Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005765

Physical Location & Seq

Genomic Coordinates Reverse (-)

37114473 .. 37130626

Gene Structure 16154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGCAGCAGAAGAGGAGAACCTCCGCCGGAGACTTAAGCCACTTGCGCGAGCTGTTCCGGCACCACATAGAGTCATTCGACTACCTCATCACCGCCGGTCTCGGCGTCTTGCTCCGTGATATCAAGCCTTGTCGACAGACTAGAATTTCCTACACGGGTAAATTGTTGGCAGACATTTACTTTCAGCGTGATGATAAGGCTCCGGTCAGAGAGCAGTTAAATTTTGGCCAGTTTCCCATCATGCTCATGTCAAAGTGTTGCAACTTAAGAGGTCATGATCCTCAGCAGCTAGTTTCTTGCAAAGAAGAGTCATCAGAAATGGGTGGCTACTTCATTTTGAATGGGCTCGAGAGAGTTATTCGACCTGTTATATTGCCGAAGCGGAACTATCCAATGAGTACGGTGCGCAATTCATTTCGTGATCGAAAGGAAGGATATACAGATAAAGCAGTCGTGATAAGATGTGTAAGAGATGATCAGTCTTCAGTAACAGTCAAATTGTATTACCTGCAAAACGGAAGTGCAAGACTTGGTGTTTGGATACAGGGGAAGGAGTTCTTGCTTCCTGCTTTTATTGACACTCCTGATCGTGAAATTTTTGCGAGCTTGACATGCTGTTGTAACGAGAAATTTGAAAAAGAAAAAGGTGCTGTTGCCACTCAGCTTGTGGGTGAGAGGGCGCAAATTATTATAAATGAAGTGGCAGACTTGGGTCTTCGCACTCATCTTCAATGTCTAGAACACATTGGTGAGCACTTTCAACCTCTAATGGGTGGACTGGAGAATGAACCTTATTCAGTTATTCATGTTGCAGAAACTTTTTTCGCTTATGGATCAGACTTCGGTTCTCGACAACCCAGATTCCTTGCAAAATCAAGAAGTCTTACTCCCTGGCCATCTGATAACCATATATCTCAAGTCGATAGTTTAAAAAAGGTTCTGGAAAAAAATCCTACAAGGCAAATCAGTATGGCGATTGAGAATATGTTGAAAACTGGAAGAATTAATACTCAAACAGGCCTAGATTTGCAGCAGAGGGCGGGCTTTACAGTTCAGGCAGAAAGGCTTAATTTTTTACGATTTTTATCGCATTTTCGTGCTGTTCATCGAGGGGCTTCATTTGCTGGGCTTCGCACCACAAGTGTGCGAAAATTGCTTCCCGAATCCTGGGGTTTCCTTTGCCCTGTGCATACACCTGATGGAGAGCCATGTGGCTTGTTGAACCATATGACTCGCACTTGTAGAATTACATCGTACTTTGATGCACAAGGGAATATTAGAGATTTCTCTAAGATTCGAATGTCTATTCTTAATGTTCTCATCGAAGTTGGAATGACACCTTCACTGCCAATGTTGGTTCATGCCGGTCCTCCTGCGGATCTTTCTGTTCTTTTAGACGGTCGTCTTGTTGGTTATATATCTTCCAAACAAGTAGAGAGAGTTGTGGCTCATTTAAGGAAACTGAAAGTTTCAGCTGCTTCAGTGATTCCAGATGACTTGGAAGTGGGATACGTTCCTCTCAGCATGGGTGGGGCATATCCTGGTCTCTACCTTAACACTTCTCCTGCTAGATTTGTTCGGCCGGTTAAGAATATTTCGATTCCTGCTGTTGAAGGTCAAAATATTGAACTCATTGGGCCCTTTGAACAGATGGCAAAACAAACGATGGGTTTCTCATTACAAGCACTTTGCAATCGTGCAGATCAGAAGTTGTATCATCTGAAGACTCCTCAATCTCCCATCGTCCGCACAAAAACGTATACGAATTACTGTGTAGATGAATATCCAACGGGCACAAATGCAATCGTTGCTGTATTGTCGTATACCGGGTATGATATGGAGGATGCTATGATTCTGAGCAAGTCATCTGTAGATCGTGGAATGTTTCATGGACTAGTATATCAGACGGAATCCATTGACTTGTCTGATACAAAGGGTAGTAAATCCCAGAGATCGTTCAGGAGAAGTACCACTGATAAGTCACATCATTCTTTGATCGATTCAGATGGTCTTCCTTATGTGGGTCAGACAATAAAACCAGATGAACCCTATTATAGCACTTATGATGAGATAAAAGGTGCCATAAGAACAACCAAACGAAAGGGGTCGGAGCCTGCTATAGTTGACTATGTTGCTATTGATGGGAAGAAGCATCTTCAGAAGGTGAACATTAGGTTTCGGCACCCTAGAAACCCGATAATTGGTGATAAATTTAGCAGCCGACATGGACAAAAAGGAGTTTGCTCCCAGTTGTGGCCTGACATTGATATGCCATTTTCTGGAGTTACGGGAATGCGCCCAGATCTTATTATCAATCCACATGCATTTCCTTCAAGAATGACAATAGCCATGCTTTTGGAGTCGGTTGCTGCAAAGGGTGGTAGCTTACATGGAAAATATGTTGATGCGACACCATTTGCTAATTCAGAGGAGAAAGTTAATGAAGAAACTAATGGAGAGAAATCCAAAACCCTTGTTGATGAACTTGGTGAAATGTTAAAGGTTAAAGGGTTTAATTACCATGGTGCAGAGGTATTGTACAGTGGCGTCTATGGGACAGAACTCACATGTGAAATCTTTATTGGTCCTGTTTACTATCAACGATTACGGCATATGGTTTCAGACAAATTTCAGGTTCGCTCTACGGGAATGGTAGATCAAGTCACACGCCAGCCTATCAAAGGACGAAAACGAGGTGGCGGTATACGTTTTGGTGAAATGGAGAGAGACTCCTTGCTTGCACATGGGGCAGCATATTTGTTGCATGATAGACTTCATACATGTTCTGATTATCACATTGCTGACGTATGTTCCCTTTGTGGATCCATCCTAACAACCTCATCAGTCCAGCCACAAATACGGGTTCGTGAAATGCGGGGCTTGCCCCCTATGAGAGCTCCCAAGAAGGTAACTTGCCATGCATGTAAGTCGAGTAAAGGGATGGAGACGGTTGCAATGCCTTATGTCTTTAGATATTTAGCAGCTGAGTTAGCAGCTATGAACATAAAACTGACCCTCCAGTTGAGCAATGCAACTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpa2_4 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1014

Amino Acids

113.55

Weight (kDa)

9.12

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	43 - 352	6.1e-19	RNA polymerase beta subunit
RNA_pol_Rpb2_3	PF04565	353 - 416	9.8e-28	RNA polymerase Rpb2, domain 3
RNA_pol_Rpa2_4	PF06883	470 - 527	1.5e-21	RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb2_6	PF00562	549 - 898	1.2e-111	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	900 - 1007	8.6e-22	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29940
fragaria_vesca	FvH4_5g25870 FvH4_5g25870 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420 FvH4_7g07420
malus_domestica	MD08G1237100.v1.1 MD15G1428900.v1.1
prunus_persica	Prupe.1G574600_v2.0.a1 Prupe.1G574600_v2.0.a1 Prupe.7G107000_v2.0.a1 Prupe.7G184700_v2.0.a1 Prupe.7G223000_v2.0.a1
pyrus_communis	pycom08g20550
rosa_chinensis	RchiOBHm_Chr1g0339571 RchiOBHm_Chr1g0339591
rosa_laevigata	RLG00000029239
rosa_multiflora	Rmu_sc0015580.1_g000004
rosa_roxburghii	Rroxscaffold_4G00313560 Rroxscaffold_4G00313600
rosa_rugosa	Rorug01G0140100.1
rosa_samantha	Rh1AG158100 Rh1CG147600
rosa_wichuraiana	Rw1G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	516
AccB1I	GGYRCC	3 cut(s)	60, 2078, 2181
AccB7I	CCANNNNNTGG	1 cut(s)	2279
AccI	GTMKAC	4 cut(s)	133, 1760, 1823, 2704
AccII	CGCG	1 cut(s)	48
AciI	CCGC	8 cut(s)	24, 93, 382, 1040, 1376, 1747, 2700, 2875
AclWI	GGATC	5 cut(s)	272, 841, 1386, 2817, 2830
AcoI	YGGCCR	3 cut(s)	226, 893, 1580
AcsI	RAATTY	6 cut(s)	144, 220, 594, 629, 2210, 2627
AcuI	CTGAAG	4 cut(s)	468, 1464, 1742, 2141
AcyI	GRCGYC	2 cut(s)	105, 2547
AfaI	GTAC	4 cut(s)	400, 1256, 1969, 2540
AfiI	CCNNNNNNNGG	7 cut(s)	770, 1167, 2021, 2201, 2253, 2279, 2681
AflII	CTTAAG	2 cut(s)	34, 265
AflIII	ACRYGT	2 cut(s)	2567, 2780
AhlI	ACTAGT	1 cut(s)	1894
AjnI	CCWGG	3 cut(s)	890, 1166, 1540
AjuI	GAANNNNNNNTTGG	2 cut(s)	2565, 2597
AleI	CACNNNNGTG	2 cut(s)	747, 1142
Alw21I	GWGCWC	2 cut(s)	756, 2899
Alw26I	GTCTC	5 cut(s)	24, 104, 1550, 2721, 2939
AlwI	GGATC	5 cut(s)	272, 841, 1386, 2817, 2830
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	6 cut(s)	226, 893, 1018, 1580, 1637, 2255
ApaI	GGGCCC	1 cut(s)	1641
ApeKI	GCWGC	9 cut(s)	4, 286, 1030, 1475, 2217, 2369, 2750, 2981, 2993
ApoI	RAATTY	6 cut(s)	144, 220, 594, 629, 2210, 2627
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AseI	ATTAAT	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	4 cut(s)	48, 408, 682, 2298
AspS9I	GGNCC	4 cut(s)	1367, 1637, 1638, 2585
AsuC2I	CCSGG	1 cut(s)	1828
AsuHPI	GGTGA	7 cut(s)	82, 683, 761, 2176, 2216, 2501, 2726
AsuII	TTCGAA	1 cut(s)	1297
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	1367, 2585
BaeGI	GKGCMC	2 cut(s)	1641, 1796
BalI	TGGCCA	2 cut(s)	228, 895
BamHI	GGATCC	1 cut(s)	2822
BanI	GGYRCC	3 cut(s)	60, 2078, 2181
BanII	GRGCYC	3 cut(s)	348, 1641, 2899
BarI	GAAGNNNNNNTAC	2 cut(s)	991, 1023
BbsI	GAAGAC	4 cut(s)	474, 707, 1730, 2003
Bbv12I	GWGCWC	2 cut(s)	756, 2899
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	9 cut(s)	16, 298, 1042, 1462, 2229, 2356, 2762, 2993, 3005
BceAI	ACGGC	1 cut(s)	2624
BcgI	CGANNNNNNTGC	2 cut(s)	2910, 2944
BciT130I	CCWGG	3 cut(s)	892, 1168, 1542
BciVI	GTATCC	2 cut(s)	534, 1502
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	1828
BcoDI	GTCTC	5 cut(s)	24, 104, 1550, 2721, 2939
BcuI	ACTAGT	1 cut(s)	1894
BfaI	CTAG	7 cut(s)	141, 290, 737, 1022, 1569, 1895, 2187
BfmI	CTRYAG	2 cut(s)	1869, 2118
BfrI	CTTAAG	2 cut(s)	34, 265
BfuAI	ACCTGC	1 cut(s)	516
BfuI	GTATCC	2 cut(s)	534, 1502
BglII	AGATCT	1 cut(s)	2302
BisI	GCNGC	9 cut(s)	5, 287, 1031, 1476, 2218, 2370, 2751, 2982, 2994
BlsI	GCNGC	9 cut(s)	6, 288, 1032, 1477, 2219, 2371, 2752, 2983, 2995
Bme1390I	CCNGG	4 cut(s)	892, 1168, 1542, 1828
Bme18I	GGWCC	2 cut(s)	1367, 2585
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	1367, 1637, 1638, 2585
BmiI	GGNNCC	7 cut(s)	62, 201, 1639, 2080, 2112, 2183, 2824
BmrFI	CCNGG	4 cut(s)	892, 1168, 1542, 1828
BmrI	ACTGGG	1 cut(s)	2242
BmsI	GCATC	4 cut(s)	1252, 1834, 2161, 2395
