Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Reverse (-)

17901790 .. 17904096

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G184700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGCAGGTCAGATGGTTCTCGGAAATATTTCATGGAAAGTAACATTGAGAGGCATCGTTCAATTGATTCAGATGGGCTTCCTTGTGTTGGTCAGACAATAAAACCAGATGAAGAATATTATAGCATCTATAATGAGGTAAATAATGAGCAACATGCCGTCAAACAAAAAGGTTCAGAGGATGTTATCGTTGACTATGTTACTATAGATGGGAAAAGGCATCTTCAGAATCATCTGCAGAAGTTTAGCAGCCGACATGGACAAAAAGGTGTTTGCTCCCAGTTGTGGCCTGATATTGATATGCCATTTTCTGAGGTTACAGGAATGCGTCCGGATCTTAACATCAATCCACATGCATTTCCTTCAAGGATGGCAATAGGAATGCTCTTGGAATCGATTGCTGCAAAGGTTCATTCCACTGGAATGGTAGATCAGATCACCAGCCAGCCCATCAAGGGACGAAAGGGAGGTGGAGGTATATGTTTTGGTGAAATAGAACGAGACTCGTTGCTTGCGCATGGGGCAGCCTATCTATTGCATGATAGGCTTCATACATGTTCTGATTATCACATTGCTGCTGTATGTTCCACATGTGGAAGCATCCTAACACCCTCAGTCATCAAGCCAGAGAAACGGGTTGCACATGCAGTTAAGGGACTGCCCCCTGTAAGAGCTCCCAAGGTCTTCTGTCATGCTTCGGATACGAATAAAGGGATGGAGACAGTTGCAATACCCTATGTCTTCAAATACTTAGCTGCTGAGTTAGCAGCTATGAGCATAAAAATGACCCTCCAGCTAAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

269

Amino Acids

29.59

Weight (kDa)

