Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

10498310 .. 10499462

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29965.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGTGTTATCAGGCTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAGATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCAACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGATACCAGAGCCGTACAGGTTACCATAACATGTACAAAGAGTACCGTGACACTACTTTGAATGGAGCAGTGGAGCAAATGTACACTGAGATGGCGTCAAGACACAGAGTAAGGTTCCCTTGCATTCAGATTATTAAGACAGCAACAGTCCCAGCCTCTCTCTGCAAGAGGGAAAGCACGAAGCAGTTTCACAACAGCAAGATCAAGTTCCCGTTGGTCTTCAGGAAGGTTAGACCTCCCACCAGAAAGCTCAAGACTACCTTCAAGGCCAACAAGCCTAACTTGTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0022414 GO:0022625 GO:0022626 GO:0030054 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040007 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044706 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0061458 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

178

Amino Acids

21.28

Weight (kDa)

10.44

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	6 - 128	9.5e-25	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	6 cut(s)	26, 134, 259, 278, 287, 326
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflII	CTTAAG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	304, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	44, 91, 493
AluI	AGCT	3 cut(s)	44, 91, 493
Alw21I	GWGCWC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	194, 328
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BfaI	CTAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	139
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	359
BmsI	GCATC	1 cut(s)	168
BmtI	GCTAGC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	338
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	3
BseYI	CCCAGC	1 cut(s)	394
BshFI	GGCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	3 cut(s)	195, 219, 444
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	359
BspOI	GCTAGC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	139
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	195, 219, 444
BssNI	GRCGYC	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	290, 391
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	338
BstAFI	CTTAAG	1 cut(s)	139
BstAUI	TGTACA	2 cut(s)	276, 324
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	198, 222, 447
BstMBI	GATC	3 cut(s)	195, 219, 444
BstNSI	RCATGY	1 cut(s)	277
BstPI	GGTNACC	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	2 cut(s)	318, 327
Cac8I	GCNNGC	1 cut(s)	183
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	6 cut(s)	25, 133, 258, 277, 286, 325
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	16, 44, 91, 185, 255, 398, 493, 512, 520
CviKI_1	RGCY	9 cut(s)	16, 44, 91, 185, 255, 398, 493, 512, 520
CviQI	GTAC	6 cut(s)	25, 133, 258, 277, 286, 325
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	197, 221, 446
DpnII	GATC	3 cut(s)	195, 219, 444
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	94, 270, 275, 533
FalI	AAGNNNNNCTT	5 cut(s)	346, 378, 488, 520, 509
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	512
HgaI	GACGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	1 cut(s)	234
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	5 cut(s)	49, 223, 342, 466, 496
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	148, 463, 514
HpyCH4III	ACNGT	2 cut(s)	290, 391
HpyCH4V	TGCA	3 cut(s)	19, 366, 408
HpyF3I	CTNAG	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	195, 219, 444
LmnI	GCTCC	2 cut(s)	308, 316
LpnPI	CCDG	9 cut(s)	35, 67, 115, 223, 246, 263, 408, 451, 499
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	263, 290
MalI	GATC	3 cut(s)	197, 221, 446
MboI	GATC	3 cut(s)	195, 219, 444
MboII	GAAGA	4 cut(s)	172, 175, 217, 454
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	5 cut(s)	100, 138, 405, 409, 489
MseI	TTAA	2 cut(s)	140, 378
MslI	CAYNNNNRTG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	366
NdeII	GATC	3 cut(s)	195, 219, 444
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	18
PscI	ACATGT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	6 cut(s)	26, 134, 259, 278, 287, 326
RsaNI	GTAC	6 cut(s)	25, 133, 258, 277, 286, 325
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	140, 378
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	3 cut(s)	195, 219, 444
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	139, 494
SmoI	CTYRAG	2 cut(s)	139, 494
Sse9I	AATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	290, 391
TasI	AATT	1 cut(s)	226
TatI	WGTACW	2 cut(s)	276, 324
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	140, 378
Tru9I	TTAA	2 cut(s)	140, 378
TscAI	CASTG	2 cut(s)	318, 334
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	318, 334
Van91I	CCANNNNNTGG	1 cut(s)	129
Vha464I	CTTAAG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.