DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29940 |
| fragaria_vesca | FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 |
| malus_domestica | MD08G1237100.v1.1 MD15G1428900.v1.1 |
| prunus_persica | Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1 |
| pyrus_communis | pycom08g20550 |
| rosa_chinensis | RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591 |
| rosa_laevigata | RLG00000029239 |
| rosa_multiflora | Rmu_sc0015580.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00313560 Rroxscaffold_4G00313600 |
| rosa_rugosa | Rorug01G0140100.1 |
| rosa_samantha | Rh1AG158100 Rh1CG147600 |
| rosa_wichuraiana | Rw1G013100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 771 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 2251, 2599 |
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc36I | ACCTGC | 1 cut(s) | 2448 |
| AccB1I | GGYRCC | 1 cut(s) | 93 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2798 |
| AccBSI | CCGCTC | 1 cut(s) | 871 |
| AccI | GTMKAC | 3 cut(s) | 174, 286, 3217 |
| AccII | CGCG | 2 cut(s) | 71, 1882 |
| AciI | CCGC | 8 cut(s) | 71, 74, 354, 535, 871, 1501, 3057, 3386 |
| AclWI | GGATC | 3 cut(s) | 1107, 2400, 2601 |
| AcoI | YGGCCR | 1 cut(s) | 1934 |
| AcuI | CTGAAG | 6 cut(s) | 73, 621, 1680, 1818, 2660, 3518 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 309, 2540, 2720, 2772, 2798, 3194 |
| AflII | CTTAAG | 2 cut(s) | 418, 2240 |
| AflIII | ACRYGT | 3 cut(s) | 782, 3080, 3293 |
| AjiI | CACGTC | 1 cut(s) | 3383 |
| AjnI | CCWGG | 3 cut(s) | 1156, 1894, 2123 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3360, 3392 |
| AleI | CACNNNNGTG | 1 cut(s) | 1496 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 990, 1022 |
| Alw21I | GWGCWC | 2 cut(s) | 87, 933 |
| Alw26I | GTCTC | 6 cut(s) | 131, 894, 2259, 2957, 3234, 3455 |
| AlwI | GGATC | 3 cut(s) | 1107, 2400, 2601 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2633, 2888 |
| Ama87I | CYCGRG | 1 cut(s) | 500 |
| AoxI | GGCC | 5 cut(s) | 1212, 1934, 1991, 2187, 2774 |
| ApaI | GGGCCC | 1 cut(s) | 1995 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 672, 704, 1007, 1039 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1005, 2079 |
| AspLEI | GCGC | 1 cut(s) | 677 |
| AspS9I | GGNCC | 6 cut(s) | 350, 1212, 1721, 1991, 1992, 3098 |
| AsuC2I | CCSGG | 1 cut(s) | 1538 |
| AsuHPI | GGTGA | 7 cut(s) | 878, 1022, 2602, 2735, 3014, 3169, 3239 |
| AvaI | CYCGRG | 1 cut(s) | 500 |
| AvaII | GGWCC | 3 cut(s) | 350, 1721, 3098 |
