Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Reverse (-)

13555066 .. 13557917

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCAAAACAAACAACGGCCTTCTCTTTACAAGCACTTCGCTATAGTGTGGACCAAAAGTTGTATCATCTTCAGACCCCTCAATCTCCCATTGTACACACAAGTGCATATAAGAAGTACTGCATCGATGAATATCCAACCGGCACAAATGCAATCATTGCTTCATCTGTGGAGCGTGGAATGTTTCATGGACAAATACATCAGACAGAAACAGTTGACTTGTCTGATCAAATGAGCAGGTCAGATGGTTCTCGGAAATATTTCATGGAAAGTAACATTGAGAGGCATCGTTCAATTGATTCAGATGGGCTTCCTTGTGTTGGTCAGACAATAAAACCAGATGAAGAATATTATAGCATCTATAATGAGGTAAATAATGAGCAACATGCCGTCAAACAAAAAGGTTCAGAGGATGTTATCGTTGACTATGTTACTATGGATGGGAAGAAGCATCTTCAGAATCATCTGCAGAAGCATATGTTTTTACTGTCTGGTTTTCCTTTGTTATGCCCTTTTTATGTTGCAGGAAACCCTGTCATTGGTGATAAGTTTAGCAGCCGACATGGACAAAAAGGTGTTTGCTCCCAGTTGTGGCCTGATATTGATATTCCATTTTCTGAGGTTACGGGAATGTGTCCAGATCTTATCATCAATCCACATGCATTTCCTTTAAGGATGGCAATAGGAATGCTCTTGGAATCGATTGCTGCAAAGATCTTTATTGGTCCTGTTTATTATCAACGACTACAACATATGGTTCATTCCACTGGAATGGTAGATCAGATCACCAGCCAGCCCATTAAGGGACGAAAGGGAGGTGGAGGTATATGTTTTGGTGAAATAGAACGAGACTCGTTGCTTGCGCATGGGGCAGCCTATCTATTGCATGATAGGCTTCATACATGTTCTGATTATCACATTGCTGCTGTATGTTCCACATGTGGAAGCATCCTAACACCCTCAGCCATCAAGCCAGAGAAACGGGTTGCACGTGCAGTTAAGGAACTGCCCCCTGTAAGAACTCCCAAGGTCTTCTGTCATGCTTCTGATACGAATAAAGGGATGGAGACAGTTGCAATACCCTATGTCTTCAAATACTTAGCTGCTGAGTTAGCAGCTATGAGCATAAAAATGACCCTCCAGCTAAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

385

Amino Acids

42.77

Weight (kDa)