7.68

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	516
AccIII	TCCGGA	1 cut(s)	331
AclWI	GGATC	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	89, 285, 455
AflIII	ACRYGT	2 cut(s)	554, 590
AgsI	TTSAA	3 cut(s)	63, 366, 745
AluBI	AGCT	4 cut(s)	674, 755, 770, 796
AluI	AGCT	4 cut(s)	674, 755, 770, 796
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	2 cut(s)	495, 713
AlwI	GGATC	1 cut(s)	342
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	6 cut(s)	249, 401, 524, 575, 755, 767
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	430, 500
BanII	GRGCYC	1 cut(s)	676
BbsI	GAAGAC	2 cut(s)	676, 733
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	6 cut(s)	261, 388, 536, 562, 742, 779
BccI	CCATC	6 cut(s)	8, 68, 203, 364, 458, 709
BceAI	ACGGC	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	694
BcoDI	GTCTC	2 cut(s)	495, 713
BfmI	CTRYAG	2 cut(s)	204, 236
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	6 cut(s)	250, 402, 525, 576, 756, 768
BlsI	GCNGC	6 cut(s)	251, 403, 526, 577, 757, 769
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	4 cut(s)	64, 135, 229, 609
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	2 cut(s)	676, 733
BpmI	CTGGAG	1 cut(s)	776
Bsa29I	ATCGAT	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	678
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 285, 455
Bse1I	ACTGG	2 cut(s)	280, 424
Bse3DI	GCAATG	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	4 cut(s)	187, 375, 600, 720
BseLI	CCNNNNNNNGG	3 cut(s)	89, 285, 455
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	303, 627, 750
BseNI	ACTGG	2 cut(s)	280, 424
BseXI	GCAGC	6 cut(s)	261, 388, 536, 562, 742, 779
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	471, 669
BslI	CCNNNNNNNGG	3 cut(s)	89, 285, 455
BsmAI	GTCTC	2 cut(s)	495, 713
BsmFI	GGGAC	2 cut(s)	471, 669
BsmI	GAATGC	2 cut(s)	330, 387
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	334, 430, 435
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	304, 626, 751
BspDI	ATCGAT	1 cut(s)	395
BspEI	TCCGGA	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	240
BspPI	GGATC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	280, 424
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	3 cut(s)	334, 430, 435
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	724
BstC8I	GCNNGC	2 cut(s)	446, 513
BstDEI	CTNAG	5 cut(s)	312, 613, 751, 759, 797
BstF5I	GGATG	4 cut(s)	187, 375, 600, 720
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	3 cut(s)	337, 433, 438
BstMAI	GTCTC	2 cut(s)	495, 713
BstMBI	GATC	3 cut(s)	334, 430, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 544, 764
BstNSI	RCATGY	5 cut(s)	158, 356, 558, 594, 647
BstSFI	CTRYAG	2 cut(s)	204, 236
BstV1I	GCAGC	6 cut(s)	261, 388, 536, 562, 742, 779
BstV2I	GAAGAC	2 cut(s)	676, 733
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	395
BtsCI	GGATG	4 cut(s)	187, 375, 600, 720
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	446, 513
CfoI	GCGC	1 cut(s)	517
ClaI	ATCGAT	1 cut(s)	395
CseI	GACGC	1 cut(s)	317
DdeI	CTNAG	5 cut(s)	312, 613, 751, 759, 797
DpnI	GATC	3 cut(s)	336, 432, 437
DpnII	GATC	3 cut(s)	334, 430, 435
Ecl136II	GAGCTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	676
Eco53kI	GAGCTC	1 cut(s)	674
Eco57I	CTGAAG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	678
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	678
FaqI	GGGAC	2 cut(s)	471, 669
Fnu4HI	GCNGC	6 cut(s)	250, 402, 525, 576, 756, 768
FokI	GGATG	4 cut(s)	194, 382, 587, 727
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	6 cut(s)	250, 402, 525, 576, 756, 768
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	6 cut(s)	250, 402, 525, 576, 756, 768
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	517
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	68, 229, 392, 503
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	430, 500
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4V	TGCA	7 cut(s)	238, 356, 404, 538, 641, 647, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 544, 764
HpyF3I	CTNAG	5 cut(s)	312, 613, 751, 759, 797
HspAI	GCGC	1 cut(s)	515
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	334, 430, 435
LmnI	GCTCC	2 cut(s)	281, 679
Lsp1109I	GCAGC	6 cut(s)	261, 388, 536, 562, 742, 779
LweI	GCATC	4 cut(s)	64, 135, 229, 609
MaeIII	GTNAC	3 cut(s)	41, 199, 316
MalI	GATC	3 cut(s)	336, 432, 437
MboI	GATC	3 cut(s)	334, 430, 435
MboII	GAAGA	4 cut(s)	125, 215, 676, 733
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	8 cut(s)	45, 130, 172, 307, 461, 467, 622, 800
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	339, 651
MslI	CAYNNNNRTG	2 cut(s)	422, 782
MspI	CCGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	2 cut(s)	330, 387
MwoI	GCNNNNNNNGC	3 cut(s)	521, 544, 764
NdeII	GATC	3 cut(s)	334, 430, 435
NsbI	TGCGCA	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	5 cut(s)	158, 356, 558, 594, 647
PciI	ACATGT	2 cut(s)	554, 590
PctI	GAATGC	2 cut(s)	330, 387
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	68, 229, 392
PkrI	GCNGC	6 cut(s)	251, 403, 526, 577, 757, 769
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PscI	ACATGT	2 cut(s)	554, 590
Psp124BI	GAGCTC	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	422, 782
SacI	GAGCTC	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	339, 651
SatI	GCNGC	6 cut(s)	250, 402, 525, 576, 756, 768
Sau3AI	GATC	3 cut(s)	334, 430, 435
SchI	GAGTC	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	676
SfaNI	GCATC	4 cut(s)	64, 135, 229, 609
SfcI	CTRYAG	2 cut(s)	204, 236
SmiMI	CAYNNNNRTG	2 cut(s)	422, 782
Sse9I	AATT	1 cut(s)	63
SspI	AATATT	2 cut(s)	29, 119
SstI	GAGCTC	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	724
TaqI	TCGA	1 cut(s)	395
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	68, 229, 392
Tru1I	TTAA	2 cut(s)	339, 651
Tru9I	TTAA	2 cut(s)	339, 651
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	6 cut(s)	249, 401, 524, 575, 755, 767
TspDTI	ATGAA	4 cut(s)	22, 126, 401, 539
TspRI	CASTG	1 cut(s)	424
XceI	RCATGY	5 cut(s)	158, 356, 558, 594, 647
XmnI	GAANNNNTTC	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.