| BaeGI | GKGCMC | 3 cut(s) | 877, 945, 1995 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3030, 3063 |
| BanI | GGYRCC | 1 cut(s) | 93 |
| BanII | GRGCYC | 4 cut(s) | 87, 501, 1995, 2147 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1345, 1377 |
| BbsI | GAAGAC | 3 cut(s) | 633, 2522, 3475 |
| Bbv12I | GWGCWC | 2 cut(s) | 87, 933 |
| BceAI | ACGGC | 3 cut(s) | 900, 1439, 1546 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 538, 572 |
| BciT130I | CCWGG | 3 cut(s) | 1158, 1896, 2125 |
| BciVI | GTATCC | 1 cut(s) | 687 |
| BclI | TGATCA | 2 cut(s) | 757, 2446 |
| BcnI | CCSGG | 1 cut(s) | 1538 |
| BcoDI | GTCTC | 6 cut(s) | 131, 894, 2259, 2957, 3234, 3455 |
| BfaI | CTAG | 8 cut(s) | 443, 887, 926, 1010, 1193, 1376, 2112, 2706 |
| BfoI | RGCGCY | 1 cut(s) | 678 |
| BfrI | CTTAAG | 2 cut(s) | 418, 2240 |
| BfuAI | ACCTGC | 1 cut(s) | 2448 |
| BfuI | GTATCC | 1 cut(s) | 687 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3260 |
| BglII | AGATCT | 2 cut(s) | 2821, 3087 |
| BmcAI | AGTACT | 1 cut(s) | 2288 |
| Bme1390I | CCNGG | 4 cut(s) | 1158, 1538, 1896, 2125 |
| Bme18I | GGWCC | 3 cut(s) | 350, 1721, 3098 |
| BmeT110I | CYCGRG | 1 cut(s) | 500 |
| BmgBI | CACGTC | 1 cut(s) | 3383 |
| BmgT120I | GGNCC | 6 cut(s) | 350, 1212, 1721, 1991, 1992, 3098 |
| BmiI | GGNNCC | 4 cut(s) | 95, 352, 1993, 3099 |
| BmrFI | CCNGG | 4 cut(s) | 1158, 1538, 1896, 2125 |
| BmrI | ACTGGG | 2 cut(s) | 2355, 2761 |
| BmsI | GCATC | 6 cut(s) | 1117, 1606, 2044, 2353, 2914, 3348 |
| BmuI | ACTGGG | 2 cut(s) | 2355, 2761 |
| BpiI | GAAGAC | 3 cut(s) | 633, 2522, 3475 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3227, 3259 |
| BpmI | CTGGAG | 1 cut(s) | 989 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 1166, 2836 |
| BpuMI | CCSGG | 1 cut(s) | 1538 |
| Bsa29I | ATCGAT | 1 cut(s) | 2517 |
| BsaAI | YACGTR | 2 cut(s) | 2267, 3294 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1302, 2136, 2301 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 5 cut(s) | 259, 1156, 2123, 3034, 3256 |
| BsaWI | WCCGGW | 2 cut(s) | 185, 1349 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 990, 1020 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 309, 2540, 2720, 2772, 2798, 3194 |
| Bse1I | ACTGG | 6 cut(s) | 972, 1937, 2161, 2350, 2767, 3163 |
| Bse3DI | GCAATG | 2 cut(s) | 3309, 3477 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1302, 2136, 2301 |
| BseBI | CCWGG | 3 cut(s) | 1158, 1896, 2125 |
| BseCI | ATCGAT | 1 cut(s) | 2517 |