7.27

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	864
Acc36I	ACCTGC	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	56, 440
AcvI	CACGTG	1 cut(s)	992
AfaI	GTAC	2 cut(s)	96, 119
AfiI	CCNNNNNNNGG	4 cut(s)	320, 539, 591, 803
AflIII	ACRYGT	2 cut(s)	902, 938
AgsI	TTSAA	2 cut(s)	294, 1093
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	1103, 1118, 1144
AluI	AGCT	3 cut(s)	1103, 1118, 1144
Alw26I	GTCTC	2 cut(s)	843, 1061
AoxI	GGCC	2 cut(s)	18, 593
ApeKI	GCWGC	6 cut(s)	555, 707, 872, 923, 1103, 1115
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	2 cut(s)	52, 725
AsuHPI	GGTGA	3 cut(s)	554, 778, 848
AvaII	GGWCC	2 cut(s)	52, 725
BbrPI	CACGTG	1 cut(s)	992
BbsI	GAAGAC	2 cut(s)	1024, 1081
BbvCI	CCTCAGC	1 cut(s)	961
BbvI	GCAGC	6 cut(s)	567, 694, 884, 910, 1090, 1127
BccI	CCATC	6 cut(s)	239, 299, 434, 670, 974, 1057
BceAI	ACGGC	2 cut(s)	33, 374
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	843, 1061
BfmI	CTRYAG	2 cut(s)	43, 467
BfuAI	ACCTGC	1 cut(s)	228
BglII	AGATCT	2 cut(s)	640, 714
BisI	GCNGC	6 cut(s)	556, 708, 873, 924, 1104, 1116
BlsI	GCNGC	6 cut(s)	557, 709, 874, 925, 1105, 1117
BmcAI	AGTACT	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	52, 725
BmgT120I	GGNCC	2 cut(s)	52, 725
BmrI	ACTGGG	1 cut(s)	580
BmsI	GCATC	5 cut(s)	132, 295, 366, 460, 957
BmuI	ACTGGG	1 cut(s)	580
BpiI	GAAGAC	2 cut(s)	1024, 1081
BpmI	CTGGAG	1 cut(s)	1124
Bpu10I	CCTNAGC	1 cut(s)	961
Bsa29I	ATCGAT	2 cut(s)	126, 701
BsaAI	YACGTR	1 cut(s)	992
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	1026
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 539, 591, 803
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	586, 772
Bse3DI	GCAATG	2 cut(s)	156, 918
Bse8I	GATNNNNATC	1 cut(s)	132
BseCI	ATCGAT	2 cut(s)	126, 701
BseDI	CCNNGG	1 cut(s)	1026
BseGI	GGATG	5 cut(s)	418, 445, 681, 948, 1068
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	4 cut(s)	320, 539, 591, 803
BseMI	GCAATG	2 cut(s)	156, 918
BseMII	CTCAG	3 cut(s)	609, 975, 1098
BseNI	ACTGG	2 cut(s)	586, 772
BseXI	GCAGC	6 cut(s)	567, 694, 884, 910, 1090, 1127
BsgI	GTGCAG	1 cut(s)	1014
BshFI	GGCC	2 cut(s)	20, 595
BshVI	ATCGAT	2 cut(s)	126, 701
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	4 cut(s)	320, 539, 591, 803
BsmAI	GTCTC	2 cut(s)	843, 1061
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	20, 595
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	5 cut(s)	226, 640, 714, 778, 783
BspANI	GGCC	2 cut(s)	20, 595
BspCNI	CTCAG	3 cut(s)	610, 974, 1099
BspDI	ATCGAT	2 cut(s)	126, 701
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	156, 918
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	586, 772
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	1026
BssMI	GATC	5 cut(s)	226, 640, 714, 778, 783
BssT1I	CCWWGG	1 cut(s)	1026
Bst4CI	ACNGT	3 cut(s)	214, 489, 1072
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	794, 861
BstDEI	CTNAG	5 cut(s)	618, 961, 1099, 1107, 1145
BstF5I	GGATG	5 cut(s)	418, 445, 681, 948, 1068
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	5 cut(s)	229, 643, 717, 781, 786
BstMAI	GTCTC	2 cut(s)	843, 1061
BstMBI	GATC	5 cut(s)	226, 640, 714, 778, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 869, 892, 1112
BstNSI	RCATGY	4 cut(s)	389, 662, 906, 942
BstSFI	CTRYAG	2 cut(s)	43, 467
BstV1I	GCAGC	6 cut(s)	567, 694, 884, 910, 1090, 1127
BstV2I	GAAGAC	2 cut(s)	1024, 1081
BstX2I	RGATCY	2 cut(s)	640, 714
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	2 cut(s)	640, 714
Bsu15I	ATCGAT	2 cut(s)	126, 701
BsuRI	GGCC	2 cut(s)	20, 595
BsuTUI	ATCGAT	2 cut(s)	126, 701
BtsCI	GGATG	5 cut(s)	418, 445, 681, 948, 1068
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	794, 861
CfoI	GCGC	1 cut(s)	865
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	52, 725
ClaI	ATCGAT	2 cut(s)	126, 701
Csp6I	GTAC	2 cut(s)	95, 118
CviQI	GTAC	2 cut(s)	95, 118
DdeI	CTNAG	5 cut(s)	618, 961, 1099, 1107, 1145
DpnI	GATC	5 cut(s)	228, 642, 716, 780, 785
