Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Forward (+)

7332907 .. 7348086

Gene Structure 15180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07420.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3510 bp

ATGCAGCAGCATAAGAGGAGAACCAGTGCCGGAGACTTGGCTCACCTGCGTGAGCTGTTCCGGCACCACATCGACTCTTTCGATTACCTCATCACCGCCGGCCTCGGCGTCATGCTCCGTGACATCAAGCCCGTCCAAGTAGACAATCCTCTCACAGGAGAAACCCTTCGCATCTGGTTCGCCGATGATCCTATCCTAGGCCGTCCTCTTAAGGACCGGAGCAGCGAGCCTCTCTATCCTTTTGAATGTCGACAGACTCGAATTTCATACACAGGGAAATTGTTGGCAGACATTTATTTTCAGCGTGGGGATAAGGCTCCTGTTAGAGAGCAGTTCAATTTCGGCCAGTTTCCCATCATGCTCATGTCAAAGTGTTGCAATTTAAGAGGTCATGATCCTCAGCAGCTAGTTTCTTGCAAAGAAGAGGCATCAGAAATGGGTGGCTACTTCATTTTAAATGGGCTCGAGAGAGTTATTCGACCTGTTATATTGCCAAAGCGAAACTATCCAATGAGTACAGTGCGCAATTCATTTCGTGATAGAAAGGAAGGATATACAGATAAAGCAGTTGTGATAAGATGTGCAAGAGATGATCAGTCCTCAGTAACTGTCAAATTGTACTACCTGCAAAACGGAAGCGCAAGACTTGGTGTTTGGATACAGGGGAAGGAGTTCTTGCTTCCTGTGGGTCTTATTTTAAAGGCTCTTGTTGACACTCCTGATAATGAACTTTATGCGAGTTTGACATGCTGTTATCCTGGGAAATTTGAGAAAGGAAAGGGTGCTGTTGGCACTCAGCTTGTGGGTGAGAGGGCGCAAATCATTATAAATGAAGTAGTGGAGTTGGGTCTTTTCACTCGTGGTCAATGTCTAGAAAACATTGGGGAGCACTTCCAACCTCTAATGAGTGGCCTGGAGAATGAATCTTATTCAGTTGTTGGAGATGCCGTTCTTAAAGACTACATATTTGTTCACCTAGATAAGAATGAAGACAAATTTAATCTCCTCATATTCATGTTGCAGAAACTTTTTTCGCTGATGGATCAGACTTCGGTGCTTGACAACCCAGATTCCCTGCAAAATCAAGAAGTCTTGCTTCCTGGGCACTTGATTACCATATATCTCAAGGAAAAACTAGAGGATTGGTTGCAAAGGACCAAAAAACTTCTTCAAGATGAGATAAAAAAGGAAAACAACAATATCAATTTTGGCAGTGTCGATAGCTTAAAAAAGGTTCTGGATAAAAATCCGACTAGGCAAATCAGTTTAGCGGTTGAGAATATGTTGAAAACTGGAAGAATAAATACTCAAACAGGTCTAGATTTGCAGCAGAGAGCAGGCTTTTCAGTTCAGGCAGAAAGGCTTAACTTTTTACGTTTTCTATCCCATTTTCGTGCTGTTCATCGAGGGGCTTCATTTGCTGGGCTTCGTACCACAAGTGTTCGGAAATTGCTTCCCGAATCTTGGGGCTTCCTTTGCCCTGTGCACACACCTGATGGAGAGCCATGTGGCTTGTTGAACCATATGACTCGCACTTGTAGAATTACATCGTACTTTGATGCGCAAGGGAATATTAGAGATTTCACTAAGATTCGGATGTCTATTCTTAATGTTCTGATTGAAGTTGGAATGATTCCTTCACTGCCAATGTTGGTTCATGTGGGTCTTCCTGCCAATCTCTCTGTTCTTTTAGATGGTCGTGTTGTTGGTTATATATCTTCCACTCAAGTTGAGAAAGTTGTTGCTCATTTAAGGAAGCTGAAAGTGTCGGCTGCTTCAGTGATTCCAGATGACTTGGAAGTGGGATACGTTCCTCTCAGCATGGGTGGGGCATATCCTGGTCTCTACCTTTTCACTTCTCCTTCTAGATTTGTTCGGCCAGTTAAGAATATTTCGATTTCTGCTGTTGAAGGTCAAAACATTGAACTCATCGGGCCCTTTGAACAGGTGTTCATGGAAATAAAATGTCCTGATGGTCGAGATGGTGGAAGGAAAGATGCTTTCCCTGCAACTCATGAAGAAATTCATCCAACTGGGATGCTCAGTGTTGTTGCTAATCTTACTCCCTGGTCAGAACATAATCAGAGTCCACGGAATATGTACCAGTGTCAGATGGCAAAACAAACAATGGGTTTCTCATTACAAGCACTTCGCAATCGTGCAGATCAGAAGTTGTATCATCTGAAGACTCCTCAATCTCCCATCGTCCGCACAAAAACATATACAAATTACTGTGTAGATGAATATCCAACGGGTACAAATGCAATAGTTGCTGTACTGTCATATACTGGGTACGATATGGAGGATGCTATGATTCTAAGCAAGTCATCCGTAGATCGCGGAATGTTTCACGGACTAGTGTATCAGACGGAATCCGTTGACTTGTCTGATCAAAAGGGTAGGTCAGGATCCCAGAGATCGTTCAGGAGAAGTGCCGCCGATAAGTCACATCATTCTCTAATCGATTCGGATGGTCTTCCTTATGTGGGTCAGACAATAAACCCAGATGAACCCTATTATAGCATTTATGATGAGGTAAAAGGTGCCATAAGAACGACCAAACGAAAAGGGTCAGAGCCTGCTATTGTTGACTATGTTGCTATTGATGGGAAGAAGCATCTTCAGAAGGTGAACATACGGTTTCGGCACCCTAGAAACCCTATAATTGGTGATAAATTTAGCAGCCGACATGGACAAAAAGGAGTTTGCTCCCAGTTGTGGCCTGACATTGATATGCCATTTTCTGGAGTTACGGGAATGCGCCCAGATCTCATTATCAATCCACATGCATTTCCTTCAAGAATGACGATAGCCATGCTTCTGGAGTCGGTTGCTGCAAAGGGTGGTAGCTTACATGGAAAATTTGTTGATGCGACACCATTTGCTAATTCAGAGAAGAAAGTTAATGAAGAAACTAATGGAGAGAAATCCAAAACCCTTGTTGATGAACTTGGTGAAATGTTAAAGGTTAAAGGGTTTAACTACTATGGTGCTGAGGTATTATACAGTGGCGTCTATGGAACAGAACTCACGTGTGAGATCTTCATTGGTCCTGTTTATTATCAACGATTACGGCATATGGTTTCAGACAAATTTCAGGTTCGTTCTACAGGAATGGTAGATCAAGTCACACGGCAGCCTATAAAAGGACGAAAACGAGGTGGTGGTATACGTTTTGGTGAAATGGAAAGAGACTCCTTGCTTGCACATGGGGCAGCATATTTGCTGCACGATAGACTTCATACATGTTCTGATTATCACATTGCTGATGTATGTTCCCTTTGTGGATCCATCCTAACAACCTCATCAGTCCAGCCACAAGTACCAGTTCGTGAAATCCCGGGCATGCCCCCCATGAGAGCTCCCAAGAAGGTGACTTGCCATGCATGTAAGACAAGTAAAGGGATGGAGACGGTTGCAATGCCTTACGTGTTTAGATACTTAGCTGCTGAGTTAGCAGCTATGAACATAAAACTGAACCTCCAGTTGAGCAATGCAACTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1170

Amino Acids

131.04

Weight (kDa)

8.85

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_3	PF04565	114 - 177	7.6e-28	RNA polymerase Rpb2, domain 3
RNA_pol_Rpa2_4	PF06883	231 - 288	8.8e-22	RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb2_6	PF00562	346 - 715	9.3e-121	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	717 - 824	7.3e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AarI	CACCTGC	1 cut(s)	54
Acc16I	TGCGCA	2 cut(s)	524, 1563
Acc36I	ACCTGC	2 cut(s)	54, 633
AccB1I	GGYRCC	3 cut(s)	63, 2543, 2646
AccB7I	CCANNNNNTGG	1 cut(s)	2744
AccI	GTMKAC	3 cut(s)	141, 250, 3169
AccII	CGCG	1 cut(s)	2340
AciI	CCGC	5 cut(s)	96, 1271, 2209, 2340, 2436
AclWI	GGATC	7 cut(s)	182, 389, 1050, 2403, 2416, 3282, 3295
AcoI	YGGCCR	2 cut(s)	343, 1877
AcsI	RAATTY	7 cut(s)	261, 764, 995, 2022, 2675, 2861, 3092
AcuI	CTGAAG	3 cut(s)	1761, 2204, 2606
