Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015580.1

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Forward (+)

26356 .. 43988

Gene Structure 17633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015580.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3615 bp

atgcctggtagaagcacggtgaaaacccatccgggcctggtgccttggatggagataagtgttggtcttgtttctagttttaggctcaccaaatacgggattggagtggtgggggacaagtgctgctggtttcttgtcggcgatggtggttgggttcgacagcaacagtggcgcttcagtgatggaaaggtgatggcggtgctacccgtgcagatgatccgaacggagaagagaaacaaggccacgatgcagcagaagaggagaacctccgccggagacttaagccacttgcgggagctgttccggcaccacatagagtccttcgattacctcatcaccgccggtctcggcgtcatgctccgccgacctcagaaggatcggagtagcgagcctctctatccttttgaatgtcgacagactcgaatttcctacacgggtaaattgctggcagacatttactttcagcgtgatgataaggctcctgtcagagagcagttaaattttggccagtttcccatcatgctcatgtcaaagtgttgcaacttaagaggtcatgatcctcagcagctagtttcttgcaaagaagagtcatcagaaatgggtggctacttcattttgaatgggctcgagagagttattcgacctgttatattgccgaagcggaactatccaatgagtacggtgcgcaattcatttcgtgatcgaaaggaaggatatacagataaagcagttgtgataagatgtgtaagagatgatcagtcatcagtaacagtcaaattgtattacctgcaaaacggaagtgcaagacttggtgtttggatacaggggaaggagttcttgcttcctgtgggtcttattttaaaggcttttattgacactcctgatcgtgaaatttttgcgagtttgacatgctgttgtaacgagaaatttgagaaagacaaaggtgctgttgccactcagcttgtgggtgagagggcgcaaattattataaatgaagtggcagacttgggtcttcacactcatcttcaatgtctagaacacattggcgagcactttcaacctctaatgggtggactggagaatgaaccttattcagttgttggagatgcggttctcaaggactacatatttaaacttttttcgcttatggatcagacttcggttctcgacaacccagattccttgcaaaatcaagaagtcttactccctggccatctgataaccatatatctcaaggaaaaattagaggattggttgcaaaggaccaaaaaacttcttcaagatgagatgaaaaaggaaagcaacaatatcaattttggcagcgtcgatagcttaaaaaaggttctggaaaaaaatcctacgaggcaaatcagtatggcgattgagaatttgttgaaaactggaagaattaatactcaaacaggtctagatttgcagcagagggcgggatttacagttcaggcagaaaggcttaactttttacgatttttatcgcattttcgtgctgttcatcgaggggcttcatttgctgggcttcgcaccacaagtgtgcgaaaattgcttcccgaatcctggggtttcctttgccctgtgcatacacctgatggagagccatgtggcttgttgaaccatatgactcgcacttgtagaattacatcgtactttgatgcacaagggaatattagagatttctctaagattcgaatgtctattcttaatgttctgatcgaagttggaatgacaccttcactgccaatgttggttcatgccggtcctcctgcggatctttctgttcttttagatggtcgtcttgttggttatatatcttccaaacaagttgagagagttgtggctcatttaaggaagctgaaagtttcagctgcttcagtgattccagatgacttggaagtgggatacattcctctcagcatgggtggggcatatcctggtctctaccttaacacttctccttctagatttgttcggccagttaagaatatttcgattcctgctgttgaaggtcaaaatattgaactcattgggccctttgaacaggtgttcatggaaataagatgtcctgatggtcgagatggtggaaggaaagatgctttccctgcaactcatgaagaaattcatccaactgggatgctcagtgttgttgctaatcttactccctggtcagaacataatcagagcccacgaaatatgtaccagtgtcagatggcaaaacaaacgatgggtttctcattacaagcactttgcaatcgtgcagatcagaagttgtatcatctgaagactcctcaatctcccatcgtccgcacaaaaacgtatacgaattactgtgtagatgaatatccaacgggcacaaatgcaatcgttgctgtattgtcgtataccgggtacgatatggaggatgctatgattctgagcaagtcatctgtagatcgtggaatgtttcatggactagtatatcagacggaatccattgacttgtctgatacaaagggtagtaaatcccagagatcgttcaggagaagtaccactgataagtcacatcattctttgatcgattcagatggtcttccttatgtgggtcagacaataaaaccagatgaaccctattatagcacttatgatgagataaaaggtgccataagaacgaccaaacgaaaggggtcagagcctgctattgttgactatgttgctattgatgggaagaagcatcttcagaaggtgaacataaggtttcggcaccctagaaacccgataattggtgataaatttagcagccgacatggacaaaaaggagtttgctcccagttgtggcctgacattgatatgccattttctggagttacgggaatgcgaccagatcttattatcaatccacatgcatttccttcaagaatgacaatagccatgcttttggagtcggttgccgcaaaggggggtagcttacatggaaaatatgttgatgcgacaccatttgctaattcagaggagaaagttaatgaagaaactaatggagagaaatccaaaacccttgttgatgaacttggtgaaatgttaaaggttaaagggtttaattaccatggtgcagaggtattgtacagtggcgtctatggaacagaactcacgtgtgaaatctttattggtcctgtttactatcaacgattacggcatatggtttcagacaaatttcaggttcgctctacgggaatggtagatcaagtcacacgccagcctatcaaaggacgaaaacgaggtggcggtatacgttttggtgaaatggagagagactccttgcttgcacatggggcagcatatttgttgcatgatagacttcatacatgttctgattatcacattgctgacgtatgttccctttgtggatccatcctaacaacctcatcagtccagccacaaatacgggttcgtgaaatgcggggcttgccccctatgagagctcccaagaaggtgacttgccatgcatgtaagtcgagtaaagggatggagacggttgcaatgccttatgtctttagatatttagcagctgagttagcagctatgaacataaaactgaccctccagttgagcaatgcaactggagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1204

Amino Acids

135.24

Weight (kDa)

9.03

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
Acc16I	TGCGCA	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	795
AccB1I	GGYRCC	4 cut(s)	40, 306, 2648, 2751
AccB7I	CCANNNNNTGG	1 cut(s)	2849
AccI	GTMKAC	4 cut(s)	412, 2330, 2393, 3274
AclWI	GGATC	7 cut(s)	211, 384, 551, 1158, 1791, 3387, 3400
AcoI	YGGCCR	3 cut(s)	505, 1210, 1985
AcsI	RAATTY	8 cut(s)	423, 499, 891, 926, 1387, 2130, 2780, 3197
AcuI	CTGAAG	4 cut(s)	160, 1869, 2312, 2711
AcvI	CACGTG	1 cut(s)	3138
AcyI	GRCGYC	2 cut(s)	351, 3117
AfaI	GTAC	6 cut(s)	679, 1661, 2210, 2402, 2539, 3110
AflII	CTTAAG	2 cut(s)	280, 544
AflIII	ACRYGT	2 cut(s)	3137, 3350
AhlI	ACTAGT	1 cut(s)	2464
AjnI	CCWGG	6 cut(s)	4, 36, 1207, 1571, 1945, 2174
AjuI	GAANNNNNNNTTGG	2 cut(s)	3135, 3167
AleI	CACNNNNGTG	1 cut(s)	1547
AloI	GAACNNNNNNTCC	4 cut(s)	1095, 1127, 1440, 1472
Alw21I	GWGCWC	2 cut(s)	1053, 3469
Alw26I	GTCTC	5 cut(s)	270, 350, 1955, 3291, 3509
AlwI	GGATC	7 cut(s)	211, 384, 551, 1158, 1791, 3387, 3400
AlwNI	CAGNNNCTG	1 cut(s)	2684
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	7 cut(s)	34, 240, 505, 1210, 1985, 2042, 2825
ApaI	GGGCCC	1 cut(s)	2046
ApoI	RAATTY	8 cut(s)	423, 499, 891, 926, 1387, 2130, 2780, 3197
ArsI	GACNNNNNNTTYG	2 cut(s)	798, 830
AseI	ATTAAT	1 cut(s)	1410
Asp700I	GAANNNNTTC	2 cut(s)	833, 2130
AspLEI	GCGC	3 cut(s)	174, 687, 979
AspS9I	GGNCC	6 cut(s)	34, 1263, 1772, 2042, 2043, 3155
AsuC2I	CCSGG	2 cut(s)	33, 2398
AsuII	TTCGAA	1 cut(s)	1702
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	3 cut(s)	1263, 1772, 3155
BaeGI	GKGCMC	2 cut(s)	2046, 2366
BalI	TGGCCA	2 cut(s)	507, 1212
BamHI	GGATCC	1 cut(s)	3392
BanI	GGYRCC	4 cut(s)	40, 306, 2648, 2751
BanII	GRGCYC	4 cut(s)	627, 2046, 2198, 3469
BarI	GAAGNNNNNNTAC	2 cut(s)	1396, 1428
BbrPI	CACGTG	1 cut(s)	3138
BbsI	GAAGAC	3 cut(s)	1004, 2300, 2573
Bbv12I	GWGCWC	2 cut(s)	1053, 3469
BbvCI	CCTCAGC	1 cut(s)	561
BceAI	ACGGC	1 cut(s)	3194
BcgI	CGANNNNNNTGC	2 cut(s)	3480, 3514
BciT130I	CCWGG	6 cut(s)	6, 38, 1209, 1573, 1947, 2176
BciVI	GTATCC	2 cut(s)	813, 1907
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	2 cut(s)	33, 2398
BcoDI	GTCTC	5 cut(s)	270, 350, 1955, 3291, 3509
BcuI	ACTAGT	1 cut(s)	2464
BfaI	CTAG	7 cut(s)	75, 569, 1034, 1427, 1974, 2465, 2757
BfmI	CTRYAG	1 cut(s)	2439
BfoI	RGCGCY	1 cut(s)	175
BfrI	CTTAAG	2 cut(s)	280, 544
BfuAI	ACCTGC	1 cut(s)	795
BfuI	GTATCC	2 cut(s)	813, 1907
BglII	AGATCT	1 cut(s)	2872
Bme1390I	CCNGG	8 cut(s)	6, 33, 38, 1209, 1573, 1947, 2176, 2398
Bme18I	GGWCC	3 cut(s)	1263, 1772, 3155
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	6 cut(s)	34, 1263, 1772, 2042, 2043, 3155
BmiI	GGNNCC	7 cut(s)	42, 308, 480, 2044, 2650, 2753, 3394
BmrFI	CCNGG	8 cut(s)	6, 33, 38, 1209, 1573, 1947, 2176, 2398
BmrI	ACTGGG	2 cut(s)	2151, 2812
BmsI	GCATC	8 cut(s)	237, 1096, 1657, 2095, 2136, 2404, 2731, 2965
BmuI	ACTGGG	2 cut(s)	2151, 2812
BoxI	GACNNNNGTC	1 cut(s)	1008
BpiI	GAAGAC	3 cut(s)	1004, 2300, 2573
BplI	GAGNNNNNCTC	2 cut(s)	3284, 3316