BmuI	ACTGGG	1 cut(s)	2242
BoxI	GACNNNNGTC	2 cut(s)	711, 1401
BpiI	GAAGAC	4 cut(s)	474, 707, 1730, 2003
BplI	GAGNNNNNCTC	2 cut(s)	2714, 2746
BpmI	CTGGAG	3 cut(s)	800, 2301, 3002
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	1297
BpuEI	CTTGAG	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	1828
Bsa29I	ATCGAT	1 cut(s)	1998
BsaBI	GATNNNNATC	2 cut(s)	1084, 1782
BsaHI	GRCGYC	2 cut(s)	105, 2547
BsaI	GGTCTC	2 cut(s)	104, 1550
BsaJI	CCNNGG	3 cut(s)	890, 1167, 2521
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	3000, 3030
Bsc4I	CCNNNNNNNGG	7 cut(s)	770, 1167, 2021, 2201, 2253, 2279, 2681
Bse118I	RCCGGY	3 cut(s)	95, 1364, 1582
Bse1I	ACTGG	6 cut(s)	229, 783, 1000, 2248, 3019, 3040
Bse3DI	GCAATG	3 cut(s)	2796, 2961, 3034
Bse8I	GATNNNNATC	2 cut(s)	1084, 1782
BseBI	CCWGG	3 cut(s)	892, 1168, 1542
BseCI	ATCGAT	1 cut(s)	1998
BseDI	CCNNGG	3 cut(s)	890, 1167, 2521
BseGI	GGATG	3 cut(s)	1849, 2826, 2946
BseJI	GATNNNNATC	2 cut(s)	1084, 1782
BseLI	CCNNNNNNNGG	7 cut(s)	770, 1167, 2021, 2201, 2253, 2279, 2681
BseMI	GCAATG	3 cut(s)	2796, 2961, 3034
BseMII	CTCAG	5 cut(s)	296, 674, 1534, 1847, 2976
BseNI	ACTGG	6 cut(s)	229, 783, 1000, 2248, 3019, 3040
BseRI	GAGGAG	3 cut(s)	28, 1719, 2444
BseSI	GKGCMC	2 cut(s)	1641, 1796
BseX3I	CGGCCG	1 cut(s)	1580
BseXI	GCAGC	9 cut(s)	16, 298, 1042, 1462, 2229, 2356, 2762, 2993, 3005
BseYI	CCCAGC	1 cut(s)	1124
BsgI	GTGCAG	2 cut(s)	1719, 2547
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	2 cut(s)	1402, 1583
BshFI	GGCC	6 cut(s)	228, 895, 1020, 1582, 1639, 2257
BshNI	GGYRCC	3 cut(s)	60, 2078, 2181
BshVI	ATCGAT	1 cut(s)	1998
BsiEI	CGRYCG	2 cut(s)	1402, 1583
BsiHKAI	GWGCWC	2 cut(s)	756, 2899
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	7 cut(s)	27, 58, 96, 203, 1365, 1583, 1827
BslFI	GGGAC	1 cut(s)	2569
BslI	CCNNNNNNNGG	7 cut(s)	770, 1167, 2021, 2201, 2253, 2279, 2681
BsmAI	GTCTC	5 cut(s)	24, 104, 1550, 2721, 2939
BsmBI	CGTCTC	1 cut(s)	2939
BsmFI	GGGAC	1 cut(s)	2569
BsmI	GAATGC	1 cut(s)	2298
BsnI	GGCC	6 cut(s)	228, 895, 1020, 1582, 1639, 2257
Bso31I	GGTCTC	2 cut(s)	104, 1550
BsoBI	CYCGRG	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	1297
Bsp120I	GGGCCC	1 cut(s)	1637
Bsp1286I	GDGCHC	5 cut(s)	348, 756, 1641, 1796, 2899
Bsp1407I	TGTACA	1 cut(s)	2538
Bsp19I	CCATGG	1 cut(s)	2521
BspACI	CCGC	8 cut(s)	24, 93, 382, 1040, 1376, 1747, 2700, 2875
BspANI	GGCC	6 cut(s)	228, 895, 1020, 1582, 1639, 2257
BspCNI	CTCAG	5 cut(s)	295, 673, 1533, 1848, 2977
BspDI	ATCGAT	1 cut(s)	1998
