAGCCCGTCCAAGTCCACAATCCTCACACCGGAGAAACCATAAGGATCTGGTTCGCTGATGATCCTATTCTAGGCCGACCTCAGAAGGATCGGAGTAGCGAGCCTCTCTATCCTTTTGAATGTCGACAGACTCGAATTTCCTACACGGGTAAATTGTTGGCAGACATTTACTTTCAGCGTGATGATAAGGCTCCTGTCAGAGAGCAGTTAAATTTTGGCCAGTTTCCCATCATGCTCATGTCAAAGTGTTGCAACTTAAGAGGTCATGATCCTCAGCAGCTAGTTTCTTGCAAAGAAGAGTCATCAGAAATGGGTGGCTACTTCATTTTGAATGGGCTCGAGAGAGTTATTCGACCTGTTATATTGCCGAAGCGGAACTATCCAATGAGTACGGTGCGCAATTCATTTCGTGATCGAAAGGAAGGATATACAGATAAAGCAGTTGTGATAAGATGTGTAAGGGATGATCAGTCTTCAGTAACAGTCAAATTGTATTACCTGCAAAACGGAAGTGCAAGACTTGGTGTTTGGATACAAGGGAAGGAGTTCTTGCTTCCTGTGGGTCTTATTTTAAAGGCTTTTATTGACACTCCTGATCGTGAAATTTTTGCGAGTTTGACATGCTGTTGTAACGAGAAATTTGAGAAAGAAAAAGGTGCTGTTGCCACTCAGCTTGTGGGTGAGAGGGCGCAAATTATTATAAATGAAGTGGCAGACTTGGGTCTTCGCACTCATCTTCAATGTCTAGAACACATTGGCGAGCACTTTCAACCTCTAATGGGTGGACTGGAGAATGAACCTTATTCAGTTGTTGGAGATGCCGTTCTCAAGGACTACATATTTGTTCACCTAGATAAGAATGAAGACAAATTCAATCTGCTCATATTCATGTTGCAGAAACTTTTTTCGCTTATGGATCAGACTTCAGTTCTCGACAACCCAGATTCCTTGCAAAATCAAGAAGTCTTACTCCCTGGCCATCTGATAACCATATATCTCAAGGAAAAATTAGAGGATTGGTTGCAAAGGACCAAAAAACTTCTTCAAGATGAGATGAAAAAGGAAAGCAACAATATCAATTTTGGCAGCGTCGATAGCTTAAAAAAGATTCTGGAAAAAAATCCTACAAGGCAAATCAGTATGGCGATTGAGAATATGTTGAAAACTGGAAGAATTAATACTCAAACAGGTCTAGATTTGCAGCAGAGAGCGGGCTTTACAGTTCAGGCAGAAAGGCTTAACTTTTTACGATTTTTATCGCATTTTCGTGCTGTTCATCGAGGGGCTTCATTTGCTGGGCTTCGCACCACAAGTGTGCGAAAATTGCTTCCCGAATCCTGGGGTTTCCTTTGCCCTGTGCATACACCTGATGGAGAGCCATGTGGCTTGTTGAACCATATGACTCGCACTTGTAGAATTACATCGTACTTTGATGCACAAGGGAATATTAGAGATTTCTCTAAGATTCGAATGTCTATTCTTAATGTTCTGATCGAAGTTGGAATGACACCTTCACTGCCAATGTTGGTTCATGCCGGTCCTCCTGCGGATCTTTCTGTTCTTTTAGATGGTCGTCTTGTTGGTTATATATCTTCCAAACAAGTTGAGAGAGTTGTGGCTCATTTAAGGAAGCTGAAAGTTTCAGCTGCTTCAGTGATTCCAGATGACTTGGAAGTGGGATACATTCCTCTCAGCATGGGTGGGGCATATCCTGGACTCTACCTTAACACTTCTCCTTCTAGATTTGTTCGGCCAGTTAAGAATATTTCGATTCCTGCTGTTGAAGGTCAAAATATTGAACTCATTGGGCCCTTTGAACAGGTGTTCATGGAAATAAGATGTCCTGATGGTCGAGATGGTGGAAGGAAAGATGCTTTCCCTGCAACTCATGAAGAAATTCATCCAACTGGGATGCTCAGTGTTGTTGCTAATCTTACTCCCTGGTCAGAACATAATCAGAGCCCACGAAATATGTACCAGTGTCAGATGGCAAAACAAACGATGGGTTTCTCATTACAAGCACTTTGCAATCGTGCAGATCAGAAGTTGTATCATCTGAAGACTCCTCAATCTCCCATCGTCCGCACAAAAACGTATACGAATTACTGTGTAGATGAATATCCAACGGGTACAAATGCAATCGTTGCTGTATTGTCGTATACCGGGTATGATATGGAGGATGCTATGATTCTGAGCAAGTCATCTGTAGATCGTGGAATGTTTCATGGACTAGTATATCAGACGGAATCCATTGACTTGTCTGCTACAAAGGGTAGTAAATCCCAGAGATCGTTCAGGAGAAGTACCACTGATAAGTCACATCATTCTTTGATCGATTCAGATGGTCTTCCTTATGTGGGTCAGACAATAAAACCAGATGAACCCTATTATAGCACTTATGATGAGATAAAAGGTGCCATAAGAACGACCAAACGAAAGGGGTCGGAGCCTGCTATTGTTGACTATGTTGCTATTGATGGGAAGAAGCATCTTCAGAAGGTGAACATAAGGTTTAGGCACCCTAGAAACCCGATAATTGGTGATAAATTTAGCAGCCGACATGGACAAAAAGGAGTTTGCTCCCAGTTGTGGCCTGACATTGATATGCCATTTTCTGGAGTTACGGGAATGCGACCAGATCTTATTATCAATCCACATGCGTTTCCTTCAAGAATGACAATAGCCATGCTTTTGGAGTCGGTTGCTGCAAAGGGTGGTAGCTTACATGGAAAATATGTTGATGCGACACCATTTGCTAATTCAGAGGAGAAAGTTAATGAAGAAACTAATGGAGAGAAATCCAAAACCCTTGTTGATGAACTTGGTGAAATGTTAAAGGTTAAAGGGTTTAATTACCATGGTACAGAGGTATTGTACAGTGGCGTCTATGGAACAGAACTCACGTGTGAAATCTTTATTGGTCCTGTTTACTATCAACGATTACGGCATATGGTTTCAGACAAATTTCAGGTTCGCTCTACTGGAATGGTAGATCAAGTCACACGCCAGCCTATCAAAGGACGAAAACGAGGTGGCGGTATACGTTTTGGTGAAATGGAGAGAGACTCCTTGCTTGCACATGGGGCAGCGTATTTGTTGCATGATAGACTTCATACATGTTCTGATTATCACATTGCTGACGTATGTTCCCTTTGTGGATCCATCCTAACAACCTCATCAGTCCAGCCACAAATACGGGTTCGTGAAATGCGGGGCTTGCCCCCTATGAGAGCTCCCAAGAAGGTGACTTGCCATGCATGTAACTCGAGTAAAGGGATGGAGACGGTTGCAATGCCTTATGTCTTTAGATATTTAGCAGCTGAGTTAGCAGCTATGAACATAAAACTGACCCTCCAGTTGAGCAATGCAACTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1168

Amino Acids

131.35

Weight (kDa)

8.79

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	18 - 398	8.6e-31	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	191 - 363	5.2e-10	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	451 - 514	1.2e-27	RNA polymerase Rpb2, domain 3
RNA_pol_Rpa2_4	PF06883	568 - 625	5.3e-21	RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb2_6	PF00562	683 - 1051	2.1e-121	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1053 - 1160	2e-21	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
Acc16I	TGCGCA	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	630
AccB1I	GGYRCC	3 cut(s)	60, 2537, 2640
AccB7I	CCANNNNNTGG	1 cut(s)	2738
AccBSI	CCGCTC	1 cut(s)	1334
AccI	GTMKAC	4 cut(s)	247, 2219, 2282, 3163
AccII	CGCG	1 cut(s)	48
AciI	CCGC	8 cut(s)	24, 93, 496, 1334, 1670, 2206, 3159, 3334
AclWI	GGATC	8 cut(s)	176, 179, 219, 386, 1047, 1680, 3276, 3289
AcoI	YGGCCR	3 cut(s)	340, 1099, 1874
AcsI	RAATTY	8 cut(s)	258, 334, 726, 761, 992, 2019, 2669, 3086
AcuI	CTGAAG	5 cut(s)	582, 1032, 1758, 2201, 2600
AcvI	CACGTG	1 cut(s)	3027
AcyI	GRCGYC	2 cut(s)	105, 3006
