Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Forward (+)

27731619 .. 27732527

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGCATTTTCAAGTTCCACCAGTACCAGGTCGTCGGGAGGAAGCTCCCCACCGAGACCGATGAGCAGCCGAAGATTTACAGAATGAAGCTGTGGGCCACCAATGAGGTTCGCGCCAAATCCAAGTTCTGGTATTTTCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAAGTTCTTGCCATCAATGAGATCTTTGAGAAGAACCCGACAACCATCAAGAACTACGGTATCTGGTTGCGGTATCAAAGCAGGACGGGTTACCACAACATGTACAAGGAGTACCGCGACACCACGCTAAATGGTGCCGTGGAGCAGATGTACATTGAGATGGCATCTCGCCACAGGGTCAGGTTTCCTTGTATCCAGATCATCAAGACCGCCACCATCCCCGCTAAGCTTTGCAAGAGGGAAAGCACCAAGCAATTCCACAACTCCAAGATCAAGTTCCCGTTGGTGTTCAGGAAGGTTAGACCACCATCCAGGAAGTTGAAGACTACATACAAGGCGTCGAGGCCCAACTTGTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

179

Amino Acids

21.38

Weight (kDa)

10.42

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccII	CGCG	2 cut(s)	114, 291
AciI	CCGC	4 cut(s)	244, 289, 384, 396
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	4 cut(s)	26, 278, 287, 326
AfiI	CCNNNNNNNGG	2 cut(s)	28, 129
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	13, 496
AjnI	CCWGG	2 cut(s)	27, 485
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 434, 466
AluBI	AGCT	4 cut(s)	46, 91, 148, 403
AluI	AGCT	4 cut(s)	46, 91, 148, 403
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	3 cut(s)	96, 172, 518
ApeKI	GCWGC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	96, 519
AsuHPI	GGTGA	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BalI	TGGCCA	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	308
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	5 cut(s)	194, 227, 328, 398, 490
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	29, 487
BciVI	GTATCC	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	1 cut(s)	68
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	29, 487
BmgT120I	GGNCC	2 cut(s)	96, 519
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	29, 487
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	503
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 129
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	29, 487
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	390, 482
BseLI	CCNNNNNNNGG	2 cut(s)	28, 129
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	114, 291
BshFI	GGCC	3 cut(s)	98, 174, 520
BshNI	GGYRCC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	28, 129
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	98, 174, 520
Bso31I	GGTCTC	1 cut(s)	50
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	3 cut(s)	195, 372, 444
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	4 cut(s)	244, 289, 384, 396
BspANI	GGCC	3 cut(s)	98, 174, 520
BspCNI	CTCAG	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	114, 291
BspLI	GGNNCC	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	195, 372, 444
BssNI	GRCGYC	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	29, 487
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	512
BstAUI	TGTACA	2 cut(s)	276, 324
BstDEI	CTNAG	2 cut(s)	140, 399
BstDSI	CCRYGG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	390, 482
BstFNI	CGCG	2 cut(s)	114, 291
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	198, 375, 447
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	3 cut(s)	195, 372, 444
BstNI	CCWGG	2 cut(s)	29, 487
BstNSI	RCATGY	1 cut(s)	277
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	27, 485
BstUI	CGCG	2 cut(s)	114, 291
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	98, 174, 520
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	390, 482
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	96, 519
CseI	GACGC	1 cut(s)	501
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	4 cut(s)	25, 277, 286, 325
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	8 cut(s)	46, 70, 91, 98, 148, 174, 403, 520
CviKI_1	RGCY	8 cut(s)	46, 70, 91, 98, 148, 174, 403, 520
CviQI	GTAC	4 cut(s)	25, 277, 286, 325
DdeI	CTNAG	2 cut(s)	140, 399
DpnI	GATC	3 cut(s)	197, 374, 446
DpnII	GATC	3 cut(s)	195, 372, 444
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	27, 485
FaeI	CATG	1 cut(s)	277
FaiI	YATR	3 cut(s)	275, 505, 533
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	377, 469
Fsp4HI	GCNGC	1 cut(s)	68
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	98, 174, 520
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	401
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	5 cut(s)	37, 223, 370, 379, 466
Hpy99I	CGWCG	2 cut(s)	38, 517
HpyAV	CCTTC	2 cut(s)	148, 463
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	408
HpyF3I	CTNAG	2 cut(s)	140, 399
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	195, 372, 444
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	51, 316
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	347
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	197, 374, 446
MboI	GATC	3 cut(s)	195, 372, 444
MboII	GAAGA	6 cut(s)	85, 163, 172, 175, 217, 508
MflI	RGATCY	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	428
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	5 cut(s)	33, 100, 135, 405, 510
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	29, 487
MvaI	CCWGG	2 cut(s)	29, 487
MvnI	CGCG	2 cut(s)	114, 291
NdeII	GATC	3 cut(s)	195, 372, 444
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	485
PkrI	GCNGC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	27, 485
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	2 cut(s)	27, 485
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	96, 519
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	4 cut(s)	26, 278, 287, 326
RsaNI	GTAC	4 cut(s)	25, 277, 286, 325
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	195, 372, 444
Sau96I	GGNCC	2 cut(s)	96, 519
ScrFI	CCNGG	2 cut(s)	29, 487
SetI	ASST	9 cut(s)	33, 48, 93, 111, 150, 159, 359, 405, 474
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	4 cut(s)	244, 289, 384, 396
StyD4I	CCNGG	2 cut(s)	27, 485
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	515
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	428
TatI	WGTACW	2 cut(s)	276, 324
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	129
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.