AcvI	CACGTG	1 cut(s)	3033
AcyI	GRCGYC	2 cut(s)	108, 3012
AfaI	GTAC	9 cut(s)	517, 620, 1432, 1553, 2102, 2257, 2277, 2294, 3324
AfiI	CCNNNNNNNGG	8 cut(s)	155, 197, 1464, 2486, 2666, 2718, 2744, 3146
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	3 cut(s)	3032, 3245, 3429
AhlI	ACTAGT	1 cut(s)	2356
AjnI	CCWGG	5 cut(s)	757, 912, 1099, 1837, 2066
AleI	CACNNNNGTG	1 cut(s)	48
AloI	GAACNNNNNNTCC	2 cut(s)	933, 965
Alw21I	GWGCWC	3 cut(s)	891, 1488, 3364
Alw26I	GTCTC	4 cut(s)	27, 1847, 3186, 3404
Alw44I	GTGCAC	1 cut(s)	1484
AlwI	GGATC	7 cut(s)	182, 389, 1050, 2403, 2416, 3282, 3295
AlwNI	CAGNNNCTG	2 cut(s)	608, 2579
Ama87I	CYCGRG	2 cut(s)	464, 3340
AoxI	GGCC	7 cut(s)	100, 199, 343, 910, 1877, 1934, 2720
ApaI	GGGCCC	1 cut(s)	1938
ApaLI	GTGCAC	1 cut(s)	1484
ApoI	RAATTY	7 cut(s)	261, 764, 995, 2022, 2675, 2861, 3092
ArsI	GACNNNNNNTTYG	4 cut(s)	636, 668, 950, 982
Asp700I	GAANNNNTTC	3 cut(s)	165, 671, 2022
AspA2I	CCTAGG	1 cut(s)	196
AspLEI	GCGC	5 cut(s)	525, 641, 817, 1564, 2763
AspS9I	GGNCC	5 cut(s)	214, 1155, 1934, 1935, 3050
AsuC2I	CCSGG	2 cut(s)	3341, 3342
AsuHPI	GGTGA	9 cut(s)	35, 85, 818, 965, 2641, 2681, 2966, 3191, 3385
AvaI	CYCGRG	2 cut(s)	464, 3340
AvaII	GGWCC	3 cut(s)	214, 1155, 3050
AvrII	CCTAGG	1 cut(s)	196
BaeGI	GKGCMC	3 cut(s)	1107, 1488, 1938
BaeI	ACNNNNGTAYC	2 cut(s)	2345, 2378
BamHI	GGATCC	2 cut(s)	2408, 3287
BanI	GGYRCC	3 cut(s)	63, 2543, 2646
BanII	GRGCYC	3 cut(s)	465, 1938, 3364
BarI	GAAGNNNNNNTAC	2 cut(s)	1288, 1320
BauI	CACGAG	1 cut(s)	858
BbrPI	CACGTG	1 cut(s)	3033
BbsI	GAAGAC	4 cut(s)	996, 1658, 2192, 2468
Bbv12I	GWGCWC	3 cut(s)	891, 1488, 3364
BbvCI	CCTCAGC	2 cut(s)	399, 2994
BceAI	ACGGC	4 cut(s)	186, 932, 3089, 3149
BcgI	CGANNNNNNTGC	4 cut(s)	160, 194, 2797, 2831
BciT130I	CCWGG	5 cut(s)	759, 914, 1101, 1839, 2068
BciVI	GTATCC	2 cut(s)	651, 1799
BclI	TGATCA	2 cut(s)	592, 2389
BcnI	CCSGG	2 cut(s)	3341, 3342
BcoDI	GTCTC	4 cut(s)	27, 1847, 3186, 3404
BcuI	ACTAGT	1 cut(s)	2356
BfmI	CTRYAG	1 cut(s)	3108
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	2 cut(s)	54, 633
BfuI	GTATCC	2 cut(s)	651, 1799
BglII	AGATCT	2 cut(s)	2767, 3039
BlnI	CCTAGG	1 cut(s)	196
Bme1390I	CCNGG	7 cut(s)	759, 914, 1101, 1839, 2068, 3341, 3342
Bme18I	GGWCC	3 cut(s)	214, 1155, 3050
BmeT110I	CYCGRG	2 cut(s)	464, 3340
BmgT120I	GGNCC	5 cut(s)	214, 1155, 1934, 1935, 3050