AfaI	GTAC	7 cut(s)	514, 1550, 2099, 2254, 2428, 2986, 2999
AfiI	CCNNNNNNNGG	9 cut(s)	152, 194, 902, 1461, 2480, 2660, 2712, 2738, 3140
AflII	CTTAAG	2 cut(s)	34, 379
AflIII	ACRYGT	2 cut(s)	3026, 3239
AhlI	ACTAGT	1 cut(s)	2353
AjnI	CCWGG	4 cut(s)	1096, 1460, 1834, 2063
AjuI	GAANNNNNNNTTGG	2 cut(s)	3024, 3056
AleI	CACNNNNGTG	1 cut(s)	1436
AloI	GAACNNNNNNTCC	2 cut(s)	930, 962
Alw21I	GWGCWC	2 cut(s)	888, 3358
Alw26I	GTCTC	3 cut(s)	24, 3180, 3398
AlwI	GGATC	8 cut(s)	176, 179, 219, 386, 1047, 1680, 3276, 3289
Ama87I	CYCGRG	2 cut(s)	461, 3388
AoxI	GGCC	6 cut(s)	196, 340, 1099, 1874, 1931, 2714
ApaI	GGGCCC	1 cut(s)	1935
ApoI	RAATTY	8 cut(s)	258, 334, 726, 761, 992, 2019, 2669, 3086
ArsI	GACNNNNNNTTYG	4 cut(s)	633, 665, 947, 979
AseI	ATTAAT	1 cut(s)	1299
Asp700I	GAANNNNTTC	2 cut(s)	668, 2019
AspLEI	GCGC	3 cut(s)	48, 522, 814
AspS9I	GGNCC	5 cut(s)	1152, 1661, 1931, 1932, 3044
AsuC2I	CCSGG	1 cut(s)	2287
AsuHPI	GGTGA	8 cut(s)	82, 815, 962, 2635, 2675, 2960, 3185, 3379
AsuII	TTCGAA	1 cut(s)	1591
AvaI	CYCGRG	2 cut(s)	461, 3388
AvaII	GGWCC	3 cut(s)	1152, 1661, 3044
BaeGI	GKGCMC	1 cut(s)	1935
BaeI	ACNNNNGTAYC	2 cut(s)	2976, 3009
BalI	TGGCCA	2 cut(s)	342, 1101
BamHI	GGATCC	1 cut(s)	3281
BanI	GGYRCC	3 cut(s)	60, 2537, 2640
BanII	GRGCYC	4 cut(s)	462, 1935, 2087, 3358
BarI	GAAGNNNNNNTAC	2 cut(s)	1285, 1317
BbrPI	CACGTG	1 cut(s)	3027
BbsI	GAAGAC	5 cut(s)	588, 839, 993, 2189, 2462
Bbv12I	GWGCWC	2 cut(s)	888, 3358
BbvCI	CCTCAGC	1 cut(s)	396
BceAI	ACGGC	2 cut(s)	929, 3083
BcgI	CGANNNNNNTGC	2 cut(s)	3369, 3403
BciT130I	CCWGG	4 cut(s)	1098, 1462, 1836, 2065
BciVI	GTATCC	2 cut(s)	648, 1796
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	2287
BcoDI	GTCTC	3 cut(s)	24, 3180, 3398
BcuI	ACTAGT	1 cut(s)	2353
BfaI	CTAG	8 cut(s)	194, 404, 869, 974, 1316, 1863, 2354, 2646
BfmI	CTRYAG	1 cut(s)	2328
BfrI	CTTAAG	2 cut(s)	34, 379
BfuAI	ACCTGC	1 cut(s)	630
BfuI	GTATCC	2 cut(s)	648, 1796
BglII	AGATCT	1 cut(s)	2761
Bme1390I	CCNGG	5 cut(s)	1098, 1462, 1836, 2065, 2287
Bme18I	GGWCC	3 cut(s)	1152, 1661, 3044
BmeT110I	CYCGRG	2 cut(s)	461, 3388
BmgT120I	GGNCC	5 cut(s)	1152, 1661, 1931, 1932, 3044
BmiI	GGNNCC	7 cut(s)	62, 315, 1933, 2539, 2571, 2642, 3283
BmrFI	CCNGG	5 cut(s)	1098, 1462, 1836, 2065, 2287
BmrI	ACTGGG	2 cut(s)	2040, 2701
BmsI	GCATC	7 cut(s)	931, 1546, 1984, 2025, 2293, 2620, 2854