| BseDI | CCNNGG | 5 cut(s) | 259, 1156, 2123, 3034, 3256 |
| BseGI | GGATG | 8 cut(s) | 979, 1106, 1604, 2083, 2368, 2862, 3339, 3462 |
| BseJI | GATNNNNATC | 3 cut(s) | 1302, 2136, 2301 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 309, 2540, 2720, 2772, 2798, 3194 |
| BseMI | GCAATG | 2 cut(s) | 3309, 3477 |
| BseMII | CTCAG | 8 cut(s) | 45, 869, 1506, 1664, 1817, 2113, 2264, 3492 |
| BseNI | ACTGG | 6 cut(s) | 972, 1937, 2161, 2350, 2767, 3163 |
| BseRI | GAGGAG | 2 cut(s) | 1479, 2238 |
| BseSI | GKGCMC | 3 cut(s) | 877, 945, 1995 |
| BsgI | GTGCAG | 2 cut(s) | 1097, 2238 |
| Bsh1236I | CGCG | 2 cut(s) | 71, 1882 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2035, 2517 |
| BshFI | GGCC | 5 cut(s) | 1214, 1936, 1993, 2189, 2776 |
| BshNI | GGYRCC | 1 cut(s) | 93 |
| BshVI | ATCGAT | 1 cut(s) | 2517 |
| BsiEI | CGRYCG | 2 cut(s) | 2035, 2517 |
| BsiHKAI | GWGCWC | 2 cut(s) | 87, 933 |
| BsiHKCI | CYCGRG | 1 cut(s) | 500 |
| BsiSI | CCGG | 3 cut(s) | 186, 1350, 1538 |
| BslFI | GGGAC | 3 cut(s) | 3082, 3210, 3408 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 309, 2540, 2720, 2772, 2798, 3194 |
| BsmAI | GTCTC | 6 cut(s) | 131, 894, 2259, 2957, 3234, 3455 |
| BsmFI | GGGAC | 3 cut(s) | 3082, 3210, 3408 |
| BsmI | GAATGC | 4 cut(s) | 2100, 2577, 2817, 2843 |
| BsnI | GGCC | 5 cut(s) | 1214, 1936, 1993, 2189, 2776 |
| BsoBI | CYCGRG | 1 cut(s) | 500 |
| Bsp120I | GGGCCC | 1 cut(s) | 1991 |
| Bsp1286I | GDGCHC | 7 cut(s) | 87, 501, 877, 933, 945, 1995, 2147 |
| Bsp1407I | TGTACA | 1 cut(s) | 3051 |
| Bsp19I | CCATGG | 2 cut(s) | 3034, 3256 |
| BspACI | CCGC | 8 cut(s) | 71, 74, 354, 535, 871, 1501, 3057, 3386 |
| BspANI | GGCC | 5 cut(s) | 1214, 1936, 1993, 2189, 2776 |
| BspCNI | CTCAG | 8 cut(s) | 46, 868, 1507, 1665, 1816, 2112, 2263, 3493 |
| BspDI | ATCGAT | 1 cut(s) | 2517 |
| BspFNI | CGCG | 2 cut(s) | 71, 1882 |
| BspHI | TCATGA | 3 cut(s) | 760, 1141, 2071 |
| BspLI | GGNNCC | 4 cut(s) | 95, 352, 1993, 3099 |
| BspMI | ACCTGC | 1 cut(s) | 2448 |
| BspPI | GGATC | 3 cut(s) | 1107, 2400, 2601 |
| BspQI | GCTCTTC | 1 cut(s) | 92 |
| BspT107I | GGYRCC | 1 cut(s) | 93 |
| BspTI | CTTAAG | 2 cut(s) | 418, 2240 |
| BsrBI | CCGCTC | 1 cut(s) | 871 |
| BsrDI | GCAATG | 2 cut(s) | 3309, 3477 |
| BsrGI | TGTACA | 1 cut(s) | 3051 |
| BsrI | ACTGG | 6 cut(s) | 972, 1937, 2161, 2350, 2767, 3163 |
| BssECI | CCNNGG | 5 cut(s) | 259, 1156, 2123, 3034, 3256 |
| BssNAI | GTATAC | 1 cut(s) | 3218 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 2 cut(s) | 3034, 3256 |
