Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

14532624 .. 14534409

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTGTGGGAAGAGCTCTCCCGACAGAGAAGGATGTGCAGCCTAAGATTTACAGGATGAAGCTCTGGGCTACGAACGAGGTTCGTGCCAAGTCCAAGTTCTGGTATTTCTTGAGGAAGCTCAAGAAGGTGAAGAAGAGTAATGGACAGATGCTCGCCATCAACGAGATCTATGAGAAGAACCCAACAACGATCAAGAACTTCGGTATTTGGTTGAGGTACCAGAGTAGAACTGGGTACCACAACATGTACAAGGAGTACCGTGACACCACTCTTAACGGAGCTGTTGAGCAGATGTACACTGAGATGGCATCCCGTCACCGTGTCAGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCAGCCAAGCTGTGCAAGAGAGAGAGCACTAAACAGTTCCACAACAGCAAGATCAAGTTCCCATTGGTGTTCCGCAAGGTTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAAGCCCAACTTGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0022414 GO:0022625 GO:0022626 GO:0030054 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040007 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044706 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0061458 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

178

Amino Acids

21.31

Weight (kDa)

10.49

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	46 - 167	2.5e-24	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	246, 264
AccB1I	GGYRCC	2 cut(s)	246, 264
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AciI	CCGC	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	6 cut(s)	26, 248, 266, 278, 287, 326
AfiI	CCNNNNNNNGG	3 cut(s)	28, 34, 129
AflIII	ACRYGT	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	6 cut(s)	44, 91, 148, 311, 403, 493
AluI	AGCT	6 cut(s)	44, 91, 148, 311, 403, 493
Alw21I	GWGCWC	2 cut(s)	46, 422
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	67
Asp718I	GGTACC	2 cut(s)	246, 264
AsuHPI	GGTGA	3 cut(s)	11, 169, 338
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanI	GGYRCC	2 cut(s)	246, 264
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	46, 422
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	194, 328
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	248, 266
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	168, 347
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	134, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 34, 129
Bse1I	ACTGG	2 cut(s)	22, 265
BseBI	CCWGG	1 cut(s)	29
BseGI	GGATG	3 cut(s)	67, 90, 338
BseLI	CCNNNNNNNGG	3 cut(s)	28, 34, 129
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	22, 265
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	512
BshNI	GGYRCC	2 cut(s)	246, 264
BsiHKAI	GWGCWC	2 cut(s)	46, 422
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	28, 34, 129
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	46, 422
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	4 cut(s)	195, 219, 372, 444
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	248, 266
BspQI	GCTCTTC	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	246, 264
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	2 cut(s)	22, 265
BssMI	GATC	4 cut(s)	195, 219, 372, 444
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	4 cut(s)	290, 350, 391, 429
Bst6I	CTCTTC	2 cut(s)	34, 158
BstAUI	TGTACA	2 cut(s)	276, 324
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	72, 330
BstF5I	GGATG	3 cut(s)	67, 90, 338
BstKTI	GATC	4 cut(s)	198, 222, 375, 447
BstMBI	GATC	4 cut(s)	195, 219, 372, 444
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	67, 90, 338
BtsIMutI	CAGTG	2 cut(s)	327, 387
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	389
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	6 cut(s)	25, 247, 265, 277, 286, 325
CviAII	CATG	2 cut(s)	274, 532
CviQI	GTAC	6 cut(s)	25, 247, 265, 277, 286, 325
DdeI	CTNAG	2 cut(s)	72, 330
DpnI	GATC	4 cut(s)	197, 221, 374, 446
DpnII	GATC	4 cut(s)	195, 219, 372, 444
Eam1104I	CTCTTC	2 cut(s)	34, 158
EarI	CTCTTC	2 cut(s)	34, 158
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	2 cut(s)	277, 535
FaiI	YATR	3 cut(s)	201, 275, 533
FalI	AAGNNNNNCTT	1 cut(s)	509
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	273, 531
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	3 cut(s)	74, 97, 325
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	512
Hin1II	CATG	2 cut(s)	277, 535
HinfI	GANTC	1 cut(s)	357
HphI	GGTGA	3 cut(s)	11, 169, 338
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	356, 372
Hpy188III	TCNNGA	5 cut(s)	49, 139, 151, 223, 379
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	52, 148
HpyCH4III	ACNGT	4 cut(s)	290, 350, 391, 429
HpyCH4V	TGCA	3 cut(s)	67, 366, 408
HpyF3I	CTNAG	2 cut(s)	72, 330
Hsp92II	CATG	2 cut(s)	277, 535
KpnI	GGTACC	2 cut(s)	250, 268
Kzo9I	GATC	4 cut(s)	195, 219, 372, 444
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	2 cut(s)	168, 347
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	290, 344
MalI	GATC	4 cut(s)	197, 221, 374, 446
MboI	GATC	4 cut(s)	195, 219, 372, 444
MboII	GAAGA	5 cut(s)	51, 172, 175, 217, 508
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	46, 422
MnlI	CCTC	3 cut(s)	100, 135, 237
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	29
NdeII	GATC	4 cut(s)	195, 219, 372, 444
NlaIII	CATG	2 cut(s)	277, 535
NlaIV	GGNNCC	2 cut(s)	248, 266
NmuCI	GTSAC	2 cut(s)	290, 344
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	357
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PkrI	GCNGC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	248, 266
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	6 cut(s)	26, 248, 266, 278, 287, 326
RsaNI	GTAC	6 cut(s)	25, 247, 265, 277, 286, 325
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	195, 219, 372, 444
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	46, 422
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	168, 347
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	139, 149
SmoI	CTYRAG	2 cut(s)	139, 149
SsiI	CCGC	1 cut(s)	466
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	4 cut(s)	290, 350, 391, 429
TatI	WGTACW	2 cut(s)	276, 324
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	334, 394
TseFI	GTSAC	2 cut(s)	290, 344
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	2 cut(s)	290, 344
TspDTI	ATGAA	2 cut(s)	101, 520
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	334, 394
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.