BmuI	ACTGGG	2 cut(s)	2040, 2701
BoxI	GACNNNNGTC	1 cut(s)	843
BpiI	GAAGAC	5 cut(s)	588, 839, 993, 2189, 2462
BplI	GAGNNNNNCTC	2 cut(s)	3173, 3205
BpmI	CTGGAG	3 cut(s)	932, 2760, 3461
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	1591
BpuEI	CTTGAG	2 cut(s)	935, 1106
BpuMI	CCSGG	1 cut(s)	2287
Bsa29I	ATCGAT	1 cut(s)	2457
BsaAI	YACGTR	1 cut(s)	3027
BsaBI	GATNNNNATC	2 cut(s)	1378, 2241
BsaHI	GRCGYC	2 cut(s)	105, 3006
BsaJI	CCNNGG	4 cut(s)	1096, 1461, 2063, 2980
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	4 cut(s)	930, 960, 3459, 3489
Bsc4I	CCNNNNNNNGG	9 cut(s)	152, 194, 902, 1461, 2480, 2660, 2712, 2738, 3140
Bse118I	RCCGGY	2 cut(s)	95, 1658
Bse3DI	GCAATG	3 cut(s)	3255, 3420, 3493
Bse8I	GATNNNNATC	2 cut(s)	1378, 2241
BseBI	CCWGG	4 cut(s)	1098, 1462, 1836, 2065
BseCI	ATCGAT	1 cut(s)	2457
BseDI	CCNNGG	4 cut(s)	1096, 1461, 2063, 2980
BseGI	GGATG	6 cut(s)	592, 2023, 2040, 2308, 3285, 3405
BseJI	GATNNNNATC	2 cut(s)	1378, 2241
BseLI	CCNNNNNNNGG	9 cut(s)	152, 194, 902, 1461, 2480, 2660, 2712, 2738, 3140
BseMI	GCAATG	3 cut(s)	3255, 3420, 3493
BseMII	CTCAG	7 cut(s)	218, 410, 806, 1828, 2053, 2306, 3435
BseRI	GAGGAG	3 cut(s)	28, 2178, 2903
BseSI	GKGCMC	1 cut(s)	1935
BseYI	CCCAGC	1 cut(s)	1418
BsgI	GTGCAG	1 cut(s)	2178
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	6 cut(s)	198, 342, 1101, 1876, 1933, 2716
BshNI	GGYRCC	3 cut(s)	60, 2537, 2640
BshVI	ATCGAT	1 cut(s)	2457
BsiHKAI	GWGCWC	2 cut(s)	888, 3358
BsiHKCI	CYCGRG	2 cut(s)	461, 3388
BsiSI	CCGG	6 cut(s)	27, 58, 96, 153, 1659, 2286
BslI	CCNNNNNNNGG	9 cut(s)	152, 194, 902, 1461, 2480, 2660, 2712, 2738, 3140
BsmAI	GTCTC	3 cut(s)	24, 3180, 3398
BsmBI	CGTCTC	1 cut(s)	3398
BsmI	GAATGC	1 cut(s)	2757
BsnI	GGCC	6 cut(s)	198, 342, 1101, 1876, 1933, 2716
BsoBI	CYCGRG	2 cut(s)	461, 3388
Bsp119I	TTCGAA	1 cut(s)	1591
Bsp120I	GGGCCC	1 cut(s)	1931
Bsp1286I	GDGCHC	5 cut(s)	462, 888, 1935, 2087, 3358
Bsp1407I	TGTACA	1 cut(s)	2997
Bsp19I	CCATGG	1 cut(s)	2980
BspACI	CCGC	8 cut(s)	24, 93, 496, 1334, 1670, 2206, 3159, 3334
BspANI	GGCC	6 cut(s)	198, 342, 1101, 1876, 1933, 2716
BspCNI	CTCAG	7 cut(s)	217, 409, 805, 1827, 2052, 2307, 3436
BspDI	ATCGAT	1 cut(s)	2457
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	2 cut(s)	388, 2011
BspLI	GGNNCC	7 cut(s)	62, 315, 1933, 2539, 2571, 2642, 3283