| Bst1107I | GTATAC | 1 cut(s) | 3218 |
| Bst2UI | CCWGG | 3 cut(s) | 1158, 1896, 2125 |
| Bst4CI | ACNGT | 7 cut(s) | 646, 1405, 1669, 2033, 2216, 2337, 3466 |
| Bst6I | CTCTTC | 6 cut(s) | 5, 12, 92, 184, 453, 2955 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 2 cut(s) | 418, 2240 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2327 |
| BstAUI | TGTACA | 1 cut(s) | 3051 |
| BstBAI | YACGTR | 2 cut(s) | 2267, 3294 |
| BstC8I | GCNNGC | 6 cut(s) | 873, 1396, 1499, 1880, 2686, 3252 |
| BstDEI | CTNAG | 9 cut(s) | 54, 855, 1273, 1515, 1673, 1803, 2099, 2250, 3501 |
| BstDSI | CCRYGG | 3 cut(s) | 259, 3034, 3256 |
| BstF5I | GGATG | 8 cut(s) | 979, 1106, 1604, 2083, 2368, 2862, 3339, 3462 |
| BstFNI | CGCG | 2 cut(s) | 71, 1882 |
| BstH2I | RGCGCY | 1 cut(s) | 678 |
| BstHHI | GCGC | 1 cut(s) | 677 |
| BstMAI | GTCTC | 6 cut(s) | 131, 894, 2259, 2957, 3234, 3455 |
| BstMCI | CGRYCG | 2 cut(s) | 2035, 2517 |
| BstNI | CCWGG | 3 cut(s) | 1158, 1896, 2125 |
| BstNSI | RCATGY | 3 cut(s) | 786, 2843, 3084 |
| BstSCI | CCNGG | 4 cut(s) | 1156, 1536, 1894, 2123 |
| BstSLI | GKGCMC | 3 cut(s) | 877, 945, 1995 |
| BstSNI | TACGTA | 1 cut(s) | 2267 |
| BstUI | CGCG | 2 cut(s) | 71, 1882 |
| BstV2I | GAAGAC | 3 cut(s) | 633, 2522, 3475 |
| BstX2I | RGATCY | 3 cut(s) | 2606, 2821, 3087 |
| BstYI | RGATCY | 3 cut(s) | 2606, 2821, 3087 |
| BstZ17I | GTATAC | 1 cut(s) | 3218 |
| Bsu15I | ATCGAT | 1 cut(s) | 2517 |
| BsuI | GTATCC | 1 cut(s) | 687 |
| BsuRI | GGCC | 5 cut(s) | 1214, 1936, 1993, 2189, 2776 |
| BsuTUI | ATCGAT | 1 cut(s) | 2517 |
| BtgI | CCRYGG | 3 cut(s) | 259, 3034, 3256 |
| BtrI | CACGTC | 1 cut(s) | 3383 |
| BtsCI | GGATG | 8 cut(s) | 979, 1106, 1604, 2083, 2368, 2862, 3339, 3462 |
| BtsIMutI | CAGTG | 6 cut(s) | 1665, 1704, 1842, 2107, 2168, 3156 |
| BveI | ACCTGC | 1 cut(s) | 2448 |
| Cac8I | GCNNGC | 6 cut(s) | 873, 1396, 1499, 1880, 2686, 3252 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2633, 2888 |
| CciI | TCATGA | 3 cut(s) | 760, 1141, 2071 |
| CfoI | GCGC | 1 cut(s) | 677 |
| Cfr13I | GGNCC | 6 cut(s) | 350, 1212, 1721, 1991, 1992, 3098 |
| ClaI | ATCGAT | 1 cut(s) | 2517 |
| CseI | GACGC | 1 cut(s) | 2804 |
| DdeI | CTNAG | 9 cut(s) | 54, 855, 1273, 1515, 1673, 1803, 2099, 2250, 3501 |
| DraI | TTTAAA | 1 cut(s) | 2376 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 2251, 2599 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 2251, 2599 |
| EaeI | YGGCCR | 1 cut(s) | 1934 |
| Eam1104I | CTCTTC | 6 cut(s) | 5, 12, 92, 184, 453, 2955 |