BpmI	CTGGAG	3 cut(s)	1097, 2871, 3572
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	1702
BpuEI	CTTGAG	2 cut(s)	1100, 1217
BpuMI	CCSGG	2 cut(s)	33, 2398
Bsa29I	ATCGAT	1 cut(s)	2568
BsaAI	YACGTR	1 cut(s)	3138
BsaBI	GATNNNNATC	2 cut(s)	1489, 2352
BsaHI	GRCGYC	2 cut(s)	351, 3117
BsaI	GGTCTC	2 cut(s)	350, 1955
BsaJI	CCNNGG	5 cut(s)	44, 1207, 1572, 2174, 3091
BsaXI	ACNNNNNCTCC	4 cut(s)	1095, 1125, 3570, 3600
Bse118I	RCCGGY	2 cut(s)	341, 1769
Bse1I	ACTGG	9 cut(s)	508, 1080, 1405, 1988, 2146, 2212, 2818, 3589, 3610
Bse3DI	GCAATG	3 cut(s)	3366, 3531, 3604
Bse8I	GATNNNNATC	2 cut(s)	1489, 2352
BseBI	CCWGG	6 cut(s)	6, 38, 1209, 1573, 1947, 2176
BseCI	ATCGAT	1 cut(s)	2568
BseDI	CCNNGG	5 cut(s)	44, 1207, 1572, 2174, 3091
BseGI	GGATG	7 cut(s)	28, 54, 2134, 2151, 2419, 3396, 3516
BseJI	GATNNNNATC	2 cut(s)	1489, 2352
BseMI	GCAATG	3 cut(s)	3366, 3531, 3604
BseMII	CTCAG	7 cut(s)	383, 575, 971, 1939, 2164, 2417, 3546
BseNI	ACTGG	9 cut(s)	508, 1080, 1405, 1988, 2146, 2212, 2818, 3589, 3610
BseRI	GAGGAG	3 cut(s)	274, 2289, 3014
BseSI	GKGCMC	2 cut(s)	2046, 2366
BseYI	CCCAGC	1 cut(s)	1529
BsgI	GTGCAG	3 cut(s)	230, 2289, 3117
BshFI	GGCC	7 cut(s)	36, 242, 507, 1212, 1987, 2044, 2827
BshNI	GGYRCC	4 cut(s)	40, 306, 2648, 2751
BshVI	ATCGAT	1 cut(s)	2568
BsiHKAI	GWGCWC	2 cut(s)	1053, 3469
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	6 cut(s)	32, 273, 304, 342, 1770, 2397
BslFI	GGGAC	1 cut(s)	128
BsmAI	GTCTC	5 cut(s)	270, 350, 1955, 3291, 3509
BsmBI	CGTCTC	1 cut(s)	3509
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	2868
BsnI	GGCC	7 cut(s)	36, 242, 507, 1212, 1987, 2044, 2827
Bso31I	GGTCTC	2 cut(s)	350, 1955
BsoBI	CYCGRG	1 cut(s)	626
Bsp119I	TTCGAA	1 cut(s)	1702
Bsp120I	GGGCCC	1 cut(s)	2042
Bsp1286I	GDGCHC	6 cut(s)	627, 1053, 2046, 2198, 2366, 3469
Bsp1407I	TGTACA	1 cut(s)	3108
Bsp19I	CCATGG	1 cut(s)	3091
BspANI	GGCC	7 cut(s)	36, 242, 507, 1212, 1987, 2044, 2827
BspCNI	CTCAG	7 cut(s)	382, 574, 970, 1938, 2163, 2418, 3547
BspDI	ATCGAT	1 cut(s)	2568
BspHI	TCATGA	2 cut(s)	553, 2122
BspLI	GGNNCC	7 cut(s)	42, 308, 480, 2044, 2650, 2753, 3394
BspMI	ACCTGC	1 cut(s)	795
BspPI	GGATC	7 cut(s)	211, 384, 551, 1158, 1791, 3387, 3400
BspT104I	TTCGAA	1 cut(s)	1702
BspT107I	GGYRCC	4 cut(s)	40, 306, 2648, 2751
BspTI	CTTAAG	2 cut(s)	280, 544
BspTNI	GGTCTC	2 cut(s)	350, 1955