BspMI	ACCTGC	1 cut(s)	630
BspPI	GGATC	8 cut(s)	176, 179, 219, 386, 1047, 1680, 3276, 3289
BspT104I	TTCGAA	1 cut(s)	1591
BspT107I	GGYRCC	3 cut(s)	60, 2537, 2640
BspTI	CTTAAG	2 cut(s)	34, 379
BsrBI	CCGCTC	1 cut(s)	1334
BsrDI	GCAATG	3 cut(s)	3255, 3420, 3493
BsrFI	RCCGGY	2 cut(s)	95, 1658
BsrGI	TGTACA	1 cut(s)	2997
BssAI	RCCGGY	2 cut(s)	95, 1658
BssECI	CCNNGG	4 cut(s)	1096, 1461, 2063, 2980
BssNAI	GTATAC	3 cut(s)	2220, 2283, 3164
BssNI	GRCGYC	2 cut(s)	105, 3006
BssT1I	CCWWGG	1 cut(s)	2980
Bst1107I	GTATAC	3 cut(s)	2220, 2283, 3164
Bst2UI	CCWGG	4 cut(s)	1098, 1462, 1836, 2065
Bst4CI	ACNGT	6 cut(s)	517, 607, 1345, 2231, 3002, 3409
Bst6I	CTCTTC	2 cut(s)	5, 414
BstACI	GRCGYC	2 cut(s)	105, 3006
BstAFI	CTTAAG	2 cut(s)	34, 379
BstAPI	GCANNNNNTGC	1 cut(s)	2267
BstAUI	TGTACA	1 cut(s)	2997
BstBAI	YACGTR	1 cut(s)	3027
BstBI	TTCGAA	1 cut(s)	1591
BstC8I	GCNNGC	8 cut(s)	50, 224, 884, 1336, 2574, 3131, 3198, 3341
BstDEI	CTNAG	8 cut(s)	204, 396, 792, 1584, 1814, 2039, 2315, 3444
BstDSI	CCRYGG	1 cut(s)	2980
BstENI	CCTNNNNNAGG	2 cut(s)	192, 3138
BstF5I	GGATG	6 cut(s)	592, 2023, 2040, 2308, 3285, 3405
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	3 cut(s)	48, 522, 814
BstMAI	GTCTC	3 cut(s)	24, 3180, 3398
BstNI	CCWGG	4 cut(s)	1098, 1462, 1836, 2065
BstNSI	RCATGY	4 cut(s)	747, 2783, 3243, 3384
BstPAI	GACNNNNGTC	1 cut(s)	843
BstSCI	CCNGG	5 cut(s)	1096, 1460, 1834, 2063, 2285
BstSFI	CTRYAG	1 cut(s)	2328
BstSLI	GKGCMC	1 cut(s)	1935
BstUI	CGCG	1 cut(s)	48
BstV2I	GAAGAC	5 cut(s)	588, 839, 993, 2189, 2462
BstX2I	RGATCY	4 cut(s)	168, 1672, 2761, 3281
BstXI	CCANNNNNNTGG	1 cut(s)	2815
BstYI	RGATCY	4 cut(s)	168, 1672, 2761, 3281
BstZ17I	GTATAC	3 cut(s)	2220, 2283, 3164
Bsu15I	ATCGAT	1 cut(s)	2457
BsuI	GTATCC	2 cut(s)	648, 1796
BsuRI	GGCC	6 cut(s)	198, 342, 1101, 1876, 1933, 2716
BsuTUI	ATCGAT	1 cut(s)	2457
BtgI	CCRYGG	1 cut(s)	2980
BtsCI	GGATG	6 cut(s)	592, 2023, 2040, 2308, 3285, 3405
BtsI	GCAGTG	1 cut(s)	1637
BtsIMutI	CAGTG	6 cut(s)	1637, 1782, 2047, 2108, 2430, 3007
BveI	ACCTGC	1 cut(s)	630
Cac8I	GCNNGC	8 cut(s)	50, 224, 884, 1336, 2574, 3131, 3198, 3341
CciI	TCATGA	2 cut(s)	388, 2011
CfoI	GCGC	3 cut(s)	48, 522, 814
Cfr10I	RCCGGY	2 cut(s)	95, 1658
Cfr13I	GGNCC	5 cut(s)	1152, 1661, 1931, 1932, 3044
ClaI	ATCGAT	1 cut(s)	2457
CseI	GACGC	3 cut(s)	94, 1201, 2995