| EarI | CTCTTC | 6 cut(s) | 5, 12, 92, 184, 453, 2955 |
| Ecl136II | GAGCTC | 1 cut(s) | 85 |
| Eco105I | TACGTA | 1 cut(s) | 2267 |
| Eco130I | CCWWGG | 2 cut(s) | 3034, 3256 |
| Eco24I | GRGCYC | 4 cut(s) | 87, 501, 1995, 2147 |
| Eco32I | GATATC | 1 cut(s) | 1692 |
| Eco47I | GGWCC | 3 cut(s) | 350, 1721, 3098 |
| Eco53kI | GAGCTC | 1 cut(s) | 85 |
| Eco57I | CTGAAG | 6 cut(s) | 73, 621, 1680, 1818, 2660, 3518 |
| Eco88I | CYCGRG | 1 cut(s) | 500 |
| EcoICRI | GAGCTC | 1 cut(s) | 85 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1992, 3098 |
| EcoRI | GAATTC | 1 cut(s) | 2506 |
| EcoRII | CCWGG | 3 cut(s) | 1156, 1894, 2123 |
| EcoRV | GATATC | 1 cut(s) | 1692 |
| EcoT14I | CCWWGG | 2 cut(s) | 3034, 3256 |
| EcoT22I | ATGCAT | 1 cut(s) | 2845 |
| EcoT38I | GRGCYC | 4 cut(s) | 87, 501, 1995, 2147 |
| ErhI | CCWWGG | 2 cut(s) | 3034, 3256 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1240, 1272 |
| FaqI | GGGAC | 3 cut(s) | 3082, 3210, 3408 |
| FauI | CCCGC | 3 cut(s) | 361, 864, 3050 |
| FauNDI | CATATG | 2 cut(s) | 1581, 3126 |
| FbaI | TGATCA | 2 cut(s) | 757, 2446 |
| FblI | GTMKAC | 3 cut(s) | 174, 286, 3217 |
| FokI | GGATG | 8 cut(s) | 986, 1093, 1591, 2070, 2375, 2869, 3326, 3469 |
| FriOI | GRGCYC | 4 cut(s) | 87, 501, 1995, 2147 |
| FspBI | CTAG | 8 cut(s) | 443, 887, 926, 1010, 1193, 1376, 2112, 2706 |
| GlaI | GCGC | 1 cut(s) | 676 |
| GsuI | CTGGAG | 1 cut(s) | 989 |
| HaeII | RGCGCY | 1 cut(s) | 678 |
| HaeIII | GGCC | 5 cut(s) | 1214, 1936, 1993, 2189, 2776 |
| HapII | CCGG | 3 cut(s) | 186, 1350, 1538 |
| HgaI | GACGC | 1 cut(s) | 2804 |
| HhaI | GCGC | 1 cut(s) | 677 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 1 cut(s) | 675 |
| HinP1I | GCGC | 1 cut(s) | 675 |
| HincII | GTYRAC | 2 cut(s) | 175, 2644 |
| HindII | GTYRAC | 2 cut(s) | 175, 2644 |
| HindIII | AAGCTT | 3 cut(s) | 407, 1082, 2669 |
| HpaII | CCGG | 3 cut(s) | 186, 1350, 1538 |
| HphI | GGTGA | 7 cut(s) | 878, 1022, 2602, 2735, 3014, 3169, 3239 |
| Hpy166II | GTNNAC | 7 cut(s) | 175, 287, 331, 965, 1030, 2644, 3218 |
| Hpy8I | GTNNAC | 7 cut(s) | 175, 287, 331, 965, 1030, 2644, 3218 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 176, 2111 |
| HpyCH4III | ACNGT | 7 cut(s) | 646, 1405, 1669, 2033, 2216, 2337, 3466 |
| HpyCH4IV | ACGT | 5 cut(s) | 5, 2266, 3220, 3293, 3382 |
| HpyF3I | CTNAG | 9 cut(s) | 54, 855, 1273, 1515, 1673, 1803, 2099, 2250, 3501 |
| HpySE526I | ACGT | 5 cut(s) | 5, 2266, 3220, 3293, 3382 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 1 cut(s) | 675 |