BmiI	GGNNCC	7 cut(s)	65, 318, 1936, 2410, 2545, 2648, 3289
BmrFI	CCNGG	7 cut(s)	759, 914, 1101, 1839, 2068, 3341, 3342
BmrI	ACTGGG	3 cut(s)	2043, 2298, 2707
BmsI	GCATC	9 cut(s)	180, 437, 934, 1549, 1987, 2028, 2296, 2626, 2860
BmuI	ACTGGG	3 cut(s)	2043, 2298, 2707
BpiI	GAAGAC	4 cut(s)	996, 1658, 2192, 2468
BpmI	CTGGAG	4 cut(s)	935, 2766, 2843, 3467
Bpu10I	CCTNAGC	2 cut(s)	399, 2994
BpuEI	CTTGAG	2 cut(s)	1109, 1710
BpuMI	CCSGG	2 cut(s)	3341, 3342
Bsa29I	ATCGAT	1 cut(s)	2463
BsaAI	YACGTR	2 cut(s)	3033, 3430
BsaBI	GATNNNNATC	2 cut(s)	1245, 2244
BsaHI	GRCGYC	2 cut(s)	108, 3012
BsaI	GGTCTC	1 cut(s)	1847
BsaJI	CCNNGG	7 cut(s)	103, 196, 758, 1100, 2066, 2090, 3340
BsaWI	WCCGGW	1 cut(s)	216
BsaXI	ACNNNNNCTCC	6 cut(s)	10, 40, 933, 963, 3465, 3495
Bsc4I	CCNNNNNNNGG	8 cut(s)	155, 197, 1464, 2486, 2666, 2718, 2744, 3146
Bse118I	RCCGGY	1 cut(s)	98
Bse3DI	GCAATG	3 cut(s)	3261, 3426, 3499
Bse8I	GATNNNNATC	2 cut(s)	1245, 2244
BseBI	CCWGG	5 cut(s)	759, 914, 1101, 1839, 2068
BseCI	ATCGAT	1 cut(s)	2463
BseDI	CCNNGG	7 cut(s)	103, 196, 758, 1100, 2066, 2090, 3340
BseGI	GGATG	8 cut(s)	1602, 2026, 2043, 2311, 2327, 2476, 3291, 3411
BseJI	GATNNNNATC	2 cut(s)	1245, 2244
BseLI	CCNNNNNNNGG	8 cut(s)	155, 197, 1464, 2486, 2666, 2718, 2744, 3146
BseMI	GCAATG	3 cut(s)	3261, 3426, 3499
BseMII	CTCAG	7 cut(s)	413, 615, 809, 1831, 2056, 2985, 3441
BseRI	GAGGAG	3 cut(s)	31, 995, 2181
BseSI	GKGCMC	3 cut(s)	1107, 1488, 1938
BseYI	CCCAGC	1 cut(s)	1421
BsgI	GTGCAG	2 cut(s)	2181, 3212
Bsh1236I	CGCG	1 cut(s)	2340
BshFI	GGCC	7 cut(s)	102, 201, 345, 912, 1879, 1936, 2722
BshNI	GGYRCC	3 cut(s)	63, 2543, 2646
BshVI	ATCGAT	1 cut(s)	2463
BsiHKAI	GWGCWC	3 cut(s)	891, 1488, 3364
BsiHKCI	CYCGRG	2 cut(s)	464, 3340
BsiSI	CCGG	5 cut(s)	30, 61, 99, 217, 3341
BslI	CCNNNNNNNGG	8 cut(s)	155, 197, 1464, 2486, 2666, 2718, 2744, 3146
BsmAI	GTCTC	4 cut(s)	27, 1847, 3186, 3404
BsmBI	CGTCTC	1 cut(s)	3404
BsmI	GAATGC	1 cut(s)	2763
BsnI	GGCC	7 cut(s)	102, 201, 345, 912, 1879, 1936, 2722
Bso31I	GGTCTC	1 cut(s)	1847
BsoBI	CYCGRG	2 cut(s)	464, 3340
Bsp120I	GGGCCC	1 cut(s)	1934
Bsp1286I	GDGCHC	6 cut(s)	465, 891, 1107, 1488, 1938, 3364
BspACI	CCGC	5 cut(s)	96, 1271, 2209, 2340, 2436
BspANI	GGCC	7 cut(s)	102, 201, 345, 912, 1879, 1936, 2722
BspCNI	CTCAG	7 cut(s)	412, 614, 808, 1830, 2055, 2986, 3442
BspDI	ATCGAT	1 cut(s)	2463
BspFNI	CGCG	1 cut(s)	2340
BspHI	TCATGA	2 cut(s)	391, 2014