BsrDI	GCAATG	3 cut(s)	3366, 3531, 3604
BsrFI	RCCGGY	2 cut(s)	341, 1769
BsrGI	TGTACA	1 cut(s)	3108
BsrI	ACTGG	9 cut(s)	508, 1080, 1405, 1988, 2146, 2212, 2818, 3589, 3610
BssAI	RCCGGY	2 cut(s)	341, 1769
BssECI	CCNNGG	5 cut(s)	44, 1207, 1572, 2174, 3091
BssNAI	GTATAC	3 cut(s)	2331, 2394, 3275
BssNI	GRCGYC	2 cut(s)	351, 3117
BssT1I	CCWWGG	2 cut(s)	44, 3091
Bst1107I	GTATAC	3 cut(s)	2331, 2394, 3275
Bst2UI	CCWGG	6 cut(s)	6, 38, 1209, 1573, 1947, 2176
Bst4CI	ACNGT	8 cut(s)	19, 168, 682, 772, 1456, 2342, 3113, 3520
Bst6I	CTCTTC	3 cut(s)	224, 251, 579
BstACI	GRCGYC	2 cut(s)	351, 3117
BstAFI	CTTAAG	2 cut(s)	280, 544
BstAPI	GCANNNNNTGC	1 cut(s)	2378
BstAUI	TGTACA	1 cut(s)	3108
BstBAI	YACGTR	1 cut(s)	3138
BstBI	TTCGAA	1 cut(s)	1702
BstC8I	GCNNGC	7 cut(s)	389, 447, 1049, 2685, 3242, 3309, 3452
BstDEI	CTNAG	8 cut(s)	369, 561, 957, 1695, 1925, 2150, 2426, 3555
BstDSI	CCRYGG	1 cut(s)	3091
BstENI	CCTNNNNNAGG	1 cut(s)	3249
BstF5I	GGATG	7 cut(s)	28, 54, 2134, 2151, 2419, 3396, 3516
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	3 cut(s)	174, 687, 979
BstMAI	GTCTC	5 cut(s)	270, 350, 1955, 3291, 3509
BstNI	CCWGG	6 cut(s)	6, 38, 1209, 1573, 1947, 2176
BstNSI	RCATGY	4 cut(s)	912, 2894, 3354, 3495
BstPAI	GACNNNNGTC	1 cut(s)	1008
BstSCI	CCNGG	8 cut(s)	4, 31, 36, 1207, 1571, 1945, 2174, 2396
BstSFI	CTRYAG	1 cut(s)	2439
BstSLI	GKGCMC	2 cut(s)	2046, 2366
BstV2I	GAAGAC	3 cut(s)	1004, 2300, 2573
BstX2I	RGATCY	3 cut(s)	1783, 2872, 3392
BstXI	CCANNNNNNTGG	1 cut(s)	2926
BstYI	RGATCY	3 cut(s)	1783, 2872, 3392
BstZ17I	GTATAC	3 cut(s)	2331, 2394, 3275
Bsu15I	ATCGAT	1 cut(s)	2568
BsuI	GTATCC	2 cut(s)	813, 1907
BsuRI	GGCC	7 cut(s)	36, 242, 507, 1212, 1987, 2044, 2827
BsuTUI	ATCGAT	1 cut(s)	2568
BtgI	CCRYGG	1 cut(s)	3091
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	7 cut(s)	28, 54, 2134, 2151, 2419, 3396, 3516
BtsI	GCAGTG	1 cut(s)	1748
BtsIMutI	CAGTG	8 cut(s)	173, 184, 1748, 1893, 2158, 2219, 2541, 3118
BveI	ACCTGC	1 cut(s)	795
Cac8I	GCNNGC	7 cut(s)	389, 447, 1049, 2685, 3242, 3309, 3452
CaiI	CAGNNNCTG	1 cut(s)	2684
CciI	TCATGA	2 cut(s)	553, 2122
CfoI	GCGC	3 cut(s)	174, 687, 979
Cfr10I	RCCGGY	2 cut(s)	341, 1769
Cfr13I	GGNCC	6 cut(s)	34, 1263, 1772, 2042, 2043, 3155
ClaI	ATCGAT	1 cut(s)	2568
CseI	GACGC	3 cut(s)	340, 1312, 3106
Csp6I	GTAC	6 cut(s)	678, 1660, 2209, 2401, 2538, 3109