| Ksp22I | TGATCA | 2 cut(s) | 757, 2446 |
| LguI | GCTCTTC | 1 cut(s) | 92 |
| LmnI | GCTCC | 3 cut(s) | 1466, 2768, 3235 |
| LweI | GCATC | 6 cut(s) | 1117, 1606, 2044, 2353, 2914, 3348 |
| MaeI | CTAG | 8 cut(s) | 443, 887, 926, 1010, 1193, 1376, 2112, 2706 |
| MaeII | ACGT | 5 cut(s) | 5, 2266, 3220, 3293, 3382 |
| MaeIII | GTNAC | 9 cut(s) | 121, 479, 640, 1160, 1360, 1433, 2492, 2590, 2803 |
| MbiI | CCGCTC | 1 cut(s) | 871 |
| MfeI | CAATTG | 1 cut(s) | 2433 |
| MflI | RGATCY | 3 cut(s) | 2606, 2821, 3087 |
| MhlI | GDGCHC | 7 cut(s) | 87, 501, 877, 933, 945, 1995, 2147 |
| MmeI | TCCRAC | 7 cut(s) | 39, 569, 973, 976, 2111, 2330, 3358 |
| Mph1103I | ATGCAT | 1 cut(s) | 2845 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1005, 2079 |
| MslI | CAYNNNNRTG | 4 cut(s) | 398, 1070, 1449, 1496 |
| MspA1I | CMGCKG | 2 cut(s) | 3057, 3500 |
| MspCI | CTTAAG | 2 cut(s) | 418, 2240 |
| MspI | CCGG | 3 cut(s) | 186, 1350, 1538 |
| MspR9I | CCNGG | 4 cut(s) | 1158, 1538, 1896, 2125 |
| MunI | CAATTG | 1 cut(s) | 2433 |
| Mva1269I | GAATGC | 4 cut(s) | 2100, 2577, 2817, 2843 |
| MvaI | CCWGG | 3 cut(s) | 1158, 1896, 2125 |
| MvnI | CGCG | 2 cut(s) | 71, 1882 |
| NciI | CCSGG | 1 cut(s) | 1538 |
| NcoI | CCATGG | 2 cut(s) | 3034, 3256 |
| NdeI | CATATG | 2 cut(s) | 1581, 3126 |
| NlaIV | GGNNCC | 4 cut(s) | 95, 352, 1993, 3099 |
| NmuCI | GTSAC | 2 cut(s) | 1160, 2590 |
| NsiI | ATGCAT | 1 cut(s) | 2845 |
| NspI | RCATGY | 3 cut(s) | 786, 2843, 3084 |
| OliI | CACNNNNGTG | 1 cut(s) | 1496 |
| PaeR7I | CTCGAG | 1 cut(s) | 500 |
| PagI | TCATGA | 3 cut(s) | 760, 1141, 2071 |
| PciI | ACATGT | 2 cut(s) | 782, 3080 |
| PciSI | GCTCTTC | 1 cut(s) | 92 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 171, 3379 |
| PctI | GAATGC | 4 cut(s) | 2100, 2577, 2817, 2843 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1005, 2079 |
| PfeI | GAWTC | 4 cut(s) | 245, 1840, 2519, 2879 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2798 |
| Ple19I | CGATCG | 1 cut(s) | 2517 |
| Ppu21I | YACGTR | 2 cut(s) | 2267, 3294 |
| PpuMI | RGGWCCY | 1 cut(s) | 3098 |
| PscI | ACATGT | 2 cut(s) | 782, 3080 |
| PsiI | TTATAA | 1 cut(s) | 771 |
| Psp124BI | GAGCTC | 1 cut(s) | 87 |
| Psp5II | RGGWCCY | 1 cut(s) | 3098 |
| Psp6I | CCWGG | 3 cut(s) | 1156, 1894, 2123 |
| PspGI | CCWGG | 3 cut(s) | 1156, 1894, 2123 |
| PspN4I | GGNNCC | 4 cut(s) | 95, 352, 1993, 3099 |
| PspOMI | GGGCCC | 1 cut(s) | 1991 |