BspLI	GGNNCC	7 cut(s)	65, 318, 1936, 2410, 2545, 2648, 3289
BspMI	ACCTGC	2 cut(s)	54, 633
BspPI	GGATC	7 cut(s)	182, 389, 1050, 2403, 2416, 3282, 3295
BspT107I	GGYRCC	3 cut(s)	63, 2543, 2646
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	1847
BsrDI	GCAATG	3 cut(s)	3261, 3426, 3499
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	7 cut(s)	103, 196, 758, 1100, 2066, 2090, 3340
BssNAI	GTATAC	1 cut(s)	3170
BssNI	GRCGYC	2 cut(s)	108, 3012
BssSI	CACGAG	1 cut(s)	858
BssT1I	CCWWGG	1 cut(s)	196
Bst1107I	GTATAC	1 cut(s)	3170
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	5 cut(s)	759, 914, 1101, 1839, 2068
Bst4CI	ACNGT	7 cut(s)	520, 610, 2234, 2280, 2640, 3008, 3415
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	2 cut(s)	108, 3012
BstAFI	CTTAAG	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	2270
BstBAI	YACGTR	2 cut(s)	3033, 3430
BstC8I	GCNNGC	6 cut(s)	100, 227, 1339, 2580, 3204, 3347
BstDSI	CCRYGG	1 cut(s)	2090
BstENI	CCTNNNNNAGG	3 cut(s)	153, 195, 3144
BstF5I	GGATG	8 cut(s)	1602, 2026, 2043, 2311, 2327, 2476, 3291, 3411
BstFNI	CGCG	1 cut(s)	2340
BstHHI	GCGC	5 cut(s)	525, 641, 817, 1564, 2763
BstMAI	GTCTC	4 cut(s)	27, 1847, 3186, 3404
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 1102, 1418, 1476, 2006, 2270, 3212, 3455, 3503
BstNI	CCWGG	5 cut(s)	759, 914, 1101, 1839, 2068
BstNSI	RCATGY	5 cut(s)	750, 2789, 3249, 3349, 3390
BstSCI	CCNGG	7 cut(s)	757, 912, 1099, 1837, 2066, 3339, 3340
BstSFI	CTRYAG	1 cut(s)	3108
BstSLI	GKGCMC	3 cut(s)	1107, 1488, 1938
BstUI	CGCG	1 cut(s)	2340
BstV2I	GAAGAC	4 cut(s)	996, 1658, 2192, 2468
BstX2I	RGATCY	4 cut(s)	2408, 2767, 3039, 3287
BstXI	CCANNNNNNTGG	1 cut(s)	2821
BstYI	RGATCY	4 cut(s)	2408, 2767, 3039, 3287
BstZ17I	GTATAC	1 cut(s)	3170
Bsu15I	ATCGAT	1 cut(s)	2463
BsuI	GTATCC	2 cut(s)	651, 1799
BsuRI	GGCC	7 cut(s)	102, 201, 345, 912, 1879, 1936, 2722
BsuTUI	ATCGAT	1 cut(s)	2463
BtgI	CCRYGG	1 cut(s)	2090
BtsCI	GGATG	8 cut(s)	1602, 2026, 2043, 2311, 2327, 2476, 3291, 3411
BtsI	GCAGTG	2 cut(s)	1219, 1640
BtsIMutI	CAGTG	8 cut(s)	31, 525, 1219, 1640, 1785, 2050, 2111, 3013
BveI	ACCTGC	2 cut(s)	54, 633
Cac8I	GCNNGC	6 cut(s)	100, 227, 1339, 2580, 3204, 3347
CaiI	CAGNNNCTG	2 cut(s)	608, 2579
CciI	TCATGA	2 cut(s)	391, 2014
CfoI	GCGC	5 cut(s)	525, 641, 817, 1564, 2763
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	5 cut(s)	214, 1155, 1934, 1935, 3050