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	7 cut(s)	62, 201, 1639, 2080, 2112, 2183, 2824
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	5 cut(s)	272, 841, 1386, 2817, 2830
BspT104I	TTCGAA	1 cut(s)	1297
BspT107I	GGYRCC	3 cut(s)	60, 2078, 2181
BspTI	CTTAAG	2 cut(s)	34, 265
BspTNI	GGTCTC	2 cut(s)	104, 1550
BsrDI	GCAATG	3 cut(s)	2796, 2961, 3034
BsrFI	RCCGGY	3 cut(s)	95, 1364, 1582
BsrGI	TGTACA	1 cut(s)	2538
BsrI	ACTGG	6 cut(s)	229, 783, 1000, 2248, 3019, 3040
BssAI	RCCGGY	3 cut(s)	95, 1364, 1582
BssECI	CCNNGG	3 cut(s)	890, 1167, 2521
BssNAI	GTATAC	3 cut(s)	1761, 1824, 2705
BssNI	GRCGYC	2 cut(s)	105, 2547
BssT1I	CCWWGG	1 cut(s)	2521
Bst1107I	GTATAC	3 cut(s)	1761, 1824, 2705
Bst2UI	CCWGG	3 cut(s)	892, 1168, 1542
Bst4CI	ACNGT	7 cut(s)	403, 493, 1051, 1400, 1772, 2543, 2950
Bst6I	CTCTTC	2 cut(s)	5, 300
BstACI	GRCGYC	2 cut(s)	105, 2547
BstAFI	CTTAAG	2 cut(s)	34, 265
BstAPI	GCANNNNNTGC	1 cut(s)	1808
BstAUI	TGTACA	1 cut(s)	2538
BstBI	TTCGAA	1 cut(s)	1297
BstC8I	GCNNGC	7 cut(s)	50, 604, 1042, 2115, 2672, 2739, 2882
BstDEI	CTNAG	6 cut(s)	282, 660, 1290, 1520, 1856, 2985
BstDSI	CCRYGG	1 cut(s)	2521
BstENI	CCTNNNNNAGG	1 cut(s)	2679
BstF5I	GGATG	3 cut(s)	1849, 2826, 2946
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	4 cut(s)	48, 408, 682, 2298
BstMAI	GTCTC	5 cut(s)	24, 104, 1550, 2721, 2939
BstMCI	CGRYCG	2 cut(s)	1402, 1583
BstNI	CCWGG	3 cut(s)	892, 1168, 1542
BstNSI	RCATGY	5 cut(s)	615, 2324, 2571, 2784, 2925
BstPAI	GACNNNNGTC	2 cut(s)	711, 1401
BstSCI	CCNGG	4 cut(s)	890, 1166, 1540, 1826
BstSFI	CTRYAG	2 cut(s)	1869, 2118
BstSLI	GKGCMC	2 cut(s)	1641, 1796
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	9 cut(s)	16, 298, 1042, 1462, 2229, 2356, 2762, 2993, 3005
BstV2I	GAAGAC	4 cut(s)	474, 707, 1730, 2003
BstX2I	RGATCY	3 cut(s)	1378, 2302, 2822
BstXI	CCANNNNNNTGG	1 cut(s)	2356
BstYI	RGATCY	3 cut(s)	1378, 2302, 2822
BstZ17I	GTATAC	3 cut(s)	1761, 1824, 2705
BstZI	CGGCCG	1 cut(s)	1580
Bsu15I	ATCGAT	1 cut(s)	1998
BsuI	GTATCC	2 cut(s)	534, 1502
BsuRI	GGCC	6 cut(s)	228, 895, 1020, 1582, 1639, 2257
BsuTUI	ATCGAT	1 cut(s)	1998
BtgI	CCRYGG	1 cut(s)	2521
BtsCI	GGATG	3 cut(s)	1849, 2826, 2946
BtsI	GCAGTG	1 cut(s)	1343
BtsIMutI	CAGTG	4 cut(s)	1343, 1488, 1971, 2548
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	7 cut(s)	50, 604, 1042, 2115, 2672, 2739, 2882
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	4 cut(s)	48, 408, 682, 2298
Cfr10I	RCCGGY	3 cut(s)	95, 1364, 1582