CspCI	CAANNNNNGTGG	2 cut(s)	943, 978
CviQI	GTAC	6 cut(s)	678, 1660, 2209, 2401, 2538, 3109
DdeI	CTNAG	8 cut(s)	369, 561, 957, 1695, 1925, 2150, 2426, 3555
DraI	TTTAAA	2 cut(s)	861, 1132
EaeI	YGGCCR	3 cut(s)	505, 1210, 1985
Eam1104I	CTCTTC	3 cut(s)	224, 251, 579
EarI	CTCTTC	3 cut(s)	224, 251, 579
EciI	GGCGGA	2 cut(s)	259, 350
Ecl136II	GAGCTC	1 cut(s)	3467
Eco130I	CCWWGG	2 cut(s)	44, 3091
Eco24I	GRGCYC	4 cut(s)	627, 2046, 2198, 3469
Eco31I	GGTCTC	2 cut(s)	350, 1955
Eco47I	GGWCC	3 cut(s)	1263, 1772, 3155
Eco53kI	GAGCTC	1 cut(s)	3467
Eco57I	CTGAAG	4 cut(s)	160, 1869, 2312, 2711
Eco72I	CACGTG	1 cut(s)	3138
Eco88I	CYCGRG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	3467
EcoNI	CCTNNNNNAGG	1 cut(s)	3249
EcoO109I	RGGNCCY	1 cut(s)	2043
EcoRII	CCWGG	6 cut(s)	4, 36, 1207, 1571, 1945, 2174
EcoT14I	CCWWGG	2 cut(s)	44, 3091
EcoT22I	ATGCAT	2 cut(s)	2896, 3493
EcoT38I	GRGCYC	4 cut(s)	627, 2046, 2198, 3469
ErhI	CCWWGG	2 cut(s)	44, 3091
Esp3I	CGTCTC	1 cut(s)	3509
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	128
FauI	CCCGC	3 cut(s)	285, 1438, 3438
FauNDI	CATATG	2 cut(s)	1632, 3183
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	4 cut(s)	412, 2330, 2393, 3274
FokI	GGATG	7 cut(s)	15, 61, 2121, 2158, 2426, 3383, 3523
FriOI	GRGCYC	4 cut(s)	627, 2046, 2198, 3469
FspBI	CTAG	7 cut(s)	75, 569, 1034, 1427, 1974, 2465, 2757
FspI	TGCGCA	1 cut(s)	686
GlaI	GCGC	3 cut(s)	173, 686, 978
GsaI	CCCAGC	1 cut(s)	1533
GsuI	CTGGAG	3 cut(s)	1097, 2871, 3572
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	7 cut(s)	36, 242, 507, 1212, 1987, 2044, 2827
HapII	CCGG	6 cut(s)	32, 273, 304, 342, 1770, 2397
HgaI	GACGC	3 cut(s)	340, 1312, 3106
HhaI	GCGC	3 cut(s)	174, 687, 979
Hin1I	GRCGYC	2 cut(s)	351, 3117
Hin6I	GCGC	3 cut(s)	172, 685, 977
HinP1I	GCGC	3 cut(s)	172, 685, 977
HincII	GTYRAC	2 cut(s)	413, 2695
HindII	GTYRAC	2 cut(s)	413, 2695
HpaII	CCGG	6 cut(s)	32, 273, 304, 342, 1770, 2397
Hpy166II	GTNNAC	8 cut(s)	413, 1073, 2331, 2394, 2695, 2737, 3163, 3275
Hpy8I	GTNNAC	8 cut(s)	413, 1073, 2331, 2394, 2695, 2737, 3163, 3275
Hpy99I	CGWCG	1 cut(s)	1328
HpyCH4III	ACNGT	8 cut(s)	19, 168, 682, 772, 1456, 2342, 3113, 3520
HpyCH4IV	ACGT	4 cut(s)	2327, 3137, 3277, 3375
HpyF3I	CTNAG	8 cut(s)	369, 561, 957, 1695, 1925, 2150, 2426, 3555
HpySE526I	ACGT	4 cut(s)	2327, 3137, 3277, 3375