Cfr9I	CCCGGG	1 cut(s)	3340
ClaI	ATCGAT	1 cut(s)	2463
CseI	GACGC	2 cut(s)	97, 3001
Csp6I	GTAC	9 cut(s)	516, 619, 1431, 1552, 2101, 2256, 2276, 2293, 3323
CspCI	CAANNNNNGTGG	2 cut(s)	1711, 1746
CviQI	GTAC	9 cut(s)	516, 619, 1431, 1552, 2101, 2256, 2276, 2293, 3323
DraI	TTTAAA	2 cut(s)	456, 699
EaeI	YGGCCR	2 cut(s)	343, 1877
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	3362
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	3 cut(s)	465, 1938, 3364
Eco31I	GGTCTC	1 cut(s)	1847
Eco47I	GGWCC	3 cut(s)	214, 1155, 3050
Eco53kI	GAGCTC	1 cut(s)	3362
Eco57I	CTGAAG	3 cut(s)	1761, 2204, 2606
Eco72I	CACGTG	1 cut(s)	3033
Eco88I	CYCGRG	2 cut(s)	464, 3340
EcoICRI	GAGCTC	1 cut(s)	3362
EcoNI	CCTNNNNNAGG	3 cut(s)	153, 195, 3144
EcoO109I	RGGNCCY	1 cut(s)	1935
EcoRII	CCWGG	5 cut(s)	757, 912, 1099, 1837, 2066
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	2 cut(s)	2791, 3388
EcoT38I	GRGCYC	3 cut(s)	465, 1938, 3364
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	3404
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 1080, 1112
FauNDI	CATATG	2 cut(s)	1524, 3078
FbaI	TGATCA	2 cut(s)	592, 2389
FblI	GTMKAC	3 cut(s)	141, 250, 3169
FokI	GGATG	8 cut(s)	1609, 2013, 2050, 2314, 2318, 2483, 3278, 3418
FriOI	GRGCYC	3 cut(s)	465, 1938, 3364
FspI	TGCGCA	2 cut(s)	524, 1563
GlaI	GCGC	5 cut(s)	524, 640, 816, 1563, 2762
GsaI	CCCAGC	1 cut(s)	1425
GsuI	CTGGAG	4 cut(s)	935, 2766, 2843, 3467
HaeIII	GGCC	7 cut(s)	102, 201, 345, 912, 1879, 1936, 2722
HapII	CCGG	5 cut(s)	30, 61, 99, 217, 3341
HgaI	GACGC	2 cut(s)	97, 3001
HhaI	GCGC	5 cut(s)	525, 641, 817, 1564, 2763
Hin1I	GRCGYC	2 cut(s)	108, 3012
Hin6I	GCGC	5 cut(s)	523, 639, 815, 1562, 2761
HinP1I	GCGC	5 cut(s)	523, 639, 815, 1562, 2761
HincII	GTYRAC	4 cut(s)	251, 712, 2380, 2590
HindII	GTYRAC	4 cut(s)	251, 712, 2380, 2590
HpaII	CCGG	5 cut(s)	30, 61, 99, 217, 3341
HphI	GGTGA	9 cut(s)	35, 85, 818, 965, 2641, 2681, 2966, 3191, 3385
HpyCH4III	ACNGT	7 cut(s)	520, 610, 2234, 2280, 2640, 3008, 3415
HpyCH4IV	ACGT	5 cut(s)	1375, 1809, 3032, 3172, 3429
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 1102, 1418, 1476, 2006, 2270, 3212, 3455, 3503
HpySE526I	ACGT	5 cut(s)	1375, 1809, 3032, 3172, 3429
Hsp92I	GRCGYC	2 cut(s)	108, 3012
HspAI	GCGC	5 cut(s)	523, 639, 815, 1562, 2761
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	2 cut(s)	592, 2389