Csp6I	GTAC	7 cut(s)	513, 1549, 2098, 2253, 2427, 2985, 2998
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviQI	GTAC	7 cut(s)	513, 1549, 2098, 2253, 2427, 2985, 2998
DdeI	CTNAG	8 cut(s)	204, 396, 792, 1584, 1814, 2039, 2315, 3444
DraI	TTTAAA	1 cut(s)	696
EaeI	YGGCCR	3 cut(s)	340, 1099, 1874
Eam1104I	CTCTTC	2 cut(s)	5, 414
EarI	CTCTTC	2 cut(s)	5, 414
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	3356
Eco130I	CCWWGG	1 cut(s)	2980
Eco24I	GRGCYC	4 cut(s)	462, 1935, 2087, 3358
Eco47I	GGWCC	3 cut(s)	1152, 1661, 3044
Eco53kI	GAGCTC	1 cut(s)	3356
Eco57I	CTGAAG	5 cut(s)	582, 1032, 1758, 2201, 2600
Eco72I	CACGTG	1 cut(s)	3027
Eco88I	CYCGRG	2 cut(s)	461, 3388
EcoICRI	GAGCTC	1 cut(s)	3356
EcoNI	CCTNNNNNAGG	2 cut(s)	192, 3138
EcoO109I	RGGNCCY	1 cut(s)	1932
EcoRII	CCWGG	4 cut(s)	1096, 1460, 1834, 2063
EcoT14I	CCWWGG	1 cut(s)	2980
EcoT22I	ATGCAT	1 cut(s)	3382
EcoT38I	GRGCYC	4 cut(s)	462, 1935, 2087, 3358
ErhI	CCWWGG	1 cut(s)	2980
Esp3I	CGTCTC	1 cut(s)	3398
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FauI	CCCGC	2 cut(s)	1327, 3327
FauNDI	CATATG	2 cut(s)	1521, 3072
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	4 cut(s)	247, 2219, 2282, 3163
FokI	GGATG	6 cut(s)	599, 2010, 2047, 2315, 3272, 3412
FriOI	GRGCYC	4 cut(s)	462, 1935, 2087, 3358
FspBI	CTAG	8 cut(s)	194, 404, 869, 974, 1316, 1863, 2354, 2646
FspI	TGCGCA	1 cut(s)	521
GlaI	GCGC	3 cut(s)	47, 521, 813
GsaI	CCCAGC	1 cut(s)	1422
GsuI	CTGGAG	3 cut(s)	932, 2760, 3461
HaeIII	GGCC	6 cut(s)	198, 342, 1101, 1876, 1933, 2716
HapII	CCGG	6 cut(s)	27, 58, 96, 153, 1659, 2286
HgaI	GACGC	3 cut(s)	94, 1201, 2995
HhaI	GCGC	3 cut(s)	48, 522, 814
Hin1I	GRCGYC	2 cut(s)	105, 3006
Hin6I	GCGC	3 cut(s)	46, 520, 812
HinP1I	GCGC	3 cut(s)	46, 520, 812
HincII	GTYRAC	2 cut(s)	248, 2584
HindII	GTYRAC	2 cut(s)	248, 2584
HpaII	CCGG	6 cut(s)	27, 58, 96, 153, 1659, 2286
HphI	GGTGA	8 cut(s)	82, 815, 962, 2635, 2675, 2960, 3185, 3379
Hpy99I	CGWCG	1 cut(s)	1217
HpyCH4III	ACNGT	6 cut(s)	517, 607, 1345, 2231, 3002, 3409
HpyCH4IV	ACGT	4 cut(s)	2216, 3026, 3166, 3264
HpyF3I	CTNAG	8 cut(s)	204, 396, 792, 1584, 1814, 2039, 2315, 3444
HpySE526I	ACGT	4 cut(s)	2216, 3026, 3166, 3264
Hsp92I	GRCGYC	2 cut(s)	105, 3006
HspAI	GCGC	3 cut(s)	46, 520, 812
Ksp22I	TGATCA	1 cut(s)	589
LmnI	GCTCC	6 cut(s)	117, 319, 2569, 2708, 3361, 3497