DpnII	GATC	5 cut(s)	226, 640, 714, 778, 783
Eco130I	CCWWGG	1 cut(s)	1026
Eco47I	GGWCC	2 cut(s)	52, 725
Eco57I	CTGAAG	2 cut(s)	56, 440
Eco72I	CACGTG	1 cut(s)	992
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	1026
FaqI	GGGAC	1 cut(s)	819
FauNDI	CATATG	2 cut(s)	477, 753
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	6 cut(s)	556, 708, 873, 924, 1104, 1116
FokI	GGATG	5 cut(s)	425, 452, 688, 935, 1075
Fsp4HI	GCNGC	6 cut(s)	556, 708, 873, 924, 1104, 1116
FspI	TGCGCA	1 cut(s)	864
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	6 cut(s)	556, 708, 873, 924, 1104, 1116
GsuI	CTGGAG	1 cut(s)	1124
HaeIII	GGCC	2 cut(s)	20, 595
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	865
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HincII	GTYRAC	2 cut(s)	217, 424
HindII	GTYRAC	2 cut(s)	217, 424
HinfI	GANTC	4 cut(s)	299, 460, 698, 851
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	554, 778, 848
Hpy166II	GTNNAC	4 cut(s)	52, 97, 217, 424
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	4 cut(s)	52, 97, 217, 424
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	3 cut(s)	214, 489, 1072
HpyCH4IV	ACGT	1 cut(s)	991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 869, 892, 1112
HpyF3I	CTNAG	5 cut(s)	618, 961, 1099, 1107, 1145
HpySE526I	ACGT	1 cut(s)	991
HspAI	GCGC	1 cut(s)	863
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	5 cut(s)	226, 640, 714, 778, 783
LmnI	GCTCC	2 cut(s)	172, 587
Lsp1109I	GCAGC	6 cut(s)	567, 694, 884, 910, 1090, 1127
LweI	GCATC	5 cut(s)	132, 295, 366, 460, 957
MaeII	ACGT	1 cut(s)	991
MaeIII	GTNAC	3 cut(s)	272, 430, 622
MalI	GATC	5 cut(s)	228, 642, 716, 780, 785
MboI	GATC	5 cut(s)	226, 640, 714, 778, 783
MboII	GAAGA	6 cut(s)	62, 356, 446, 457, 1024, 1081
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	2 cut(s)	640, 714
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	9 cut(s)	90, 276, 361, 403, 613, 809, 815, 970, 1148
Mph1103I	ATGCAT	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	3 cut(s)	671, 801, 999
MslI	CAYNNNNRTG	3 cut(s)	102, 770, 1130
MspI	CCGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	158, 869, 892, 1112
NdeI	CATATG	2 cut(s)	477, 753
NdeII	GATC	5 cut(s)	226, 640, 714, 778, 783
NsbI	TGCGCA	1 cut(s)	864
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	4 cut(s)	389, 662, 906, 942
OliI	CACNNNNGTG	1 cut(s)	102
PciI	ACATGT	2 cut(s)	902, 938
PcsI	WCGNNNNNNNCGW	1 cut(s)	988
PctI	GAATGC	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	299, 460, 698
PkrI	GCNGC	6 cut(s)	557, 709, 874, 925, 1105, 1117
PleI	GAGTC	1 cut(s)	845
PmaCI	CACGTG	1 cut(s)	992
PmlI	CACGTG	1 cut(s)	992
PpsI	GAGTC	1 cut(s)	845
Ppu21I	YACGTR	1 cut(s)	992
PscI	ACATGT	2 cut(s)	902, 938
PspCI	CACGTG	1 cut(s)	992
PspPI	GGNCC	2 cut(s)	52, 725
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	2 cut(s)	640, 714
RsaI	GTAC	2 cut(s)	96, 119
RsaNI	GTAC	2 cut(s)	95, 118
RseI	CAYNNNNRTG	3 cut(s)	102, 770, 1130
SaqAI	TTAA	3 cut(s)	671, 801, 999
SatI	GCNGC	6 cut(s)	556, 708, 873, 924, 1104, 1116
Sau3AI	GATC	5 cut(s)	226, 640, 714, 778, 783
Sau96I	GGNCC	2 cut(s)	52, 725
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	1 cut(s)	845
SfaNI	GCATC	5 cut(s)	132, 295, 366, 460, 957
SfcI	CTRYAG	2 cut(s)	43, 467
SinI	GGWCC	2 cut(s)	52, 725
SmiMI	CAYNNNNRTG	3 cut(s)	102, 770, 1130
Sse9I	AATT	1 cut(s)	294
SspI	AATATT	2 cut(s)	260, 350
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	3 cut(s)	214, 489, 1072
TaiI	ACGT	1 cut(s)	994
TaqI	TCGA	2 cut(s)	126, 701
TasI	AATT	1 cut(s)	294
TatI	WGTACW	2 cut(s)	94, 117
TfiI	GAWTC	3 cut(s)	299, 460, 698
Tru1I	TTAA	3 cut(s)	671, 801, 999
Tru9I	TTAA	3 cut(s)	671, 801, 999
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	6 cut(s)	555, 707, 872, 923, 1103, 1115
TspDTI	ATGAA	7 cut(s)	144, 153, 176, 253, 357, 749, 887
TspRI	CASTG	1 cut(s)	772
VpaK11BI	GGWCC	2 cut(s)	52, 725
XceI	RCATGY	4 cut(s)	389, 662, 906, 942
XmnI	GAANNNNTTC	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.