Cfr13I	GGNCC	4 cut(s)	1367, 1637, 1638, 2585
ClaI	ATCGAT	1 cut(s)	1998
CseI	GACGC	2 cut(s)	94, 2536
Csp6I	GTAC	4 cut(s)	399, 1255, 1968, 2539
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviQI	GTAC	4 cut(s)	399, 1255, 1968, 2539
DdeI	CTNAG	6 cut(s)	282, 660, 1290, 1520, 1856, 2985
DraI	TTTAAA	1 cut(s)	930
EaeI	YGGCCR	3 cut(s)	226, 893, 1580
EagI	CGGCCG	1 cut(s)	1580
Eam1104I	CTCTTC	2 cut(s)	5, 300
EarI	CTCTTC	2 cut(s)	5, 300
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	2897
EclXI	CGGCCG	1 cut(s)	1580
Eco130I	CCWWGG	1 cut(s)	2521
Eco147I	AGGCCT	1 cut(s)	1020
Eco24I	GRGCYC	3 cut(s)	348, 1641, 2899
Eco31I	GGTCTC	2 cut(s)	104, 1550
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	1367, 2585
Eco52I	CGGCCG	1 cut(s)	1580
Eco53kI	GAGCTC	1 cut(s)	2897
Eco57I	CTGAAG	4 cut(s)	468, 1464, 1742, 2141
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	2897
EcoNI	CCTNNNNNAGG	1 cut(s)	2679
EcoO109I	RGGNCCY	1 cut(s)	1638
EcoRII	CCWGG	3 cut(s)	890, 1166, 1540
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	2521
EcoT22I	ATGCAT	2 cut(s)	2326, 2923
EcoT38I	GRGCYC	3 cut(s)	348, 1641, 2899
ErhI	CCWWGG	1 cut(s)	2521
Esp3I	CGTCTC	1 cut(s)	2939
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	2569
FauI	CCCGC	2 cut(s)	1033, 2868
FauNDI	CATATG	2 cut(s)	1227, 2613
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	4 cut(s)	133, 1760, 1823, 2704
Fnu4HI	GCNGC	9 cut(s)	5, 287, 1031, 1476, 2218, 2370, 2751, 2982, 2994
FokI	GGATG	3 cut(s)	1856, 2813, 2953
FriOI	GRGCYC	3 cut(s)	348, 1641, 2899
Fsp4HI	GCNGC	9 cut(s)	5, 287, 1031, 1476, 2218, 2370, 2751, 2982, 2994
FspBI	CTAG	7 cut(s)	141, 290, 737, 1022, 1569, 1895, 2187
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	4 cut(s)	47, 407, 681, 2297
GluI	GCNGC	9 cut(s)	5, 287, 1031, 1476, 2218, 2370, 2751, 2982, 2994
GsaI	CCCAGC	1 cut(s)	1128
GsuI	CTGGAG	3 cut(s)	800, 2301, 3002
HaeIII	GGCC	6 cut(s)	228, 895, 1020, 1582, 1639, 2257
HapII	CCGG	7 cut(s)	27, 58, 96, 203, 1365, 1583, 1827
HgaI	GACGC	2 cut(s)	94, 2536
HhaI	GCGC	4 cut(s)	48, 408, 682, 2298
Hin1I	GRCGYC	2 cut(s)	105, 2547
Hin6I	GCGC	4 cut(s)	46, 406, 680, 2296
HinP1I	GCGC	4 cut(s)	46, 406, 680, 2296
HincII	GTYRAC	2 cut(s)	134, 2125
HindII	GTYRAC	2 cut(s)	134, 2125
HpaII	CCGG	7 cut(s)	27, 58, 96, 203, 1365, 1583, 1827
HphI	GGTGA	7 cut(s)	82, 683, 761, 2176, 2216, 2501, 2726
Hpy166II	GTNNAC	8 cut(s)	134, 776, 1761, 1824, 2125, 2167, 2593, 2705