LweI	GCATC	7 cut(s)	931, 1546, 1984, 2025, 2293, 2620, 2854
MaeI	CTAG	8 cut(s)	194, 404, 869, 974, 1316, 1863, 2354, 2646
MaeII	ACGT	4 cut(s)	2216, 3026, 3166, 3264
MaeIII	GTNAC	8 cut(s)	116, 601, 752, 2439, 2743, 3121, 3367, 3383
MbiI	CCGCTC	1 cut(s)	1334
MflI	RGATCY	4 cut(s)	168, 1672, 2761, 3281
MhlI	GDGCHC	5 cut(s)	462, 888, 1935, 2087, 3358
MlsI	TGGCCA	2 cut(s)	342, 1101
MluNI	TGGCCA	2 cut(s)	342, 1101
MlyI	GAGTC	8 cut(s)	80, 247, 431, 1519, 1833, 2179, 2828, 3182
MmeI	TCCRAC	5 cut(s)	916, 1603, 2051, 2270, 2547
Mox20I	TGGCCA	2 cut(s)	342, 1101
Mph1103I	ATGCAT	1 cut(s)	3382
MroXI	GAANNNNTTC	2 cut(s)	668, 2019
MscI	TGGCCA	2 cut(s)	342, 1101
MslI	CAYNNNNRTG	5 cut(s)	359, 1010, 1389, 1436, 2726
Msp20I	TGGCCA	2 cut(s)	342, 1101
MspA1I	CMGCKG	2 cut(s)	1769, 3443
MspCI	CTTAAG	2 cut(s)	34, 379
MspI	CCGG	6 cut(s)	27, 58, 96, 153, 1659, 2286
MspR9I	CCNGG	5 cut(s)	1098, 1462, 1836, 2065, 2287
Mva1269I	GAATGC	1 cut(s)	2757
MvaI	CCWGG	4 cut(s)	1098, 1462, 1836, 2065
MvnI	CGCG	1 cut(s)	48
NciI	CCSGG	1 cut(s)	2287
NcoI	CCATGG	1 cut(s)	2980
NdeI	CATATG	2 cut(s)	1521, 3072
NlaIV	GGNNCC	7 cut(s)	62, 315, 1933, 2539, 2571, 2642, 3283
NmuCI	GTSAC	4 cut(s)	116, 2439, 3121, 3367
NsbI	TGCGCA	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	3382
NspI	RCATGY	4 cut(s)	747, 2783, 3243, 3384
NspV	TTCGAA	1 cut(s)	1591
OliI	CACNNNNGTG	1 cut(s)	1436
PaeR7I	CTCGAG	2 cut(s)	461, 3388
PagI	TCATGA	2 cut(s)	388, 2011
PciI	ACATGT	1 cut(s)	3239
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	2757
PdmI	GAANNNNTTC	2 cut(s)	668, 2019
PfeI	GAWTC	9 cut(s)	1067, 1231, 1457, 1588, 1780, 1894, 2311, 2369, 2459
PflMI	CCANNNNNTGG	1 cut(s)	2738
PfoI	TCCNGGA	1 cut(s)	1834
PleI	GAGTC	8 cut(s)	79, 247, 430, 1519, 1833, 2179, 2827, 3182
PmaCI	CACGTG	1 cut(s)	3027
PmlI	CACGTG	1 cut(s)	3027
PpsI	GAGTC	8 cut(s)	79, 247, 430, 1519, 1833, 2179, 2827, 3182
Ppu21I	YACGTR	1 cut(s)	3027
PscI	ACATGT	1 cut(s)	3239
PshAI	GACNNNNGTC	1 cut(s)	843
PshBI	ATTAAT	1 cut(s)	1299
PsiI	TTATAA	1 cut(s)	824
Psp124BI	GAGCTC	1 cut(s)	3358
Psp6I	CCWGG	4 cut(s)	1096, 1460, 1834, 2063
PspCI	CACGTG	1 cut(s)	3027
PspFI	CCCAGC	1 cut(s)	1418
PspGI	CCWGG	4 cut(s)	1096, 1460, 1834, 2063
PspN4I	GGNNCC	7 cut(s)	62, 315, 1933, 2539, 2571, 2642, 3283
PspOMI	GGGCCC	1 cut(s)	1931
PspPI	GGNCC	5 cut(s)	1152, 1661, 1931, 1932, 3044