Hsp92I	GRCGYC	2 cut(s)	351, 3117
HspAI	GCGC	3 cut(s)	172, 685, 977
Ksp22I	TGATCA	1 cut(s)	754
LmnI	GCTCC	6 cut(s)	295, 363, 484, 2819, 3472, 3608
LweI	GCATC	8 cut(s)	237, 1096, 1657, 2095, 2136, 2404, 2731, 2965
MaeI	CTAG	7 cut(s)	75, 569, 1034, 1427, 1974, 2465, 2757
MaeII	ACGT	4 cut(s)	2327, 3137, 3277, 3375
MaeIII	GTNAC	6 cut(s)	766, 917, 2550, 2854, 3232, 3478
MflI	RGATCY	3 cut(s)	1783, 2872, 3392
MhlI	GDGCHC	6 cut(s)	627, 1053, 2046, 2198, 2366, 3469
MlsI	TGGCCA	2 cut(s)	507, 1212
MluNI	TGGCCA	2 cut(s)	507, 1212
MlyI	GAGTC	7 cut(s)	326, 412, 596, 1630, 2290, 2939, 3293
MmeI	TCCRAC	4 cut(s)	1081, 1714, 2162, 2381
Mox20I	TGGCCA	2 cut(s)	507, 1212
Mph1103I	ATGCAT	2 cut(s)	2896, 3493
MroXI	GAANNNNTTC	2 cut(s)	833, 2130
MscI	TGGCCA	2 cut(s)	507, 1212
MslI	CAYNNNNRTG	4 cut(s)	524, 1500, 1547, 2837
Msp20I	TGGCCA	2 cut(s)	507, 1212
MspA1I	CMGCKG	2 cut(s)	1880, 3554
MspCI	CTTAAG	2 cut(s)	280, 544
MspI	CCGG	6 cut(s)	32, 273, 304, 342, 1770, 2397
MspR9I	CCNGG	8 cut(s)	6, 33, 38, 1209, 1573, 1947, 2176, 2398
Mva1269I	GAATGC	1 cut(s)	2868
MvaI	CCWGG	6 cut(s)	6, 38, 1209, 1573, 1947, 2176
NciI	CCSGG	2 cut(s)	33, 2398
NcoI	CCATGG	1 cut(s)	3091
NdeI	CATATG	2 cut(s)	1632, 3183
NlaIV	GGNNCC	7 cut(s)	42, 308, 480, 2044, 2650, 2753, 3394
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	3 cut(s)	2550, 3232, 3478
NsbI	TGCGCA	1 cut(s)	686
NsiI	ATGCAT	2 cut(s)	2896, 3493
NspI	RCATGY	4 cut(s)	912, 2894, 3354, 3495
NspV	TTCGAA	1 cut(s)	1702
OliI	CACNNNNGTG	1 cut(s)	1547
PaeR7I	CTCGAG	1 cut(s)	626
PagI	TCATGA	2 cut(s)	553, 2122
PciI	ACATGT	1 cut(s)	3350
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PctI	GAATGC	1 cut(s)	2868
PdmI	GAANNNNTTC	2 cut(s)	833, 2130
PfeI	GAWTC	8 cut(s)	1178, 1568, 1699, 1891, 2005, 2422, 2480, 2570
PflMI	CCANNNNNTGG	1 cut(s)	2849
PleI	GAGTC	7 cut(s)	325, 412, 595, 1630, 2290, 2938, 3293
PmaCI	CACGTG	1 cut(s)	3138
PmlI	CACGTG	1 cut(s)	3138
PpsI	GAGTC	7 cut(s)	325, 412, 595, 1630, 2290, 2938, 3293
Ppu21I	YACGTR	1 cut(s)	3138
PscI	ACATGT	1 cut(s)	3350
PshAI	GACNNNNGTC	1 cut(s)	1008
PshBI	ATTAAT	1 cut(s)	1410
PsiI	TTATAA	1 cut(s)	989
Psp124BI	GAGCTC	1 cut(s)	3469
Psp6I	CCWGG	6 cut(s)	4, 36, 1207, 1571, 1945, 2174
PspCI	CACGTG	1 cut(s)	3138
PspFI	CCCAGC	1 cut(s)	1529
PspGI	CCWGG	6 cut(s)	4, 36, 1207, 1571, 1945, 2174
PspN4I	GGNNCC	7 cut(s)	42, 308, 480, 2044, 2650, 2753, 3394