Hpy8I	GTNNAC	8 cut(s)	134, 776, 1761, 1824, 2125, 2167, 2593, 2705
HpyAV	CCTTC	7 cut(s)	425, 544, 1350, 1607, 2155, 2340, 2899
HpyCH4III	ACNGT	7 cut(s)	403, 493, 1051, 1400, 1772, 2543, 2950
HpyCH4IV	ACGT	4 cut(s)	1512, 1757, 2707, 2805
HpyF3I	CTNAG	6 cut(s)	282, 660, 1290, 1520, 1856, 2985
HpySE526I	ACGT	4 cut(s)	1512, 1757, 2707, 2805
Hsp92I	GRCGYC	2 cut(s)	105, 2547
HspAI	GCGC	4 cut(s)	46, 406, 680, 2296
Ksp22I	TGATCA	1 cut(s)	475
LmnI	GCTCC	6 cut(s)	117, 205, 2110, 2249, 2902, 3038
Lsp1109I	GCAGC	9 cut(s)	16, 298, 1042, 1462, 2229, 2356, 2762, 2993, 3005
LweI	GCATC	4 cut(s)	1252, 1834, 2161, 2395
MaeI	CTAG	7 cut(s)	141, 290, 737, 1022, 1569, 1895, 2187
MaeII	ACGT	4 cut(s)	1512, 1757, 2707, 2805
MaeIII	GTNAC	6 cut(s)	487, 620, 1980, 2284, 2662, 2908
MflI	RGATCY	3 cut(s)	1378, 2302, 2822
MhlI	GDGCHC	5 cut(s)	348, 756, 1641, 1796, 2899
MlsI	TGGCCA	2 cut(s)	228, 895
MluNI	TGGCCA	2 cut(s)	228, 895
MlyI	GAGTC	6 cut(s)	80, 317, 1225, 1720, 2369, 2723
MmeI	TCCRAC	3 cut(s)	1309, 1811, 2088
Mox20I	TGGCCA	2 cut(s)	228, 895
Mph1103I	ATGCAT	2 cut(s)	2326, 2923
MroXI	GAANNNNTTC	1 cut(s)	554
MscI	TGGCCA	2 cut(s)	228, 895
MslI	CAYNNNNRTG	5 cut(s)	245, 747, 1095, 1142, 2267
Msp20I	TGGCCA	2 cut(s)	228, 895
MspA1I	CMGCKG	2 cut(s)	1475, 2984
MspCI	CTTAAG	2 cut(s)	34, 265
MspI	CCGG	7 cut(s)	27, 58, 96, 203, 1365, 1583, 1827
MspR9I	CCNGG	4 cut(s)	892, 1168, 1542, 1828
Mva1269I	GAATGC	1 cut(s)	2298
MvaI	CCWGG	3 cut(s)	892, 1168, 1542
MvnI	CGCG	1 cut(s)	48
NciI	CCSGG	1 cut(s)	1828
NcoI	CCATGG	1 cut(s)	2521
NdeI	CATATG	2 cut(s)	1227, 2613
NlaIV	GGNNCC	7 cut(s)	62, 201, 1639, 2080, 2112, 2183, 2824
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	1980, 2662
NsbI	TGCGCA	1 cut(s)	407
NsiI	ATGCAT	2 cut(s)	2326, 2923
NspI	RCATGY	5 cut(s)	615, 2324, 2571, 2784, 2925
NspV	TTCGAA	1 cut(s)	1297
OliI	CACNNNNGTG	2 cut(s)	747, 1142
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	1020
PciI	ACATGT	2 cut(s)	2567, 2780
PctI	GAATGC	1 cut(s)	2298
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	8 cut(s)	861, 1163, 1294, 1486, 1600, 1852, 1910, 2000
PflMI	CCANNNNNTGG	1 cut(s)	2279
PkrI	GCNGC	9 cut(s)	6, 288, 1032, 1477, 2219, 2371, 2752, 2983, 2995
PleI	GAGTC	6 cut(s)	79, 316, 1225, 1720, 2368, 2723
PpsI	GAGTC	6 cut(s)	79, 316, 1225, 1720, 2368, 2723
PscI	ACATGT	2 cut(s)	2567, 2780
PshAI	GACNNNNGTC	2 cut(s)	711, 1401
PshBI	ATTAAT	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	692
Psp124BI	GAGCTC	1 cut(s)	2899
Psp6I	CCWGG	3 cut(s)	890, 1166, 1540