LmnI	GCTCC	7 cut(s)	120, 219, 322, 886, 2714, 3367, 3503
LweI	GCATC	9 cut(s)	180, 437, 934, 1549, 1987, 2028, 2296, 2626, 2860
MaeII	ACGT	5 cut(s)	1375, 1809, 3032, 3172, 3429
MaeIII	GTNAC	6 cut(s)	119, 604, 2445, 2749, 3127, 3373
MflI	RGATCY	4 cut(s)	2408, 2767, 3039, 3287
MhlI	GDGCHC	6 cut(s)	465, 891, 1107, 1488, 1938, 3364
MlyI	GAGTC	7 cut(s)	68, 250, 1522, 2095, 2182, 2834, 3188
MmeI	TCCRAC	6 cut(s)	919, 919, 1274, 1606, 2054, 2273
Mph1103I	ATGCAT	2 cut(s)	2791, 3388
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	3 cut(s)	165, 671, 2022
MslI	CAYNNNNRTG	5 cut(s)	48, 362, 1013, 1392, 2732
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	5 cut(s)	30, 61, 99, 217, 3341
MspR9I	CCNGG	7 cut(s)	759, 914, 1101, 1839, 2068, 3341, 3342
Mva1269I	GAATGC	1 cut(s)	2763
MvaI	CCWGG	5 cut(s)	759, 914, 1101, 1839, 2068
MvnI	CGCG	1 cut(s)	2340
MwoI	GCNNNNNNNGC	9 cut(s)	61, 1102, 1418, 1476, 2006, 2270, 3212, 3455, 3503
NaeI	GCCGGC	1 cut(s)	100
NciI	CCSGG	2 cut(s)	3341, 3342
NdeI	CATATG	2 cut(s)	1524, 3078
NgoMIV	GCCGGC	1 cut(s)	98
NlaIV	GGNNCC	7 cut(s)	65, 318, 1936, 2410, 2545, 2648, 3289
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	4 cut(s)	119, 2445, 3127, 3373
NsbI	TGCGCA	2 cut(s)	524, 1563
NsiI	ATGCAT	2 cut(s)	2791, 3388
NspI	RCATGY	5 cut(s)	750, 2789, 3249, 3349, 3390
OliI	CACNNNNGTG	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	3349
PaeR7I	CTCGAG	1 cut(s)	464
PagI	TCATGA	2 cut(s)	391, 2014
PaqCI	CACCTGC	1 cut(s)	54
PciI	ACATGT	1 cut(s)	3245
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 256
PctI	GAATGC	1 cut(s)	2763
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	3 cut(s)	165, 671, 2022
PfeI	GAWTC	9 cut(s)	923, 1070, 1460, 1591, 1633, 1783, 2314, 2372, 2465
PflMI	CCANNNNNTGG	1 cut(s)	2744
PleI	GAGTC	7 cut(s)	68, 250, 1522, 2094, 2182, 2833, 3188
PmaCI	CACGTG	1 cut(s)	3033
PmlI	CACGTG	1 cut(s)	3033
PpsI	GAGTC	7 cut(s)	68, 250, 1522, 2094, 2182, 2833, 3188
Ppu21I	YACGTR	2 cut(s)	3033, 3430
PscI	ACATGT	1 cut(s)	3245
PsiI	TTATAA	1 cut(s)	827
Psp124BI	GAGCTC	1 cut(s)	3364
Psp6I	CCWGG	5 cut(s)	757, 912, 1099, 1837, 2066
PspCI	CACGTG	1 cut(s)	3033
PspFI	CCCAGC	1 cut(s)	1421
PspGI	CCWGG	5 cut(s)	757, 912, 1099, 1837, 2066
PspN4I	GGNNCC	7 cut(s)	65, 318, 1936, 2410, 2545, 2648, 3289
PspOMI	GGGCCC	1 cut(s)	1934