PspXI	VCTCGAGB	1 cut(s)	3388
PsuI	RGATCY	4 cut(s)	168, 1672, 2761, 3281
PvuII	CAGCTG	2 cut(s)	1769, 3443
RsaI	GTAC	7 cut(s)	514, 1550, 2099, 2254, 2428, 2986, 2999
RsaNI	GTAC	7 cut(s)	513, 1549, 2098, 2253, 2427, 2985, 2998
RseI	CAYNNNNRTG	5 cut(s)	359, 1010, 1389, 1436, 2726
SacI	GAGCTC	1 cut(s)	3358
SalI	GTCGAC	1 cut(s)	246
Sau96I	GGNCC	5 cut(s)	1152, 1661, 1931, 1932, 3044
SchI	GAGTC	8 cut(s)	80, 247, 431, 1519, 1833, 2179, 2828, 3182
ScrFI	CCNGG	5 cut(s)	1098, 1462, 1836, 2065, 2287
SduI	GDGCHC	5 cut(s)	462, 888, 1935, 2087, 3358
SfaNI	GCATC	7 cut(s)	931, 1546, 1984, 2025, 2293, 2620, 2854
SfcI	CTRYAG	1 cut(s)	2328
Sfr274I	CTCGAG	2 cut(s)	461, 3388
SfuI	TTCGAA	1 cut(s)	1591
SinI	GGWCC	3 cut(s)	1152, 1661, 3044
SlaI	CTCGAG	2 cut(s)	461, 3388
SmiMI	CAYNNNNRTG	5 cut(s)	359, 1010, 1389, 1436, 2726
SmlI	CTYRAG	6 cut(s)	34, 379, 461, 950, 1121, 3388
SmoI	CTYRAG	6 cut(s)	34, 379, 461, 950, 1121, 3388
SpeI	ACTAGT	1 cut(s)	2353
SsiI	CCGC	8 cut(s)	24, 93, 496, 1334, 1670, 2206, 3159, 3334
SspI	AATATT	3 cut(s)	1570, 1888, 1918
SspMI	CTAG	8 cut(s)	194, 404, 869, 974, 1316, 1863, 2354, 2646
SstI	GAGCTC	1 cut(s)	3358
StyD4I	CCNGG	5 cut(s)	1096, 1460, 1834, 2063, 2285
StyI	CCWWGG	1 cut(s)	2980
TaaI	ACNGT	6 cut(s)	517, 607, 1345, 2231, 3002, 3409
TaiI	ACGT	4 cut(s)	2219, 3029, 3169, 3267
TatI	WGTACW	1 cut(s)	2997
TfiI	GAWTC	9 cut(s)	1067, 1231, 1457, 1588, 1780, 1894, 2311, 2369, 2459
TscAI	CASTG	6 cut(s)	1644, 1782, 2047, 2108, 2437, 3007
TseFI	GTSAC	4 cut(s)	116, 2439, 3121, 3367
Tsp45I	GTSAC	4 cut(s)	116, 2439, 3121, 3367
TspGWI	ACGGA	3 cut(s)	104, 645, 2381
TspRI	CASTG	6 cut(s)	1644, 1782, 2047, 2108, 2437, 3007
Van91I	CCANNNNNTGG	1 cut(s)	2738
Vha464I	CTTAAG	2 cut(s)	34, 379
VpaK11BI	GGWCC	3 cut(s)	1152, 1661, 3044
VspI	ATTAAT	1 cut(s)	1299
XagI	CCTNNNNNAGG	2 cut(s)	192, 3138
XapI	RAATTY	8 cut(s)	258, 334, 726, 761, 992, 2019, 2669, 3086
XbaI	TCTAGA	3 cut(s)	868, 1315, 1862
XceI	RCATGY	4 cut(s)	747, 2783, 3243, 3384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	796
XhoI	CTCGAG	2 cut(s)	461, 3388
XmiI	GTMKAC	4 cut(s)	247, 2219, 2282, 3163
XmnI	GAANNNNTTC	2 cut(s)	668, 2019
XspI	CTAG	8 cut(s)	194, 404, 869, 974, 1316, 1863, 2354, 2646
Zsp2I	ATGCAT	1 cut(s)	3382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.