PspOMI	GGGCCC	1 cut(s)	2042
PspPI	GGNCC	6 cut(s)	34, 1263, 1772, 2042, 2043, 3155
PstNI	CAGNNNCTG	1 cut(s)	2684
PsuI	RGATCY	3 cut(s)	1783, 2872, 3392
PvuII	CAGCTG	2 cut(s)	1880, 3554
RsaI	GTAC	6 cut(s)	679, 1661, 2210, 2402, 2539, 3110
RsaNI	GTAC	6 cut(s)	678, 1660, 2209, 2401, 2538, 3109
RseI	CAYNNNNRTG	4 cut(s)	524, 1500, 1547, 2837
SacI	GAGCTC	1 cut(s)	3469
SalI	GTCGAC	1 cut(s)	411
Sau96I	GGNCC	6 cut(s)	34, 1263, 1772, 2042, 2043, 3155
SchI	GAGTC	7 cut(s)	326, 412, 596, 1630, 2290, 2939, 3293
ScrFI	CCNGG	8 cut(s)	6, 33, 38, 1209, 1573, 1947, 2176, 2398
SduI	GDGCHC	6 cut(s)	627, 1053, 2046, 2198, 2366, 3469
SfaNI	GCATC	8 cut(s)	237, 1096, 1657, 2095, 2136, 2404, 2731, 2965
SfcI	CTRYAG	1 cut(s)	2439
Sfr274I	CTCGAG	1 cut(s)	626
SfuI	TTCGAA	1 cut(s)	1702
SinI	GGWCC	3 cut(s)	1263, 1772, 3155
SlaI	CTCGAG	1 cut(s)	626
SmiMI	CAYNNNNRTG	4 cut(s)	524, 1500, 1547, 2837
SmlI	CTYRAG	5 cut(s)	280, 544, 626, 1115, 1232
SmoI	CTYRAG	5 cut(s)	280, 544, 626, 1115, 1232
SpeI	ACTAGT	1 cut(s)	2464
SspI	AATATT	3 cut(s)	1681, 1999, 2029
SspMI	CTAG	7 cut(s)	75, 569, 1034, 1427, 1974, 2465, 2757
SstI	GAGCTC	1 cut(s)	3469
StyD4I	CCNGG	8 cut(s)	4, 31, 36, 1207, 1571, 1945, 2174, 2396
StyI	CCWWGG	2 cut(s)	44, 3091
TaaI	ACNGT	8 cut(s)	19, 168, 682, 772, 1456, 2342, 3113, 3520
TaiI	ACGT	4 cut(s)	2330, 3140, 3280, 3378
TatI	WGTACW	1 cut(s)	3108
TauI	GCSGC	1 cut(s)	2942
TfiI	GAWTC	8 cut(s)	1178, 1568, 1699, 1891, 2005, 2422, 2480, 2570
TscAI	CASTG	8 cut(s)	173, 184, 1755, 1893, 2158, 2219, 2548, 3118
TseFI	GTSAC	3 cut(s)	2550, 3232, 3478
Tsp45I	GTSAC	3 cut(s)	2550, 3232, 3478
TspGWI	ACGGA	3 cut(s)	239, 810, 2492
TspRI	CASTG	8 cut(s)	173, 184, 1755, 1893, 2158, 2219, 2548, 3118
Van91I	CCANNNNNTGG	1 cut(s)	2849
Vha464I	CTTAAG	2 cut(s)	280, 544
VpaK11BI	GGWCC	3 cut(s)	1263, 1772, 3155
VspI	ATTAAT	1 cut(s)	1410
XagI	CCTNNNNNAGG	1 cut(s)	3249
XapI	RAATTY	8 cut(s)	423, 499, 891, 926, 1387, 2130, 2780, 3197
XbaI	TCTAGA	3 cut(s)	1033, 1426, 1973
XceI	RCATGY	4 cut(s)	912, 2894, 3354, 3495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XhoI	CTCGAG	1 cut(s)	626
XmiI	GTMKAC	4 cut(s)	412, 2330, 2393, 3274
XmnI	GAANNNNTTC	2 cut(s)	833, 2130
XspI	CTAG	7 cut(s)	75, 569, 1034, 1427, 1974, 2465, 2757
Zsp2I	ATGCAT	2 cut(s)	2896, 3493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.