PspPI	GGNCC	5 cut(s)	214, 1155, 1934, 1935, 3050
PstNI	CAGNNNCTG	2 cut(s)	608, 2579
PsuI	RGATCY	4 cut(s)	2408, 2767, 3039, 3287
RsaI	GTAC	9 cut(s)	517, 620, 1432, 1553, 2102, 2257, 2277, 2294, 3324
RsaNI	GTAC	9 cut(s)	516, 619, 1431, 1552, 2101, 2256, 2276, 2293, 3323
RseI	CAYNNNNRTG	5 cut(s)	48, 362, 1013, 1392, 2732
SacI	GAGCTC	1 cut(s)	3364
SalI	GTCGAC	1 cut(s)	249
Sau96I	GGNCC	5 cut(s)	214, 1155, 1934, 1935, 3050
SchI	GAGTC	7 cut(s)	68, 250, 1522, 2095, 2182, 2834, 3188
ScrFI	CCNGG	7 cut(s)	759, 914, 1101, 1839, 2068, 3341, 3342
SduI	GDGCHC	6 cut(s)	465, 891, 1107, 1488, 1938, 3364
SfaNI	GCATC	9 cut(s)	180, 437, 934, 1549, 1987, 2028, 2296, 2626, 2860
SfcI	CTRYAG	1 cut(s)	3108
Sfr274I	CTCGAG	1 cut(s)	464
SinI	GGWCC	3 cut(s)	214, 1155, 3050
SlaI	CTCGAG	1 cut(s)	464
SmaI	CCCGGG	1 cut(s)	3342
SmiMI	CAYNNNNRTG	5 cut(s)	48, 362, 1013, 1392, 2732
SmlI	CTYRAG	4 cut(s)	209, 464, 1124, 1725
SmoI	CTYRAG	4 cut(s)	209, 464, 1124, 1725
SpeI	ACTAGT	1 cut(s)	2356
SphI	GCATGC	1 cut(s)	3349
SsiI	CCGC	5 cut(s)	96, 1271, 2209, 2340, 2436
SspI	AATATT	2 cut(s)	1573, 1891
SstI	GAGCTC	1 cut(s)	3364
StyD4I	CCNGG	7 cut(s)	757, 912, 1099, 1837, 2066, 3339, 3340
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	7 cut(s)	520, 610, 2234, 2280, 2640, 3008, 3415
TaiI	ACGT	5 cut(s)	1378, 1812, 3035, 3175, 3432
TatI	WGTACW	3 cut(s)	515, 618, 2275
TauI	GCSGC	1 cut(s)	2438
TfiI	GAWTC	9 cut(s)	923, 1070, 1460, 1591, 1633, 1783, 2314, 2372, 2465
TscAI	CASTG	8 cut(s)	31, 525, 1219, 1647, 1785, 2050, 2111, 3013
TseFI	GTSAC	4 cut(s)	119, 2445, 3127, 3373
Tsp45I	GTSAC	4 cut(s)	119, 2445, 3127, 3373
TspGWI	ACGGA	7 cut(s)	107, 648, 2107, 2320, 2365, 2367, 2384
TspMI	CCCGGG	1 cut(s)	3340
TspRI	CASTG	8 cut(s)	31, 525, 1219, 1647, 1785, 2050, 2111, 3013
Van91I	CCANNNNNTGG	1 cut(s)	2744
Vha464I	CTTAAG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	1484
VpaK11BI	GGWCC	3 cut(s)	214, 1155, 3050
XagI	CCTNNNNNAGG	3 cut(s)	153, 195, 3144
XapI	RAATTY	7 cut(s)	261, 764, 995, 2022, 2675, 2861, 3092
XbaI	TCTAGA	3 cut(s)	871, 1318, 1865
XceI	RCATGY	5 cut(s)	750, 2789, 3249, 3349, 3390
XhoI	CTCGAG	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	3340
XmaJI	CCTAGG	1 cut(s)	196
XmiI	GTMKAC	3 cut(s)	141, 250, 3169
XmnI	GAANNNNTTC	3 cut(s)	165, 671, 2022
Zsp2I	ATGCAT	2 cut(s)	2791, 3388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.