Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

3841941 .. 3843914

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G079200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTACTTTTAAGTTCCACCAGTACCAGGTTGTTGGGAGGAAGCTCCCTACGGCATCTGATGAGCACCCCAAGATTTACCGAATGAAGCTCTGGGCCACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAGGAAGCTGAAGAAGGTCAAGAAGAGCAATGGCCAAGTGCTTGCCATTAATGAGATATTTGAGAAGAACCCAACTACTATCAAGAACTATGGTATTTGGTTGCGGTATCAAAGCAGGACAGGTTATCATAACATGTACAAGGAGTACCGTGACACGACCCTCAACGGAGCTGTGGAGCAGATGTACATTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGTATCCAGATCATCAAGACTGCTACTATCCCGGCTAAACTTTGCAAGAGGGAAAGCACCAAGCAATTCCATAACTCCAAGATCAAGTTCCCATTGGTGTTCAGGAAAGTGAGGCCACCATCCAGGAAGTTGAAGACTACATACAAGGCATCGAGGCCCAACTTGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

179

Amino Acids

21.27

Weight (kDa)

10.49

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	5 cut(s)	7, 26, 278, 287, 326
AfiI	CCNNNNNNNGG	2 cut(s)	28, 129
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	496
AjnI	CCWGG	2 cut(s)	27, 485
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 434, 466
AluBI	AGCT	4 cut(s)	46, 91, 148, 311
AluI	AGCT	4 cut(s)	46, 91, 148, 311
Alw21I	GWGCWC	1 cut(s)	69
AoxI	GGCC	4 cut(s)	96, 172, 476, 518
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	96, 519
AsuC2I	CCSGG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	174
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	2 cut(s)	328, 490
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	2 cut(s)	29, 487
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	377
Bme1390I	CCNGG	3 cut(s)	29, 395, 487
BmgT120I	GGNCC	2 cut(s)	96, 519
BmrFI	CCNGG	3 cut(s)	29, 395, 487
BmsI	GCATC	2 cut(s)	65, 521
BpiI	GAAGAC	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 129
Bse1I	ACTGG	1 cut(s)	22
Bse21I	CCTNAGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	29, 487
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	28, 129
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	98, 174, 478, 520
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	28, 129
BsnI	GGCC	4 cut(s)	98, 174, 478, 520
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	2 cut(s)	372, 444
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	98, 174, 478, 520
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	372, 444
Bst2UI	CCWGG	2 cut(s)	29, 487
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	276, 324
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	482
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	375, 447
BstMBI	GATC	2 cut(s)	372, 444
BstNI	CCWGG	2 cut(s)	29, 487
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	3 cut(s)	27, 393, 485
BstUI	CGCG	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	4 cut(s)	98, 174, 478, 520
BtsCI	GGATG	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	96, 519
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	5 cut(s)	6, 25, 277, 286, 325
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	5 cut(s)	6, 25, 277, 286, 325
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	374, 446
DpnII	GATC	2 cut(s)	372, 444
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	27, 485
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	231, 270, 275, 435, 505
FatI	CATG	1 cut(s)	273
FokI	GGATG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	4 cut(s)	98, 174, 478, 520
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	6 cut(s)	139, 160, 223, 370, 379, 466
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	408
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	372, 444
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	3 cut(s)	51, 308, 316
LweI	GCATC	2 cut(s)	65, 521
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	374, 446
MboI	GATC	2 cut(s)	372, 444
MboII	GAAGA	4 cut(s)	163, 175, 217, 508
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	428
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	7 cut(s)	33, 100, 135, 311, 405, 468, 510
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	12, 189
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	29, 395, 487
MvaI	CCWGG	2 cut(s)	29, 487
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	372, 444
NlaIII	CATG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	485
PscI	ACATGT	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	27, 485
PspGI	CCWGG	2 cut(s)	27, 485
PspPI	GGNCC	2 cut(s)	96, 519
RsaI	GTAC	5 cut(s)	7, 26, 278, 287, 326
RsaNI	GTAC	5 cut(s)	6, 25, 277, 286, 325
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	12, 189
Sau3AI	GATC	2 cut(s)	372, 444
Sau96I	GGNCC	2 cut(s)	96, 519
ScrFI	CCNGG	3 cut(s)	29, 395, 487
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	33, 48, 93, 111, 150, 159, 265, 313, 359
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	65, 521
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	27, 393, 485
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	515
TasI	AATT	1 cut(s)	428
TatI	WGTACW	2 cut(s)	276, 324
Tru1I	TTAA	2 cut(s)	12, 189
Tru9I	TTAA	2 cut(s)	12, 189
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	189
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.