| PspPI | GGNCC | 6 cut(s) | 350, 1212, 1721, 1991, 1992, 3098 |
| PspPPI | RGGWCCY | 1 cut(s) | 3098 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2633, 2888 |
| PsuI | RGATCY | 3 cut(s) | 2606, 2821, 3087 |
| PvuI | CGATCG | 1 cut(s) | 2517 |
| PvuII | CAGCTG | 1 cut(s) | 3500 |
| RseI | CAYNNNNRTG | 4 cut(s) | 398, 1070, 1449, 1496 |
| SacI | GAGCTC | 1 cut(s) | 87 |
| SalI | GTCGAC | 1 cut(s) | 173 |
| SapI | GCTCTTC | 1 cut(s) | 92 |
| Sau96I | GGNCC | 6 cut(s) | 350, 1212, 1721, 1991, 1992, 3098 |
| ScaI | AGTACT | 1 cut(s) | 2288 |
| ScrFI | CCNGG | 4 cut(s) | 1158, 1538, 1896, 2125 |
| SduI | GDGCHC | 7 cut(s) | 87, 501, 877, 933, 945, 1995, 2147 |
| SfaNI | GCATC | 6 cut(s) | 1117, 1606, 2044, 2353, 2914, 3348 |
| Sfr274I | CTCGAG | 1 cut(s) | 500 |
| SinI | GGWCC | 3 cut(s) | 350, 1721, 3098 |
| SlaI | CTCGAG | 1 cut(s) | 500 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 398, 1070, 1449, 1496 |
| SmlI | CTYRAG | 6 cut(s) | 134, 418, 500, 1181, 2240, 2851 |
| SmoI | CTYRAG | 6 cut(s) | 134, 418, 500, 1181, 2240, 2851 |
| SnaBI | TACGTA | 1 cut(s) | 2267 |
| SsiI | CCGC | 8 cut(s) | 71, 74, 354, 535, 871, 1501, 3057, 3386 |
| SspI | AATATT | 4 cut(s) | 1630, 1948, 1978, 3491 |
| SspMI | CTAG | 8 cut(s) | 443, 887, 926, 1010, 1193, 1376, 2112, 2706 |
| SstI | GAGCTC | 1 cut(s) | 87 |
| StyD4I | CCNGG | 4 cut(s) | 1156, 1536, 1894, 2123 |
| StyI | CCWWGG | 2 cut(s) | 3034, 3256 |
| TaaI | ACNGT | 7 cut(s) | 646, 1405, 1669, 2033, 2216, 2337, 3466 |
| TaiI | ACGT | 5 cut(s) | 8, 2269, 3223, 3296, 3385 |
| TatI | WGTACW | 4 cut(s) | 654, 2286, 2332, 3051 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 4 cut(s) | 245, 1840, 2519, 2879 |
| TscAI | CASTG | 6 cut(s) | 1672, 1704, 1842, 2107, 2168, 3163 |
| TseFI | GTSAC | 2 cut(s) | 1160, 2590 |
| Tsp45I | GTSAC | 2 cut(s) | 1160, 2590 |
| TspGWI | ACGGA | 1 cut(s) | 363 |
| TspRI | CASTG | 6 cut(s) | 1672, 1704, 1842, 2107, 2168, 3163 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2798 |
| Vha464I | CTTAAG | 2 cut(s) | 418, 2240 |
| VpaK11BI | GGWCC | 3 cut(s) | 350, 1721, 3098 |
| XbaI | TCTAGA | 4 cut(s) | 886, 925, 1009, 1375 |
| XceI | RCATGY | 3 cut(s) | 786, 2843, 3084 |
| XhoI | CTCGAG | 1 cut(s) | 500 |
| XmiI | GTMKAC | 3 cut(s) | 174, 286, 3217 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1005, 2079 |
| XspI | CTAG | 8 cut(s) | 443, 887, 926, 1010, 1193, 1376, 2112, 2706 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| ZrmI | AGTACT | 1 cut(s) | 2288 |
| Zsp2I | ATGCAT | 1 cut(s) | 2845 |