PspFI	CCCAGC	1 cut(s)	1124
PspGI	CCWGG	3 cut(s)	890, 1166, 1540
PspN4I	GGNNCC	7 cut(s)	62, 201, 1639, 2080, 2112, 2183, 2824
PspOMI	GGGCCC	1 cut(s)	1637
PspPI	GGNCC	4 cut(s)	1367, 1637, 1638, 2585
PsuI	RGATCY	3 cut(s)	1378, 2302, 2822
PvuII	CAGCTG	2 cut(s)	1475, 2984
RsaI	GTAC	4 cut(s)	400, 1256, 1969, 2540
RsaNI	GTAC	4 cut(s)	399, 1255, 1968, 2539
RseI	CAYNNNNRTG	5 cut(s)	245, 747, 1095, 1142, 2267
SacI	GAGCTC	1 cut(s)	2899
SalI	GTCGAC	1 cut(s)	132
SatI	GCNGC	9 cut(s)	5, 287, 1031, 1476, 2218, 2370, 2751, 2982, 2994
Sau96I	GGNCC	4 cut(s)	1367, 1637, 1638, 2585
SchI	GAGTC	6 cut(s)	80, 317, 1225, 1720, 2369, 2723
ScrFI	CCNGG	4 cut(s)	892, 1168, 1542, 1828
SduI	GDGCHC	5 cut(s)	348, 756, 1641, 1796, 2899
SfaNI	GCATC	4 cut(s)	1252, 1834, 2161, 2395
SfcI	CTRYAG	2 cut(s)	1869, 2118
Sfr274I	CTCGAG	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	1297
SinI	GGWCC	2 cut(s)	1367, 2585
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	5 cut(s)	245, 747, 1095, 1142, 2267
SmlI	CTYRAG	4 cut(s)	34, 265, 347, 915
SmoI	CTYRAG	4 cut(s)	34, 265, 347, 915
SpeI	ACTAGT	1 cut(s)	1894
SseBI	AGGCCT	1 cut(s)	1020
SsiI	CCGC	8 cut(s)	24, 93, 382, 1040, 1376, 1747, 2700, 2875
SspI	AATATT	3 cut(s)	1276, 1594, 1624
SspMI	CTAG	7 cut(s)	141, 290, 737, 1022, 1569, 1895, 2187
SstI	GAGCTC	1 cut(s)	2899
StuI	AGGCCT	1 cut(s)	1020
StyD4I	CCNGG	4 cut(s)	890, 1166, 1540, 1826
StyI	CCWWGG	1 cut(s)	2521
TaaI	ACNGT	7 cut(s)	403, 493, 1051, 1400, 1772, 2543, 2950
TaiI	ACGT	4 cut(s)	1515, 1760, 2710, 2808
TatI	WGTACW	1 cut(s)	2538
TfiI	GAWTC	8 cut(s)	861, 1163, 1294, 1486, 1600, 1852, 1910, 2000
TscAI	CASTG	4 cut(s)	1350, 1488, 1978, 2548
TseFI	GTSAC	2 cut(s)	1980, 2662
TseI	GCWGC	9 cut(s)	4, 286, 1030, 1475, 2217, 2369, 2750, 2981, 2993
Tsp45I	GTSAC	2 cut(s)	1980, 2662
TspGWI	ACGGA	3 cut(s)	104, 531, 1922
TspRI	CASTG	4 cut(s)	1350, 1488, 1978, 2548
Van91I	CCANNNNNTGG	1 cut(s)	2279
Vha464I	CTTAAG	2 cut(s)	34, 265
VpaK11BI	GGWCC	2 cut(s)	1367, 2585
VspI	ATTAAT	1 cut(s)	1005
XagI	CCTNNNNNAGG	1 cut(s)	2679
XapI	RAATTY	6 cut(s)	144, 220, 594, 629, 2210, 2627
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	5 cut(s)	615, 2324, 2571, 2784, 2925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	4 cut(s)	133, 1760, 1823, 2704
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	7 cut(s)	141, 290, 737, 1022, 1569, 1895, 2187
Zsp2I	ATGCAT	2 cut(s)	2326, 2923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.